Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007836

Physical Location & Seq

Genomic Coordinates Reverse (-)

60376445 .. 60376925

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014992

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGGGTTTGATTCCTTATCTTCTCCACGCCATCAAGAAGCAAAGGCCTCAGCACAAGTTTAGGTCATTTTCCGGGACCGGGAGCAACTCCAACGGGAGCTATCATCTCCTCACCGGTGGCAATGACTCCTTAGAAGGGTCATCTCATCGCCGGACGCGATCTGAGTTCCCAGCTCCTGCCACTGCTGACTTGTTCGAGCAGCGATCGGAGCTTCAGTTTGCTTATTCACGGAGCTACAAGGAAGAAAGTGGTGCTTCTGCGGCTGTGGCTTCCTTGCCCGGAGGATCAAAGAAGGGTTTCTATCCTTACCAAGCAGCTAGCAGAAAGTACAAGCAGGAAGAATGGGTTCAAAGGTGGAGCTTCATCATGATCAATGATGGGGTTGCCACTAGAAGTTCATTTCTTGTCGAAGTTGTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

142

Amino Acids

15.76

Weight (kDa)

9.56

Isoelectric Point (pI)

66.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19615
fragaria_vesca	FvH4_2g04290 FvH4_2g04291
malus_domestica	MD10G1105100.v1.1
prunus_persica	Prupe.8G144000_v2.0.a1 Prupe.8G144100_v2.0.a1
pyrus_communis	pycom05g09840 pycom10g09050
rosa_chinensis	RchiOBHm_Chr6g0253681 RchiOBHm_Chr6g0253721 RchiOBHm_Chr6g0253731
rosa_laevigata	RLG00000014992
rosa_multiflora	Rmu_sc0001351.1_g000009
rosa_roxburghii	Rroxscaffold_7G00211700
rosa_rugosa	Rorug05G0545900
rosa_samantha	Rh6AG061300 Rh6AG061400 Rh6BG055000 Rh6CG054900 Rh6CG055000 Rh6DG052400 Rh6DG052500
rosa_wichuraiana	Rw6G005450 Rw6G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	160
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	81, 138
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	353
AluBI	AGCT	6 cut(s)	102, 176, 214, 237, 320, 363
AluI	AGCT	6 cut(s)	102, 176, 214, 237, 320, 363
AlwI	GGATC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	179
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	202, 317
AsiGI	ACCGGT	1 cut(s)	116
Asp700I	GAANNNNTTC	2 cut(s)	299, 348
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	3 cut(s)	76, 82, 282
AsuHPI	GGTGA	1 cut(s)	106
AsuNHI	GCTAGC	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	78
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	214, 329
BccI	CCATC	2 cut(s)	41, 374
BclI	TGATCA	1 cut(s)	372
BcnI	CCSGG	3 cut(s)	76, 82, 282
BfaI	CTAG	2 cut(s)	321, 393
BisI	GCNGC	3 cut(s)	203, 264, 318
BlsI	GCNGC	3 cut(s)	204, 265, 319
Bme1390I	CCNGG	3 cut(s)	76, 82, 282
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	3 cut(s)	76, 82, 282
BmtI	GCTAGC	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	51
BpuMI	CCSGG	3 cut(s)	76, 82, 282
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 138
Bse118I	RCCGGY	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	81, 138
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	65, 156
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	214, 329
BseYI	CCCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	49
BshTI	ACCGGT	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	209
BsiSI	CCGG	5 cut(s)	75, 81, 117, 154, 282
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	81, 138
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	161, 206, 287, 372
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	2 cut(s)	64, 157
BspFNI	CGCG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	79
BspOI	GCTAGC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	4 cut(s)	161, 206, 287, 372
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	3 cut(s)	51, 133, 165
BstFNI	CGCG	1 cut(s)	160
BstKTI	GATC	4 cut(s)	164, 209, 290, 375
BstMBI	GATC	4 cut(s)	161, 206, 287, 372
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 263, 269
BstSCI	CCNGG	3 cut(s)	74, 80, 280
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	214, 329
BsuRI	GGCC	1 cut(s)	49
BtgZI	GCGATG	1 cut(s)	134
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	179
CciI	TCATGA	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	78
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	331
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	9 cut(s)	49, 102, 176, 214, 237, 266, 272, 320, 363
CviKI_1	RGCY	9 cut(s)	49, 102, 176, 214, 237, 266, 272, 320, 363
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	3 cut(s)	51, 133, 165
DpnI	GATC	4 cut(s)	163, 208, 289, 374
DpnII	GATC	4 cut(s)	161, 206, 287, 372
Eco147I	AGGCCT	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	200
FaeI	CATG	1 cut(s)	373
FaiI	YATR	1 cut(s)	371
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	369
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	3 cut(s)	203, 264, 318
Fsp4HI	GCNGC	3 cut(s)	203, 264, 318
FspBI	CTAG	2 cut(s)	321, 393
GluI	GCNGC	3 cut(s)	203, 264, 318
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	5 cut(s)	75, 81, 117, 154, 282
HgaI	GACGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	373
HinfI	GANTC	2 cut(s)	13, 128
HpaII	CCGG	5 cut(s)	75, 81, 117, 154, 282
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	166, 211
Hpy188III	TCNNGA	2 cut(s)	37, 370
HpyAV	CCTTC	2 cut(s)	131, 289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 263, 269
HpyF3I	CTNAG	3 cut(s)	51, 133, 165
Hsp92II	CATG	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	4 cut(s)	161, 206, 287, 372
LmnI	GCTCC	6 cut(s)	84, 99, 181, 211, 234, 360
LpnPI	CCDG	8 cut(s)	88, 94, 130, 167, 186, 192, 295, 323
Lsp1109I	GCAGC	2 cut(s)	214, 329
MaeI	CTAG	2 cut(s)	321, 393
MalI	GATC	4 cut(s)	163, 208, 289, 374
MboI	GATC	4 cut(s)	161, 206, 287, 372
MboII	GAAGA	3 cut(s)	14, 257, 353
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	3 cut(s)	60, 122, 278
MroXI	GAANNNNTTC	2 cut(s)	299, 348
MspI	CCGG	5 cut(s)	75, 81, 117, 154, 282
MspR9I	CCNGG	3 cut(s)	76, 82, 282
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	3 cut(s)	211, 263, 269
NciI	CCSGG	3 cut(s)	76, 82, 282
NdeII	GATC	4 cut(s)	161, 206, 287, 372
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	1 cut(s)	79
PagI	TCATGA	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PdmI	GAANNNNTTC	2 cut(s)	299, 348
PfeI	GAWTC	1 cut(s)	13
PfoI	TCCNGGA	1 cut(s)	74
PinAI	ACCGGT	1 cut(s)	116
PkrI	GCNGC	3 cut(s)	204, 265, 319
Ple19I	CGATCG	1 cut(s)	209
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	179
PvuI	CGATCG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SatI	GCNGC	3 cut(s)	203, 264, 318
Sau3AI	GATC	4 cut(s)	161, 206, 287, 372
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	3 cut(s)	76, 82, 282
SetI	ASST	8 cut(s)	68, 104, 178, 216, 239, 322, 359, 365
SgrAI	CRCCGGYG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	78
SseBI	AGGCCT	1 cut(s)	49
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	321, 393
StuI	AGGCCT	1 cut(s)	49
StyD4I	CCNGG	3 cut(s)	74, 80, 280
TaqI	TCGA	2 cut(s)	198, 411
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	2 cut(s)	202, 317
TspDTI	ATGAA	2 cut(s)	355, 390
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	78
XmnI	GAANNNNTTC	2 cut(s)	299, 348
XspI	CTAG	2 cut(s)	321, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.