Rorug05G0545900

hydrolase activity, hydrolyzing O-glycosyl compounds

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007836
Physical Location & Seq
Reverse (-)
73469851 .. 73470778
928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0545900.1

Sequence Viewer

Length: 327 bp
ATGAAGCAAAAGATTGTGATGAAGGTGCAATTTAGCTCTGAGAAACGCAGAACCGATGCCTTCAAGATTGCTGCCGGCACTAAAGGTGTGAGCGATGTGTCTATAGAAGCAGGTAAAGACCAAGTTGTGGTGATCGGAGATGGAGTTGACTCGGTTTGCTTGACCCAGTCATTAAGGAAGAAGCTCCGATACGTCGAAATAGTAAGTGTTGAAGAGGTGAAAAAGCCCGATGAAAAAAAGAAGCCAGAAGTTGAGAGTATTCCAATTCAATGGACATCTAGCTATGTCCACTATCCCATGCACTATGATGTTGTGTACCGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

108

Amino Acids

12.38

Weight (kDa)

9.16

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 127
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 3 cut(s) 64, 212, 269
AluBI AGCT 3 cut(s) 36, 184, 282
AluI AGCT 3 cut(s) 36, 184, 282
ApeKI GCWGC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 142, 229
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 134
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 101
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 127
Bsp143I GATC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 74
BssMI GATC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 39
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 74
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 298
CviJI RGCY 5 cut(s) 36, 184, 226, 244, 282
CviKI_1 RGCY 5 cut(s) 36, 184, 226, 244, 282
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
FaeI CATG 1 cut(s) 301
FaiI YATR 4 cut(s) 104, 285, 299, 306
FatI CATG 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 72
HapII CCGG 1 cut(s) 75
Hin1II CATG 1 cut(s) 301
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 75
HphI GGTGA 2 cut(s) 142, 229
Hpy166II GTNNAC 3 cut(s) 148, 289, 316
Hpy188I TCNGA 3 cut(s) 40, 137, 188
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 3 cut(s) 148, 289, 316
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 16, 70
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 28, 301
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 1 cut(s) 301
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 4 cut(s) 88, 96, 179, 258
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 192
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 2 cut(s) 190, 224
MluCI AATT 2 cut(s) 29, 264
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 1 cut(s) 208
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 75
NaeI GCCGGC 1 cut(s) 76
NdeII GATC 1 cut(s) 132
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 1 cut(s) 301
PdiI GCCGGC 1 cut(s) 76
PflFI GACNNNGTC 1 cut(s) 166
PflMI CCANNNNNTGG 1 cut(s) 127
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 166
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 132
SchI GAGTC 1 cut(s) 143
SetI ASST 8 cut(s) 27, 38, 88, 115, 186, 195, 219, 284
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 2 cut(s) 29, 264
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 29, 264
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 17, 35, 246
Tth111I GACNNNGTC 1 cut(s) 166
Van91I CCANNNNNTGG 1 cut(s) 127
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.