pycom10g09050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0007836
Physical Location & Seq
Forward (+)
11979652 .. 11979948
297 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g09050.1

Sequence Viewer

Length: 297 bp
ATGGAAGGTTTGATTCCATTTCTTCTTCATGCAATCAAGAAGCAAAGGCCTCAGCACAAGTTCAGATCGTTTTCTGTTTCTGAGAGCAACTCCAACCGTAGCTACCATCTTCTGATGAGCGGCCAGGATTCATTGGAGGGCTCGTCTCACCGCCGGACACGGTCGGAATTCCAGCCTCCCACCTTCAATAAGCAAGAAGGCGGTGTTTCCGCTGTTGCTCCTTCGGTGCTCGTTGGATCGAAGATGGGGTCGTATCCTTACCAAGGCTCTAATGTGGGCATGGCTAGAAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.91

Weight (kDa)

10.48

Isoelectric Point (pI)

83.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 120
AciI CCGC 4 cut(s) 120, 151, 201, 210
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 244
AoxI GGCC 2 cut(s) 47, 121
ApoI RAATTY 1 cut(s) 167
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AsuHPI GGTGA 1 cut(s) 140
BanII GRGCYC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 51
BccI CCATC 2 cut(s) 114, 238
BciT130I CCWGG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 285
BfuI GTATCC 1 cut(s) 264
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
BplI GAGNNNNNCTC 2 cut(s) 74, 106
Bpu10I CCTNAGC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 2 cut(s) 65, 72
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 49, 123
BsiEI CGRYCG 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsnI GGCC 2 cut(s) 49, 123
Bsp1286I GDGCHC 2 cut(s) 143, 231
Bsp143I GATC 2 cut(s) 65, 236
BspACI CCGC 4 cut(s) 120, 151, 201, 210
BspANI GGCC 2 cut(s) 49, 123
BspCNI CTCAG 2 cut(s) 64, 73
BspPI GGATC 1 cut(s) 244
BsrBI CCGCTC 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 2 cut(s) 65, 236
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 2 cut(s) 98, 162
BstDEI CTNAG 2 cut(s) 51, 81
BstENI CCTNNNNNAGG 1 cut(s) 261
BstKTI GATC 2 cut(s) 68, 239
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 65, 236
BstMCI CGRYCG 1 cut(s) 164
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 2 cut(s) 49, 123
CviAII CATG 2 cut(s) 29, 280
CviJI RGCY 7 cut(s) 49, 102, 123, 141, 175, 267, 284
CviKI_1 RGCY 7 cut(s) 49, 102, 123, 141, 175, 267, 284
DdeI CTNAG 2 cut(s) 51, 81
DpnI GATC 2 cut(s) 67, 238
DpnII GATC 2 cut(s) 65, 236
EaeI YGGCCR 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 262
Eco147I AGGCCT 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 143
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 262
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 2 cut(s) 32, 283
FaiI YATR 2 cut(s) 30, 281
FatI CATG 2 cut(s) 28, 279
Fnu4HI GCNGC 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 1 cut(s) 285
GluI GCNGC 1 cut(s) 121
HaeIII GGCC 2 cut(s) 49, 123
HapII CCGG 1 cut(s) 154
Hin1II CATG 2 cut(s) 32, 283
HinfI GANTC 2 cut(s) 13, 128
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 4 cut(s) 65, 82, 114, 166
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 4 cut(s) 191, 193, 231, 282
HpyCH4III ACNGT 2 cut(s) 98, 162
HpyCH4V TGCA 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 51, 81
Hsp92II CATG 2 cut(s) 32, 283
Kzo9I GATC 2 cut(s) 65, 236
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 4 cut(s) 110, 137, 167, 185
MaeI CTAG 1 cut(s) 285
MalI GATC 2 cut(s) 67, 238
MbiI CCGCTC 1 cut(s) 120
MboI GATC 2 cut(s) 65, 236
MboII GAAGA 4 cut(s) 14, 17, 101, 253
MhlI GDGCHC 2 cut(s) 143, 231
MluCI AATT 1 cut(s) 167
MmeI TCCRAC 3 cut(s) 117, 144, 214
MnlI CCTC 3 cut(s) 60, 130, 186
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
NdeII GATC 2 cut(s) 65, 236
NlaIII CATG 2 cut(s) 32, 283
PceI AGGCCT 1 cut(s) 49
PfeI GAWTC 2 cut(s) 13, 128
PflFI GACNNNGTC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PsyI GACNNNGTC 1 cut(s) 160
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 65, 236
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 2 cut(s) 143, 231
SetI ASST 3 cut(s) 10, 104, 185
Sse9I AATT 1 cut(s) 167
SseBI AGGCCT 1 cut(s) 49
SsiI CCGC 4 cut(s) 120, 151, 201, 210
SspMI CTAG 1 cut(s) 285
StuI AGGCCT 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 98, 162
TaqI TCGA 1 cut(s) 239
TasI AATT 1 cut(s) 167
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 2 cut(s) 13, 128
TspDTI ATGAA 2 cut(s) 17, 120
Tth111I GACNNNGTC 1 cut(s) 160
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 1 cut(s) 167
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.