Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007836

Physical Location & Seq

Genomic Coordinates Forward (+)

16074100 .. 16074793

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G144100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGATCTAGGCAGCCACAAAATGGAAGGCTTAATTCCTTATCTTTATCACGCCATCAAGAAGCAAAGACCTCAACGCAGGCACCGGTCATCCTTTACTGAGAGCATCTCCACTCATGCTAGCTACCATCGCTTGACGAGTGGCCATGATGTCTTAGAGGCCTCATCTCTTCGTCGAACACCGCCGGAAGTTATTCGTTCGCGTAGCTTCCAGGAAGAAGGTGGTGCTTCTGCTGCTCCTCCAGGCCACATTGAATCATCAAAGAGTTCAAAATTGGACCTTACTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

97

Amino Acids

10.71

Weight (kDa)

9.77

Isoelectric Point (pI)

91.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19615
fragaria_vesca	FvH4_2g04290 FvH4_2g04291
malus_domestica	MD10G1105100.v1.1
prunus_persica	Prupe.8G144000_v2.0.a1 Prupe.8G144100_v2.0.a1
pyrus_communis	pycom05g09840 pycom10g09050
rosa_chinensis	RchiOBHm_Chr6g0253681 RchiOBHm_Chr6g0253721 RchiOBHm_Chr6g0253731
rosa_laevigata	RLG00000014992
rosa_multiflora	Rmu_sc0001351.1_g000009
rosa_roxburghii	Rroxscaffold_7G00211700
rosa_rugosa	Rorug05G0545900
rosa_samantha	Rh6AG061300 Rh6AG061400 Rh6BG055000 Rh6CG054900 Rh6CG055000 Rh6DG052400 Rh6DG052500
rosa_wichuraiana	Rw6G005450 Rw6G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	81
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccII	CGCG	1 cut(s)	202
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgeI	ACCGGT	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	254, 270
AjnI	CCWGG	2 cut(s)	210, 241
AluBI	AGCT	2 cut(s)	123, 207
AluI	AGCT	2 cut(s)	123, 207
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	3 cut(s)	142, 159, 244
ApeKI	GCWGC	2 cut(s)	12, 233
AsiGI	ACCGGT	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	277
AsuNHI	GCTAGC	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	24, 220
BccI	CCATC	2 cut(s)	62, 135
BciT130I	CCWGG	2 cut(s)	212, 243
BfaI	CTAG	2 cut(s)	8, 120
BisI	GCNGC	2 cut(s)	13, 234
BlsI	GCNGC	2 cut(s)	14, 235
Bme1390I	CCNGG	2 cut(s)	212, 243
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	2 cut(s)	212, 243
BmsI	GCATC	1 cut(s)	114
BmtI	GCTAGC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpmI	CTGGAG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	212, 243
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	24, 220
Bsh1236I	CGCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	144, 161, 246
BshNI	GGYRCC	1 cut(s)	81
BshTI	ACCGGT	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	85, 185
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	3 cut(s)	144, 161, 246
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	3 cut(s)	144, 161, 246
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	83
BspOI	GCTAGC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	84
BssMI	GATC	1 cut(s)	4
Bst2UI	CCWGG	2 cut(s)	212, 243
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	80, 121
BstDEI	CTNAG	2 cut(s)	99, 154
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	202
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 233
BstNI	CCWGG	2 cut(s)	212, 243
BstSCI	CCNGG	2 cut(s)	210, 241
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	24, 220
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	144, 161, 246
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	80, 121
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	277
CspAI	ACCGGT	1 cut(s)	84
CviAII	CATG	2 cut(s)	116, 146
CviJI	RGCY	7 cut(s)	15, 30, 123, 144, 161, 207, 246
CviKI_1	RGCY	7 cut(s)	15, 30, 123, 144, 161, 207, 246
DdeI	CTNAG	2 cut(s)	99, 154
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco147I	AGGCCT	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	210, 241
FaeI	CATG	2 cut(s)	119, 149
FaiI	YATR	3 cut(s)	117, 147, 289
FatI	CATG	2 cut(s)	115, 145
Fnu4HI	GCNGC	2 cut(s)	13, 234
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	2 cut(s)	13, 234
FspBI	CTAG	2 cut(s)	8, 120
GluI	GCNGC	2 cut(s)	13, 234
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	144, 161, 246
HapII	CCGG	2 cut(s)	85, 185
Hin1II	CATG	2 cut(s)	119, 149
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	2 cut(s)	85, 185
Hpy188III	TCNNGA	1 cut(s)	58
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	20, 212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 233
HpyF3I	CTNAG	2 cut(s)	99, 154
Hsp92II	CATG	2 cut(s)	119, 149
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	64, 98, 197, 198, 224, 228, 255
Lsp1109I	GCAGC	2 cut(s)	24, 220
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	8, 120
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	2 cut(s)	161, 227
MflI	RGATCY	1 cut(s)	4
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	2 cut(s)	33, 272
MluNI	TGGCCA	1 cut(s)	144
MnlI	CCTC	4 cut(s)	81, 151, 172, 249
Mox20I	TGGCCA	1 cut(s)	144
MroXI	GAANNNNTTC	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	32
Msp20I	TGGCCA	1 cut(s)	144
MspI	CCGG	2 cut(s)	85, 185
MspR9I	CCNGG	2 cut(s)	212, 243
MvaI	CCWGG	2 cut(s)	212, 243
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	129, 233
NdeII	GATC	1 cut(s)	4
NheI	GCTAGC	1 cut(s)	119
NlaIII	CATG	2 cut(s)	119, 149
NlaIV	GGNNCC	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	254
PflMI	CCANNNNNTGG	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	210
PinAI	ACCGGT	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	14, 235
Psp6I	CCWGG	2 cut(s)	210, 241
PspGI	CCWGG	2 cut(s)	210, 241
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	2 cut(s)	13, 234
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	2 cut(s)	212, 243
SetI	ASST	5 cut(s)	73, 125, 209, 223, 282
SfaNI	GCATC	1 cut(s)	114
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	2 cut(s)	33, 272
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	8, 120
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	2 cut(s)	210, 241
TaqI	TCGA	1 cut(s)	175
TasI	AATT	2 cut(s)	33, 272
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TseI	GCWGC	2 cut(s)	12, 233
TspDTI	ATGAA	1 cut(s)	276
Van91I	CCANNNNNTGG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	2 cut(s)	8, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.