pycom05g09840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0007836
Physical Location & Seq
Forward (+)
13130007 .. 13130306
300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09840.1

Sequence Viewer

Length: 300 bp
ATGGAAGGTTTGATTCCATTTCTTATTCATGCAATCAAGAAGCAAAGTCCTCAGCACAGGATGATCAGATCGTTTTCTGCTTCTGAGAGCAACTCCAACCGTAGCTACCATCCTCTGCTGACCGGCCAGGATTCAGCAGAGGGCTCGTCTCACCGCAGGACAAGGTCGGAGTTCCAGCCTCCCACCTTCATTAAGGAAGAAGCGGGTGTTTCCGCTGCTGCTCCTTCGGTGTTCATTGGATCGAAGATGGGTTCCTATCCTTACCAAGGCTCTAATGTGGGCATGACTAGAAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.94

Weight (kDa)

10.19

Isoelectric Point (pI)

76.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 154, 203, 213
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 266
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 1 cut(s) 247
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 215, 218
AsuHPI GGTGA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 146
BbvCI CCTCAGC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 202, 205
BccI CCATC 2 cut(s) 117, 241
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BciT130I CCWGG 1 cut(s) 128
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 288
BisI GCNGC 2 cut(s) 216, 219
BlsI GCNGC 2 cut(s) 217, 220
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu10I CCTNAGC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 122
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 2 cut(s) 66, 109
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMII CTCAG 2 cut(s) 65, 75
BseXI GCAGC 2 cut(s) 202, 205
BshFI GGCC 1 cut(s) 126
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 153
BsmBI CGTCTC 1 cut(s) 153
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 3 cut(s) 63, 68, 239
BspACI CCGC 3 cut(s) 154, 203, 213
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 2 cut(s) 64, 76
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 3 cut(s) 63, 68, 239
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 51, 84
BstENI CCTNNNNNAGG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 66, 109
BstKTI GATC 3 cut(s) 66, 71, 242
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 3 cut(s) 63, 68, 239
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 202, 205
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 2 cut(s) 66, 109
Cfr10I RCCGGY 1 cut(s) 122
CviAII CATG 2 cut(s) 29, 283
CviJI RGCY 5 cut(s) 105, 126, 144, 178, 270
CviKI_1 RGCY 5 cut(s) 105, 126, 144, 178, 270
DdeI CTNAG 2 cut(s) 51, 84
DpnI GATC 3 cut(s) 65, 70, 241
DpnII GATC 3 cut(s) 63, 68, 239
EaeI YGGCCR 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 146
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 265
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 2 cut(s) 32, 286
FaiI YATR 2 cut(s) 30, 284
FatI CATG 2 cut(s) 28, 282
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 216, 219
FokI GGATG 2 cut(s) 73, 96
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 216, 219
FspBI CTAG 1 cut(s) 288
GluI GCNGC 2 cut(s) 216, 219
HaeIII GGCC 1 cut(s) 126
HapII CCGG 1 cut(s) 123
Hin1II CATG 2 cut(s) 32, 286
HinfI GANTC 2 cut(s) 13, 131
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 3 cut(s) 68, 85, 169
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 196, 234, 285
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 51, 84
Hsp92II CATG 2 cut(s) 32, 286
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 3 cut(s) 63, 68, 239
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 6 cut(s) 43, 113, 136, 140, 142, 188
Lsp1109I GCAGC 2 cut(s) 202, 205
MaeI CTAG 1 cut(s) 288
MalI GATC 3 cut(s) 65, 70, 241
MboI GATC 3 cut(s) 63, 68, 239
MboII GAAGA 2 cut(s) 209, 256
MhlI GDGCHC 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 120, 147
MnlI CCTC 4 cut(s) 60, 123, 133, 189
MseI TTAA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
NdeII GATC 3 cut(s) 63, 68, 239
NlaIII CATG 2 cut(s) 32, 286
NlaIV GGNNCC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 13, 131
PflFI GACNNNGTC 1 cut(s) 163
PkrI GCNGC 2 cut(s) 217, 220
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 253
PsyI GACNNNGTC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 216, 219
Sau3AI GATC 3 cut(s) 63, 68, 239
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 146
SetI ASST 4 cut(s) 10, 107, 167, 188
SsiI CCGC 3 cut(s) 154, 203, 213
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 242
TfiI GAWTC 2 cut(s) 13, 131
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 2 cut(s) 215, 218
TspDTI ATGAA 3 cut(s) 17, 178, 223
Tth111I GACNNNGTC 1 cut(s) 163
XagI CCTNNNNNAGG 1 cut(s) 264
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.