Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007836

Physical Location & Seq

Genomic Coordinates Forward (+)

9141720 .. 9142362

Gene Structure 643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG061300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAGGGTTTGATTCCTTATCTTCTCCATGCCATCAAGAAGCAAAGGCCTCAGCACAAGTTTAGGTCATTTTCCGGGACAGGGAGCAACTCCAACCGGAGCTACCATCTCCTCACCGGTGGCAATGACTCCTTAGAGGGGTCATCTCACCGCCGGACGCGATCTGAGTTCCCAGCTCCTGCCACTGCTGACTTGTTCGAGCAGCGATCGGAGCTTCAGTTTGCTTATTCACGGAGCTACAAGGAAGAAAGTGGTGCTTCTGCAGCTGCGGCTTCCTTGCCCGGAGGATCAAAGAAGGGTTTCTATCCTTACCAAGCAGCTAGCAGGAAGTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

112

Amino Acids

12.41

Weight (kDa)

9.93

Isoelectric Point (pI)

70.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19615
fragaria_vesca	FvH4_2g04290 FvH4_2g04291
malus_domestica	MD10G1105100.v1.1
prunus_persica	Prupe.8G144000_v2.0.a1 Prupe.8G144100_v2.0.a1
pyrus_communis	pycom05g09840 pycom10g09050
rosa_chinensis	RchiOBHm_Chr6g0253681 RchiOBHm_Chr6g0253721 RchiOBHm_Chr6g0253731
rosa_laevigata	RLG00000014992
rosa_multiflora	Rmu_sc0001351.1_g000009
rosa_roxburghii	Rroxscaffold_7G00211700
rosa_rugosa	Rorug05G0545900
rosa_samantha	Rh6AG061300 Rh6AG061400 Rh6BG055000 Rh6CG054900 Rh6CG055000 Rh6DG052400 Rh6DG052500
rosa_wichuraiana	Rw6G005450 Rw6G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	160
AciI	CCGC	2 cut(s)	151, 269
AclWI	GGATC	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	81, 138
AgeI	ACCGGT	1 cut(s)	116
AluBI	AGCT	6 cut(s)	102, 176, 214, 237, 266, 320
AluI	AGCT	6 cut(s)	102, 176, 214, 237, 266, 320
AlwI	GGATC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	179
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	4 cut(s)	202, 263, 266, 317
AsiGI	ACCGGT	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	299
AsuC2I	CCSGG	2 cut(s)	76, 282
AsuHPI	GGTGA	2 cut(s)	106, 140
AsuNHI	GCTAGC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	4 cut(s)	214, 253, 275, 329
BccI	CCATC	2 cut(s)	41, 114
BcnI	CCSGG	2 cut(s)	76, 282
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	5 cut(s)	203, 264, 267, 270, 318
BlsI	GCNGC	5 cut(s)	204, 265, 268, 271, 319
Bme1390I	CCNGG	2 cut(s)	76, 282
BmrFI	CCNGG	2 cut(s)	76, 282
BmtI	GCTAGC	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	51
BpuMI	CCSGG	2 cut(s)	76, 282
BsaWI	WCCGGW	2 cut(s)	96, 116
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 138
Bse118I	RCCGGY	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	81, 138
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	65, 156
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	4 cut(s)	214, 253, 275, 329
BseYI	CCCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	49
BshTI	ACCGGT	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	209
BsiSI	CCGG	5 cut(s)	75, 97, 117, 154, 282
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	81, 138
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	161, 206, 287
BspACI	CCGC	2 cut(s)	151, 269
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	2 cut(s)	64, 157
BspFNI	CGCG	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	265
BspOI	GCTAGC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	3 cut(s)	161, 206, 287
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	3 cut(s)	51, 133, 165
BstFNI	CGCG	1 cut(s)	160
BstKTI	GATC	3 cut(s)	164, 209, 290
BstMBI	GATC	3 cut(s)	161, 206, 287
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 263, 269
BstSCI	CCNGG	2 cut(s)	74, 280
BstSFI	CTRYAG	1 cut(s)	261
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	4 cut(s)	214, 253, 275, 329
BsuRI	GGCC	1 cut(s)	49
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	116
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	331
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	8 cut(s)	49, 102, 176, 214, 237, 266, 272, 320
CviKI_1	RGCY	8 cut(s)	49, 102, 176, 214, 237, 266, 272, 320
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	3 cut(s)	51, 133, 165
DpnI	GATC	3 cut(s)	163, 208, 289
DpnII	GATC	3 cut(s)	161, 206, 287
Eco147I	AGGCCT	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	200
FaeI	CATG	1 cut(s)	32
FaiI	YATR	1 cut(s)	30
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	28
Fnu4HI	GCNGC	5 cut(s)	203, 264, 267, 270, 318
Fsp4HI	GCNGC	5 cut(s)	203, 264, 267, 270, 318
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	5 cut(s)	203, 264, 267, 270, 318
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	5 cut(s)	75, 97, 117, 154, 282
HgaI	GACGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	2 cut(s)	13, 128
HpaII	CCGG	5 cut(s)	75, 97, 117, 154, 282
HphI	GGTGA	2 cut(s)	106, 140
Hpy188I	TCNGA	2 cut(s)	166, 211
Hpy188III	TCNNGA	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	289
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 263, 269
HpyF3I	CTNAG	3 cut(s)	51, 133, 165
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	3 cut(s)	161, 206, 287
LmnI	GCTCC	5 cut(s)	84, 99, 181, 211, 234
LpnPI	CCDG	9 cut(s)	66, 88, 110, 130, 167, 186, 192, 295, 310
Lsp1109I	GCAGC	4 cut(s)	214, 253, 275, 329
MaeI	CTAG	1 cut(s)	321
MalI	GATC	3 cut(s)	163, 208, 289
MboI	GATC	3 cut(s)	161, 206, 287
MboII	GAAGA	2 cut(s)	14, 257
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	4 cut(s)	60, 122, 130, 278
MroXI	GAANNNNTTC	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	5 cut(s)	75, 97, 117, 154, 282
MspR9I	CCNGG	2 cut(s)	76, 282
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	3 cut(s)	211, 263, 269
NciI	CCSGG	2 cut(s)	76, 282
NdeII	GATC	3 cut(s)	161, 206, 287
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	32
PceI	AGGCCT	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	13
PfoI	TCCNGGA	1 cut(s)	74
PinAI	ACCGGT	1 cut(s)	116
PkrI	GCNGC	5 cut(s)	204, 265, 268, 271, 319
Ple19I	CGATCG	1 cut(s)	209
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	179
PvuI	CGATCG	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SatI	GCNGC	5 cut(s)	203, 264, 267, 270, 318
Sau3AI	GATC	3 cut(s)	161, 206, 287
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	76, 282
SetI	ASST	7 cut(s)	68, 104, 178, 216, 239, 268, 322
SfcI	CTRYAG	1 cut(s)	261
SgrAI	CRCCGGYG	1 cut(s)	116
SseBI	AGGCCT	1 cut(s)	49
SsiI	CCGC	2 cut(s)	151, 269
SspMI	CTAG	1 cut(s)	321
StuI	AGGCCT	1 cut(s)	49
StyD4I	CCNGG	2 cut(s)	74, 280
TaqI	TCGA	1 cut(s)	198
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	4 cut(s)	202, 263, 266, 317
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.