FvH4_2g06340

Eukaryotic protein of unknown function (DUF829)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
5264546 .. 5268176
3631 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06340.t1

Sequence Viewer

Length: 1239 bp
ATGTCGGCTGGTGCTGCGGATCGCGGCGGCGGGATCTACTGGGGCCGAAAGGAGGTCTCCTATTCCAAAGGCATCGCCGTCATCTTCGCCTGGGTTTCGATTCCCGAGCGCCACTTGAAGAGCTACGTCAATTTGTATTCCTCTCTCGGTTGGAACTCCCTCGTTTGCCATGCTCATTTTCTCCAGGCATTCTACCCGGAAAGAGCCATGTCGTCGGCGTTTGATATCCTCAATGAGCTTGTGGAGGAGCTAAGGATTAAGCCGTGTCCTGTAGTTTTTGTGGGTCTTTCTGCTGGTACTAAAGCTTGTATGTACAAAGTTTTTCAGATTATTGAAGGAATCTGTGAAGGCCAGCTTTATCCGGGTGAATACCGATTGGTGAGGAAATGTATTACCGGACACATCTATGATTCTGGCCCGGTTGATTTTACAACTGACCTTGGCACACACTATGCTCTACACCCGACCATTCTAAAGATGCCTGGTTCATCAAAGTTGGTTTCATGGGTTGCTAAAGGCATTGCTTCTGGTTTGGATGCTCTTTATCTTACTCGATTTGAATCCCAATGTGCCGAGTATTGGCAGGCTCTGTATTCTTCAGTTAATCTGGGTGCTCCATTTCTCATTTTGTGCTCCAATAAAGACGATCTCGCTCCCTATCATGTTGTCTGCACTTTCAGTCAACGTTTACAAGAGTTTGGAGGTGATGTCAAGCTTGTGAAATTGAGTGGTTCCCCTCACCTAGGTCATTATAAGAATTATCCAATACAATATAGATCTTCTGTTACTCATTTTCTTGAGAAGGCAGCATCGATTTTTTCGCAAAGAATTCAAAAGCTTGAATGGGAAATGACTGGCATGGAAGGCATGCGTGATGAGATATCTGAACTAATCTGTGATCTCCAGACAGCAGCCGTTAACTCTAATGAGAGCCTCAGAAGAGTTGCAGTTGAGCCAAGCGATCACTTTTTCTTGCCAAGTTCAGCAGAGAATAAAAATGGTACAGAATCTGGGTCATTGCAAGACGAACAGAAAGAAAGATCACTCTGTCTGTCTAATCCTCCAAGCCTTAGTGCACATAGTGTACTTGGCAGTGTGCTGTTTGATGTTTGTGTCCCTAAGAACGTTGATGGTTGGGATATCAAGTTCTGTGGGTCTCTGAATGGGCAGCCATTTGCATCTGCTCGTAGGAATTCACCACCTCGTGGTATCAAAGGCCTTCGTCGCTCGAGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

413

Amino Acids

45.7

Weight (kDa)

7.93

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 26 - 101 4.2e-06 Eukaryotic protein of unknown function (DUF829)
DUF829 PF05705 131 - 379 2.9e-24 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
AccB7I CCANNNNNTGG 1 cut(s) 1205
AccII CGCG 1 cut(s) 24
AciI CCGC 4 cut(s) 17, 24, 27, 30
AclI AACGTT 2 cut(s) 685, 1125
AclWI GGATC 2 cut(s) 27, 41
AcsI RAATTY 2 cut(s) 828, 1192
AcuI CTGAAG 1 cut(s) 582
AdeI CACNNNGTG 2 cut(s) 1082, 1205
AfaI GTAC 4 cut(s) 298, 314, 1003, 1086
AfiI CCNNNNNNNGG 4 cut(s) 52, 579, 743, 1205
AgsI TTSAA 5 cut(s) 118, 335, 560, 833, 842
AjnI CCWGG 3 cut(s) 89, 183, 481
AloI GAACNNNNNNTCC 2 cut(s) 1130, 1162
AluBI AGCT 7 cut(s) 123, 238, 250, 305, 355, 715, 838
AluI AGCT 7 cut(s) 123, 238, 250, 305, 355, 715, 838
Alw21I GWGCWC 3 cut(s) 616, 635, 1078
Alw26I GTCTC 2 cut(s) 61, 1161
Alw44I GTGCAC 1 cut(s) 1074
AlwI GGATC 2 cut(s) 27, 41
AlwNI CAGNNNCTG 2 cut(s) 589, 1010
Ama87I CYCGRG 2 cut(s) 104, 1228
AoxI GGCC 4 cut(s) 43, 349, 415, 1216
ApaLI GTGCAC 1 cut(s) 1074
ApeKI GCWGC 4 cut(s) 14, 806, 911, 1168
ApoI RAATTY 2 cut(s) 828, 1192
AspA2I CCTAGG 1 cut(s) 742
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 43, 416
AsuC2I CCSGG 3 cut(s) 197, 363, 419
AsuHPI GGTGA 5 cut(s) 377, 391, 716, 731, 1188
AvaI CYCGRG 2 cut(s) 104, 1228
AvrII CCTAGG 1 cut(s) 742
BaeGI GKGCMC 1 cut(s) 1078
BauI CACGAG 1 cut(s) 1203
Bbv12I GWGCWC 3 cut(s) 616, 635, 1078
BbvI GCAGC 3 cut(s) 818, 923, 1180
BccI CCATC 1 cut(s) 1124
BceAI ACGGC 3 cut(s) 62, 247, 899
BciT130I CCWGG 3 cut(s) 91, 185, 483
BcnI CCSGG 3 cut(s) 197, 363, 419
BcoDI GTCTC 2 cut(s) 61, 1161
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 1 cut(s) 270
BfoI RGCGCY 1 cut(s) 112
BglII AGATCT 1 cut(s) 776
BisI GCNGC 6 cut(s) 15, 25, 28, 807, 912, 1169
BlnI CCTAGG 1 cut(s) 742
BlsI GCNGC 6 cut(s) 16, 26, 29, 808, 913, 1170
Bme1390I CCNGG 6 cut(s) 91, 185, 197, 363, 419, 483
BmeT110I CYCGRG 2 cut(s) 104, 1228
BmgT120I GGNCC 2 cut(s) 43, 416
BmiI GGNNCC 2 cut(s) 44, 733
BmrFI CCNGG 6 cut(s) 91, 185, 197, 363, 419, 483
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 5 cut(s) 81, 468, 526, 818, 1187
BmuI ACTGGG 1 cut(s) 49
BpmI CTGGAG 2 cut(s) 167, 887
Bpu10I CCTNAGC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 818
BpuMI CCSGG 3 cut(s) 197, 363, 419
Bsa29I ATCGAT 1 cut(s) 812
BsaBI GATNNNNATC 1 cut(s) 559
BsaI GGTCTC 2 cut(s) 61, 1161
BsaJI CCNNGG 3 cut(s) 90, 439, 742
BsaWI WCCGGW 1 cut(s) 395
BsaXI ACNNNNNCTCC 2 cut(s) 693, 723
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 579, 743, 1205
Bse1I ACTGG 2 cut(s) 44, 859
Bse3DI GCAATG 2 cut(s) 519, 1016
Bse8I GATNNNNATC 1 cut(s) 559
BseBI CCWGG 3 cut(s) 91, 185, 483
BseCI ATCGAT 1 cut(s) 812
BseDI CCNNGG 3 cut(s) 90, 439, 742
BseGI GGATG 1 cut(s) 541
BseJI GATNNNNATC 1 cut(s) 559
BseLI CCNNNNNNNGG 4 cut(s) 52, 579, 743, 1205
BseMI GCAATG 2 cut(s) 519, 1016
BseMII CTCAG 1 cut(s) 949
BseNI ACTGG 2 cut(s) 44, 859
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 1078
BseXI GCAGC 3 cut(s) 818, 923, 1180
BsgI GTGCAG 1 cut(s) 655
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 4 cut(s) 45, 351, 417, 1218
BshVI ATCGAT 1 cut(s) 812
BsiHKAI GWGCWC 3 cut(s) 616, 635, 1078
BsiHKCI CYCGRG 2 cut(s) 104, 1228
BsiSI CCGG 4 cut(s) 197, 362, 396, 419
BslFI GGGAC 1 cut(s) 1100
BslI CCNNNNNNNGG 4 cut(s) 52, 579, 743, 1205
BsmAI GTCTC 2 cut(s) 61, 1161
BsmFI GGGAC 1 cut(s) 1100
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 4 cut(s) 45, 351, 417, 1218
Bso31I GGTCTC 2 cut(s) 61, 1161
BsoBI CYCGRG 2 cut(s) 104, 1228
Bsp1286I GDGCHC 3 cut(s) 616, 635, 1078
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 7 cut(s) 19, 33, 646, 776, 898, 961, 1040
BspACI CCGC 4 cut(s) 17, 24, 27, 30
BspANI GGCC 4 cut(s) 45, 351, 417, 1218
BspCNI CTCAG 1 cut(s) 948
BspDI ATCGAT 1 cut(s) 812
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 44, 733
BspPI GGATC 2 cut(s) 27, 41
BspQI GCTCTTC 1 cut(s) 113
BspTNI GGTCTC 2 cut(s) 61, 1161
BsrDI GCAATG 2 cut(s) 519, 1016
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 2 cut(s) 44, 859
BssECI CCNNGG 3 cut(s) 90, 439, 742
BssMI GATC 7 cut(s) 19, 33, 646, 776, 898, 961, 1040
BssSI CACGAG 1 cut(s) 1203
BssT1I CCWWGG 2 cut(s) 439, 742
Bst2BI CACGAG 1 cut(s) 1203
Bst2UI CCWGG 3 cut(s) 91, 185, 483
Bst6I CTCTTC 2 cut(s) 113, 934
BstAUI TGTACA 1 cut(s) 312
BstC8I GCNNGC 3 cut(s) 353, 585, 869
BstDEI CTNAG 4 cut(s) 251, 935, 1070, 1119
BstENI CCTNNNNNAGG 1 cut(s) 741
BstF5I GGATG 1 cut(s) 541
BstFNI CGCG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 7 cut(s) 22, 36, 649, 779, 901, 964, 1043
BstMAI GTCTC 2 cut(s) 61, 1161
BstMBI GATC 7 cut(s) 19, 33, 646, 776, 898, 961, 1040
BstMWI GCNNNNNNNGC 3 cut(s) 14, 864, 1224
BstNI CCWGG 3 cut(s) 91, 185, 483
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 6 cut(s) 89, 183, 195, 361, 417, 481
BstSFI CTRYAG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 1078
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 818, 923, 1180
BstX2I RGATCY 2 cut(s) 33, 776
BstYI RGATCY 2 cut(s) 33, 776
Bsu15I ATCGAT 1 cut(s) 812
BsuRI GGCC 4 cut(s) 45, 351, 417, 1218
BsuTUI ATCGAT 1 cut(s) 812
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 1 cut(s) 1099
BtsIMutI CAGTG 1 cut(s) 1099
Cac8I GCNNGC 3 cut(s) 353, 585, 869
CaiI CAGNNNCTG 2 cut(s) 589, 1010
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 2 cut(s) 43, 416
ClaI ATCGAT 1 cut(s) 812
Csp6I GTAC 4 cut(s) 297, 313, 1002, 1085
CspCI CAANNNNNGTGG 2 cut(s) 1132, 1167
CviAII CATG 6 cut(s) 170, 208, 504, 662, 859, 868
CviQI GTAC 4 cut(s) 297, 313, 1002, 1085
DdeI CTNAG 4 cut(s) 251, 935, 1070, 1119
DpnI GATC 7 cut(s) 21, 35, 648, 778, 900, 963, 1042
DpnII GATC 7 cut(s) 19, 33, 646, 776, 898, 961, 1040
DraIII CACNNNGTG 2 cut(s) 1082, 1205
Eam1104I CTCTTC 2 cut(s) 113, 934
EarI CTCTTC 2 cut(s) 113, 934
Eco130I CCWWGG 2 cut(s) 439, 742
Eco147I AGGCCT 1 cut(s) 1218
Eco31I GGTCTC 2 cut(s) 61, 1161
Eco32I GATATC 3 cut(s) 226, 882, 1141
Eco57I CTGAAG 1 cut(s) 582
Eco88I CYCGRG 2 cut(s) 104, 1228
EcoNI CCTNNNNNAGG 1 cut(s) 741
EcoRI GAATTC 2 cut(s) 828, 1192
EcoRII CCWGG 3 cut(s) 89, 183, 481
EcoRV GATATC 3 cut(s) 226, 882, 1141
EcoT14I CCWWGG 2 cut(s) 439, 742
ErhI CCWWGG 2 cut(s) 439, 742
FaeI CATG 6 cut(s) 173, 211, 507, 665, 862, 871
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 1 cut(s) 1100
FatI CATG 6 cut(s) 169, 207, 503, 661, 858, 867
FauI CCCGC 1 cut(s) 23
Fnu4HI GCNGC 6 cut(s) 15, 25, 28, 807, 912, 1169
FokI GGATG 1 cut(s) 548
Fsp4HI GCNGC 6 cut(s) 15, 25, 28, 807, 912, 1169
FspBI CTAG 1 cut(s) 743
GlaI GCGC 1 cut(s) 110
GluI GCNGC 6 cut(s) 15, 25, 28, 807, 912, 1169
GsuI CTGGAG 2 cut(s) 167, 887
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 4 cut(s) 45, 351, 417, 1218
HapII CCGG 4 cut(s) 197, 362, 396, 419
HhaI GCGC 1 cut(s) 111
Hin1II CATG 6 cut(s) 173, 211, 507, 665, 862, 871
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 2 cut(s) 683, 919
HindII GTYRAC 2 cut(s) 683, 919
HindIII AAGCTT 3 cut(s) 303, 713, 836
HinfI GANTC 5 cut(s) 100, 339, 410, 560, 1007
HpaI GTTAAC 1 cut(s) 919
HpaII CCGG 4 cut(s) 197, 362, 396, 419
HphI GGTGA 5 cut(s) 377, 391, 716, 731, 1188
Hpy166II GTNNAC 5 cut(s) 683, 689, 919, 1076, 1085
Hpy188I TCNGA 4 cut(s) 327, 886, 938, 1161
Hpy188III TCNNGA 4 cut(s) 104, 797, 904, 1230
Hpy8I GTNNAC 5 cut(s) 683, 689, 919, 1076, 1085
Hpy99I CGWCG 2 cut(s) 217, 1227
HpyAV CCTTC 5 cut(s) 329, 341, 796, 857, 1229
HpyCH4IV ACGT 3 cut(s) 126, 685, 1125
HpyCH4V TGCA 5 cut(s) 672, 947, 1021, 1076, 1178
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 864, 1224
HpyF3I CTNAG 4 cut(s) 251, 935, 1070, 1119
HpySE526I ACGT 3 cut(s) 126, 685, 1125
Hsp92II CATG 6 cut(s) 173, 211, 507, 665, 862, 871
HspAI GCGC 1 cut(s) 109
KspAI GTTAAC 1 cut(s) 919
Kzo9I GATC 7 cut(s) 19, 33, 646, 776, 898, 961, 1040
LguI GCTCTTC 1 cut(s) 113
LmnI GCTCC 4 cut(s) 247, 619, 638, 658
Lsp1109I GCAGC 3 cut(s) 818, 923, 1180
LweI GCATC 5 cut(s) 81, 468, 526, 818, 1187
MaeI CTAG 1 cut(s) 743
MaeII ACGT 3 cut(s) 126, 685, 1125
MaeIII GTNAC 1 cut(s) 784
MalI GATC 7 cut(s) 21, 35, 648, 778, 900, 963, 1042
MboI GATC 7 cut(s) 19, 33, 646, 776, 898, 961, 1040
MboII GAAGA 5 cut(s) 76, 130, 588, 771, 951
MflI RGATCY 2 cut(s) 33, 776
MhlI GDGCHC 3 cut(s) 616, 635, 1078
MluCI AATT 5 cut(s) 130, 722, 757, 828, 1192
MmeI TCCRAC 1 cut(s) 131
MseI TTAA 3 cut(s) 258, 603, 918
MslI CAYNNNNRTG 1 cut(s) 405
MspI CCGG 4 cut(s) 197, 362, 396, 419
MspR9I CCNGG 6 cut(s) 91, 185, 197, 363, 419, 483
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 3 cut(s) 91, 185, 483
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 3 cut(s) 14, 864, 1224
NciI CCSGG 3 cut(s) 197, 363, 419
NdeII GATC 7 cut(s) 19, 33, 646, 776, 898, 961, 1040
NlaIII CATG 6 cut(s) 173, 211, 507, 665, 862, 871
NlaIV GGNNCC 2 cut(s) 44, 733
NmeAIII GCCGAG 1 cut(s) 598
NspI RCATGY 1 cut(s) 871
PaeI GCATGC 1 cut(s) 871
PaeR7I CTCGAG 1 cut(s) 1228
PceI AGGCCT 1 cut(s) 1218
PciSI GCTCTTC 1 cut(s) 113
PctI GAATGC 1 cut(s) 188
PfeI GAWTC 5 cut(s) 100, 339, 410, 560, 1007
PflMI CCANNNNNTGG 1 cut(s) 1205
PkrI GCNGC 6 cut(s) 16, 26, 29, 808, 913, 1170
PsiI TTATAA 1 cut(s) 753
Psp1406I AACGTT 2 cut(s) 685, 1125
Psp6I CCWGG 3 cut(s) 89, 183, 481
PspGI CCWGG 3 cut(s) 89, 183, 481
PspN4I GGNNCC 2 cut(s) 44, 733
PspPI GGNCC 2 cut(s) 43, 416
PstNI CAGNNNCTG 2 cut(s) 589, 1010
PsuI RGATCY 2 cut(s) 33, 776
RsaI GTAC 4 cut(s) 298, 314, 1003, 1086
RsaNI GTAC 4 cut(s) 297, 313, 1002, 1085
RseI CAYNNNNRTG 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 113
SaqAI TTAA 3 cut(s) 258, 603, 918
SatI GCNGC 6 cut(s) 15, 25, 28, 807, 912, 1169
Sau3AI GATC 7 cut(s) 19, 33, 646, 776, 898, 961, 1040
Sau96I GGNCC 2 cut(s) 43, 416
ScrFI CCNGG 6 cut(s) 91, 185, 197, 363, 419, 483
SduI GDGCHC 3 cut(s) 616, 635, 1078
SfaNI GCATC 5 cut(s) 81, 468, 526, 818, 1187
SfcI CTRYAG 1 cut(s) 270
Sfr274I CTCGAG 1 cut(s) 1228
SlaI CTCGAG 1 cut(s) 1228
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 797, 1228
SmoI CTYRAG 2 cut(s) 797, 1228
SphI GCATGC 1 cut(s) 871
Sse9I AATT 5 cut(s) 130, 722, 757, 828, 1192
SseBI AGGCCT 1 cut(s) 1218
SsiI CCGC 4 cut(s) 17, 24, 27, 30
SspMI CTAG 1 cut(s) 743
StuI AGGCCT 1 cut(s) 1218
StyD4I CCNGG 6 cut(s) 89, 183, 195, 361, 417, 481
StyI CCWWGG 2 cut(s) 439, 742
TaiI ACGT 3 cut(s) 129, 688, 1128
TaqI TCGA 4 cut(s) 98, 553, 812, 1229
TasI AATT 5 cut(s) 130, 722, 757, 828, 1192
TatI WGTACW 2 cut(s) 312, 1084
TauI GCSGC 2 cut(s) 27, 30
TfiI GAWTC 5 cut(s) 100, 339, 410, 560, 1007
Tru1I TTAA 3 cut(s) 258, 603, 918
Tru9I TTAA 3 cut(s) 258, 603, 918
TscAI CASTG 1 cut(s) 1099
TseI GCWGC 4 cut(s) 14, 806, 911, 1168
TspDTI ATGAA 2 cut(s) 477, 492
TspRI CASTG 1 cut(s) 1099
Van91I CCANNNNNTGG 1 cut(s) 1205
VneI GTGCAC 1 cut(s) 1074
XagI CCTNNNNNAGG 1 cut(s) 741
XapI RAATTY 2 cut(s) 828, 1192
XceI RCATGY 1 cut(s) 871
XhoI CTCGAG 1 cut(s) 1228
XmaJI CCTAGG 1 cut(s) 742
XspI CTAG 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.