Rorug05G0579400

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000561
Physical Location & Seq
Forward (+)
77556039 .. 77559665
3627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0579400.1

Sequence Viewer

Length: 882 bp
ATGTACCGCATAGCTTCATCCTTCGCCTCTTCAACTCCTAAGAAGCTGCAGGTCCTCCGCGGTAGTAGGGTTTCATCCAATAGGAACTATGTGGCGCAAGGTCTCACCTTCCACATTGGGCCTCGCGCCGCCTTGTTCGAGGTTGCCGACGCTGCCAAGTCCACCATGGCCGCTCTCCTGCAACGTGTCTCTCACCTCGCGGAGGCCTACGGAGTTACCATGGGATCAAAGGATGCCAAGGGCATTGGTTGTTATGAGGACAAGTACCAGAATGTGAGCGAAACGCTTGCGAAACAGGCTACTAATACTGCTGGAGGAGATGCTGTCTTGACCCAGGCAACAGTCGCAGAATGTTGCCAGTCCATAGGTGCTGGGGTTCCCTCTATTTTTGCAAATGGTCAACGAGAGATTGGAGAGTTCTTAGCAAGGGCATTGGAGAACGTTGAAAAGAAAGGACATGTTATAAGTGAAGATAAAAGTTTCAGTATCGACAGACTGCTCATGTCACCCACATTAAATCAATTGATCCGTCATAATAGAACTGAGAAAAGTCGCACAAACCGTAATCGAGCTTTGGATAAATGCCCCCAAAAGCAAGGAGTATGCCTACGGGTTTTTACGAGAACACCCAAGAAGCCAAATTCAGCTCTGCGTAAGGTAGCCAAAGTAAGGCTGAGCAATCGAAATGATGTATTTTCTTACATTCCAGGTGAAGGTCATAATTTGCAGGAACATTCTATGGTCTTAATAAGAGGGGGCAGAGTGAAAGATTTGCCAGGTGTGAAATTCCACTGTATCAGAGGAGTTAAGGATTTGCTGGGACTTCCAAACCGAAGGAGAGGCCGATCAAAATATGGTGCAGAGAAGCCCAAGAGCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

293

Amino Acids

32.14

Weight (kDa)

10.18

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosom_S12_S23 PF00164 187 - 291 7.6e-37 Ribosomal protein S12/S23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
Acc36I ACCTGC 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 173
AccII CGCG 3 cut(s) 60, 126, 200
AciI CCGC 6 cut(s) 7, 58, 60, 129, 171, 200
AclI AACGTT 1 cut(s) 441
AclWI GGATC 2 cut(s) 232, 520
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 2 cut(s) 640, 785
AfaI GTAC 2 cut(s) 5, 266
AfiI CCNNNNNNNGG 3 cut(s) 202, 669, 713
AflIII ACRYGT 2 cut(s) 184, 457
AgsI TTSAA 2 cut(s) 33, 446
AjnI CCWGG 3 cut(s) 333, 706, 775
AluBI AGCT 4 cut(s) 14, 46, 572, 647
AluI AGCT 4 cut(s) 14, 46, 572, 647
Alw26I GTCTC 2 cut(s) 107, 193
AlwI GGATC 2 cut(s) 232, 520
AoxI GGCC 4 cut(s) 119, 168, 204, 841
ApeKI GCWGC 2 cut(s) 46, 152
ApoI RAATTY 2 cut(s) 640, 785
AspLEI GCGC 3 cut(s) 97, 128, 878
AspS9I GGNCC 2 cut(s) 52, 119
AsuHPI GGTGA 4 cut(s) 97, 185, 498, 722
AvaII GGWCC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 33, 139
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 3 cut(s) 335, 708, 777
BcoDI GTCTC 2 cut(s) 107, 193
BfmI CTRYAG 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 879
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 4 cut(s) 47, 129, 153, 171
BlpI GCTNAGC 1 cut(s) 674
BlsI GCNGC 4 cut(s) 48, 130, 154, 172
Bme1390I CCNGG 3 cut(s) 335, 708, 777
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 52, 119
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 3 cut(s) 335, 708, 777
BmsI GCATC 2 cut(s) 223, 310
BpmI CTGGAG 1 cut(s) 333
Bpu1102I GCTNAGC 1 cut(s) 674
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 5 cut(s) 58, 165, 219, 237, 333
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 669, 713
Bse1I ACTGG 1 cut(s) 358
BseBI CCWGG 3 cut(s) 335, 708, 777
BseDI CCNNGG 5 cut(s) 58, 165, 219, 237, 333
BseGI GGATG 3 cut(s) 17, 74, 238
BseLI CCNNNNNNNGG 3 cut(s) 202, 669, 713
BseMII CTCAG 2 cut(s) 534, 665
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 2 cut(s) 330, 816
BseXI GCAGC 2 cut(s) 33, 139
BseYI CCCAGC 2 cut(s) 371, 817
BsgI GTGCAG 1 cut(s) 879
Bsh1236I CGCG 3 cut(s) 60, 126, 200
BshFI GGCC 4 cut(s) 121, 170, 206, 843
BslFI GGGAC 1 cut(s) 834
BslI CCNNNNNNNGG 3 cut(s) 202, 669, 713
BsmAI GTCTC 2 cut(s) 107, 193
BsmFI GGGAC 1 cut(s) 834
BsnI GGCC 4 cut(s) 121, 170, 206, 843
Bso31I GGTCTC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 224, 525, 845
Bsp1720I GCTNAGC 1 cut(s) 674
Bsp19I CCATGG 2 cut(s) 165, 219
BspACI CCGC 6 cut(s) 7, 58, 60, 129, 171, 200
BspANI GGCC 4 cut(s) 121, 170, 206, 843
BspCNI CTCAG 2 cut(s) 535, 666
BspFNI CGCG 3 cut(s) 60, 126, 200
BspLI GGNNCC 1 cut(s) 378
BspMAI CTGCAG 1 cut(s) 51
BspMI ACCTGC 1 cut(s) 40
BspPI GGATC 2 cut(s) 232, 520
BspTNI GGTCTC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 173
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 5 cut(s) 58, 165, 219, 237, 333
BssMI GATC 3 cut(s) 224, 525, 845
BssT1I CCWWGG 3 cut(s) 165, 219, 237
Bst2UI CCWGG 3 cut(s) 335, 708, 777
Bst4CI ACNGT 3 cut(s) 343, 563, 794
Bst6I CTCTTC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 4 cut(s) 39, 421, 543, 674
BstDSI CCRYGG 3 cut(s) 58, 165, 219
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 3 cut(s) 17, 74, 238
BstFNI CGCG 3 cut(s) 60, 126, 200
BstH2I RGCGCY 1 cut(s) 879
BstHHI GCGC 3 cut(s) 97, 128, 878
BstKTI GATC 3 cut(s) 227, 528, 848
BstMAI GTCTC 2 cut(s) 107, 193
BstMBI GATC 3 cut(s) 224, 525, 845
BstMWI GCNNNNNNNGC 3 cut(s) 152, 296, 344
BstNI CCWGG 3 cut(s) 335, 708, 777
BstNSI RCATGY 1 cut(s) 461
BstSCI CCNGG 3 cut(s) 333, 706, 775
BstSFI CTRYAG 1 cut(s) 47
BstUI CGCG 3 cut(s) 60, 126, 200
BstV1I GCAGC 2 cut(s) 33, 139
BsuRI GGCC 4 cut(s) 121, 170, 206, 843
BtgI CCRYGG 3 cut(s) 58, 165, 219
BtsCI GGATG 3 cut(s) 17, 74, 238
BtsIMutI CAGTG 1 cut(s) 790
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 288
CfoI GCGC 3 cut(s) 97, 128, 878
Cfr13I GGNCC 2 cut(s) 52, 119
Cfr42I CCGCGG 1 cut(s) 61
CseI GACGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 4, 265
CviAII CATG 4 cut(s) 166, 220, 458, 502
CviQI GTAC 2 cut(s) 4, 265
DdeI CTNAG 4 cut(s) 39, 421, 543, 674
DpnI GATC 3 cut(s) 226, 527, 847
DpnII GATC 3 cut(s) 224, 525, 845
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco130I CCWWGG 3 cut(s) 165, 219, 237
Eco147I AGGCCT 1 cut(s) 206
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 52
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 3 cut(s) 333, 706, 775
EcoT14I CCWWGG 3 cut(s) 165, 219, 237
ErhI CCWWGG 3 cut(s) 165, 219, 237
FaeI CATG 4 cut(s) 169, 223, 461, 505
FaqI GGGAC 1 cut(s) 834
FatI CATG 4 cut(s) 165, 219, 457, 501
Fnu4HI GCNGC 4 cut(s) 47, 129, 153, 171
FokI GGATG 3 cut(s) 4, 61, 245
Fsp4HI GCNGC 4 cut(s) 47, 129, 153, 171
GlaI GCGC 3 cut(s) 96, 127, 877
GluI GCNGC 4 cut(s) 47, 129, 153, 171
GsaI CCCAGC 2 cut(s) 375, 821
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 1 cut(s) 879
HaeIII GGCC 4 cut(s) 121, 170, 206, 843
HgaI GACGC 1 cut(s) 158
HhaI GCGC 3 cut(s) 97, 128, 878
Hin1II CATG 4 cut(s) 169, 223, 461, 505
Hin6I GCGC 3 cut(s) 95, 126, 876
HinP1I GCGC 3 cut(s) 95, 126, 876
HincII GTYRAC 1 cut(s) 401
HindII GTYRAC 1 cut(s) 401
HphI GGTGA 4 cut(s) 97, 185, 498, 722
Hpy166II GTNNAC 2 cut(s) 162, 401
Hpy188I TCNGA 1 cut(s) 800
Hpy188III TCNNGA 1 cut(s) 328
Hpy8I GTNNAC 2 cut(s) 162, 401
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 4 cut(s) 31, 118, 707, 828
HpyCH4III ACNGT 3 cut(s) 343, 563, 794
HpyCH4IV ACGT 2 cut(s) 184, 441
HpyCH4V TGCA 5 cut(s) 49, 181, 392, 727, 860
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 296, 344
HpyF3I CTNAG 4 cut(s) 39, 421, 543, 674
HpySE526I ACGT 2 cut(s) 184, 441
Hsp92II CATG 4 cut(s) 169, 223, 461, 505
HspAI GCGC 3 cut(s) 95, 126, 876
KspI CCGCGG 1 cut(s) 61
Kzo9I GATC 3 cut(s) 224, 525, 845
Lsp1109I GCAGC 2 cut(s) 33, 139
LweI GCATC 2 cut(s) 223, 310
MaeII ACGT 2 cut(s) 184, 441
MaeIII GTNAC 2 cut(s) 214, 504
MalI GATC 3 cut(s) 226, 527, 847
MbiI CCGCTC 1 cut(s) 173
MboI GATC 3 cut(s) 224, 525, 845
MboII GAAGA 2 cut(s) 21, 482
MfeI CAATTG 1 cut(s) 521
MluCI AATT 4 cut(s) 521, 640, 721, 785
MseI TTAA 3 cut(s) 515, 746, 807
MspA1I CMGCKG 1 cut(s) 60
MspR9I CCNGG 3 cut(s) 335, 708, 777
MunI CAATTG 1 cut(s) 521
MvaI CCWGG 3 cut(s) 335, 708, 777
MvnI CGCG 3 cut(s) 60, 126, 200
MwoI GCNNNNNNNGC 3 cut(s) 152, 296, 344
NcoI CCATGG 2 cut(s) 165, 219
NdeII GATC 3 cut(s) 224, 525, 845
NlaIII CATG 4 cut(s) 169, 223, 461, 505
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 504
NspI RCATGY 1 cut(s) 461
PceI AGGCCT 1 cut(s) 206
PciI ACATGT 1 cut(s) 457
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 559
PkrI GCNGC 4 cut(s) 48, 130, 154, 172
PpuMI RGGWCCY 1 cut(s) 52
PscI ACATGT 1 cut(s) 457
PsiI TTATAA 1 cut(s) 464
Psp1406I AACGTT 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 3 cut(s) 333, 706, 775
PspFI CCCAGC 2 cut(s) 371, 817
PspGI CCWGG 3 cut(s) 333, 706, 775
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 2 cut(s) 52, 119
PspPPI RGGWCCY 1 cut(s) 52
PstI CTGCAG 1 cut(s) 51
RsaI GTAC 2 cut(s) 5, 266
RsaNI GTAC 2 cut(s) 4, 265
SacII CCGCGG 1 cut(s) 61
SaqAI TTAA 3 cut(s) 515, 746, 807
SatI GCNGC 4 cut(s) 47, 129, 153, 171
Sau3AI GATC 3 cut(s) 224, 525, 845
Sau96I GGNCC 2 cut(s) 52, 119
ScrFI CCNGG 3 cut(s) 335, 708, 777
SfaNI GCATC 2 cut(s) 223, 310
SfcI CTRYAG 1 cut(s) 47
Sfr303I CCGCGG 1 cut(s) 61
SgrBI CCGCGG 1 cut(s) 61
SinI GGWCC 1 cut(s) 52
Sse9I AATT 4 cut(s) 521, 640, 721, 785
SseBI AGGCCT 1 cut(s) 206
SsiI CCGC 6 cut(s) 7, 58, 60, 129, 171, 200
StuI AGGCCT 1 cut(s) 206
StyD4I CCNGG 3 cut(s) 333, 706, 775
StyI CCWWGG 3 cut(s) 165, 219, 237
TaaI ACNGT 3 cut(s) 343, 563, 794
TaiI ACGT 2 cut(s) 187, 444
TaqI TCGA 4 cut(s) 138, 489, 568, 682
TasI AATT 4 cut(s) 521, 640, 721, 785
TauI GCSGC 2 cut(s) 131, 173
Tru1I TTAA 3 cut(s) 515, 746, 807
Tru9I TTAA 3 cut(s) 515, 746, 807
TscAI CASTG 1 cut(s) 797
TseFI GTSAC 1 cut(s) 504
TseI GCWGC 2 cut(s) 46, 152
Tsp45I GTSAC 1 cut(s) 504
TspDTI ATGAA 2 cut(s) 6, 63
TspGWI ACGGA 2 cut(s) 225, 518
TspRI CASTG 1 cut(s) 797
VpaK11BI GGWCC 1 cut(s) 52
XagI CCTNNNNNAGG 1 cut(s) 200
XapI RAATTY 2 cut(s) 640, 785
XceI RCATGY 1 cut(s) 461
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.