Rh6AG097000

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000561
Physical Location & Seq
Reverse (-)
14276956 .. 14278281
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG097000.1

Sequence Viewer

Length: 318 bp
ATGATACCTTCTGATGTTGTCAAGAGCAAATCTAGTTTGACGTTGCCCAAGCAATTCTGCATTGAACATTTGCCAAAACATGATAGAAAATTAATCTTGGAACATGAAAGTGGAAGAGAATATATAGTGAATTATCTTGGGAAATATAGACGACTTAGTGGTGGATGGAGAAGGTTTTGTACCGATAGCAGATTACTTGAAGGTGATCTCTTAGTTTTCCAGTGGGTGAGGCCCTTGAGGTTTAAGGTTTACAAAGTCGAACAAGAGACTCTGAATGAAGTTAATGCTGCCTTTACCCTGTTGGGGTTGAGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

105

Amino Acids

12.32

Weight (kDa)

9.43

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 2 - 82 1.5e-16 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 303
AgsI TTSAA 2 cut(s) 65, 200
Alw26I GTCTC 1 cut(s) 260
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 287
AseI ATTAAT 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 215, 238
BarI GAAGNNNNNNTAC 2 cut(s) 163, 195
BbvI GCAGC 1 cut(s) 274
BccI CCATC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 1 cut(s) 33
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 274
BshFI GGCC 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 1 cut(s) 232
Bsp143I GATC 1 cut(s) 205
BspANI GGCC 1 cut(s) 232
BsrI ACTGG 1 cut(s) 220
BssMI GATC 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 155, 211
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 274
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 180
CviAII CATG 2 cut(s) 80, 104
CviJI RGCY 1 cut(s) 232
CviKI_1 RGCY 1 cut(s) 232
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 2 cut(s) 155, 211
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 231
FaeI CATG 2 cut(s) 83, 107
FaiI YATR 6 cut(s) 81, 105, 123, 125, 147, 316
FatI CATG 2 cut(s) 79, 103
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 33
GluI GCNGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 2 cut(s) 83, 107
HinfI GANTC 2 cut(s) 268, 310
HphI GGTGA 2 cut(s) 215, 238
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 13, 273
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 18, 165, 194
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 1 cut(s) 60
HpyF3I CTNAG 2 cut(s) 155, 211
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 2 cut(s) 83, 107
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 2 cut(s) 233, 311
Lsp1109I GCAGC 1 cut(s) 274
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 41
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 126
MluCI AATT 3 cut(s) 53, 89, 130
MlyI GAGTC 1 cut(s) 262
MnlI CCTC 2 cut(s) 222, 231
MseI TTAA 3 cut(s) 92, 243, 282
MslI CAYNNNNRTG 1 cut(s) 108
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 83, 107
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 92
PspPI GGNCC 1 cut(s) 231
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 3 cut(s) 92, 243, 282
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 1 cut(s) 262
SetI ASST 6 cut(s) 10, 44, 176, 205, 242, 249
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 3 cut(s) 53, 89, 130
SspMI CTAG 1 cut(s) 33
TaiI ACGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 258
TasI AATT 3 cut(s) 53, 89, 130
Tru1I TTAA 3 cut(s) 92, 243, 282
Tru9I TTAA 3 cut(s) 92, 243, 282
TscAI CASTG 1 cut(s) 227
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 120, 291
TspRI CASTG 1 cut(s) 227
VspI ATTAAT 1 cut(s) 92
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.