RchiOBHm_Chr6g0258211

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000561
Physical Location & Seq
Reverse (-)
13577946 .. 13580427
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23153

Sequence Viewer

Length: 1023 bp
ATGAATGACAGGGAGGAGGAAATGTCCGAGGATTTCCGAGAAGAAAAACAGGAGGAGGAGAAGGACAGGATGGACATTTCCCCGCTCTCTGTCACCAGACAACAATTTGACAATTTGACCCTCCATTCAACATTCTCGGTACAGCAGAGGAAGCGCTCTAAGATCCGGACAAGTCGATTTAGTCCAACCCAAATTGTCAAATTCCAAAATTTGACCCTTGATTCTCCAAACTCGGAACAGAGGCAGCCATTGGCGGAAGCTAACAAATATGGGTTCAAAACTCCCAAAGGGAAAAGACATTTGAGTCCAGACCTTAACACCAAGCGAGAAGTTTCTAGTGATCCTCAGAGGCATGGAGGCTGCAAACGGAGTCGAACCAACCCGTCCATGTCCTGGCATTTTGGCCATCCTGAAGAGTCTCCTGTCAAAAGCCAAGTTAGAGAAATCCCAGAGAATCTAGAAGCCGAATGTCCCTTCTTTATGAAGTCCATGATACGATCAAATATTTCCGTTTGCTTTATGTTGACACTGCCTAGGAGATTCTGCAACTTGCATTTACCTTTGCATGGTACAGCAACAATAACATTGGAAGATAAAGAAGGGAAAGAATATGAAACAAAATTTCTTGCGGACAAAAGGACGCTGAGTGGTGGATGGAAAGGATTTTGTCAGGCAAAAGACTTGCGTCTTGATGATGTTCTAGTTTTCCAGTTGGTTAGCCCTTTGAAGTTCAAGGTGTACAGATTGAGACCAGAATATGATCCAAGTGAAGATGATGTAGATGCAGCTTTTGTCCTCTTGAAAATGAGTACCTCTGAACAAACACTGTCTGGAAAACCCTCCAATGCAGAGGAAAACCCTGCAAACCTGACAAGCTCATCATTTGTAGATGATGATGAGTCTGAGGATCAGATTACAGAGATAAGGAATTTGGCTCCAATCATGGTGGTGGATTTAATCCGGCCAGGACAAGCTGCTGATTTTGAAGATGTTAGAAGTTATGAGAATTTCGCCAGTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

340

Amino Acids

39.08

Weight (kDa)

5.57

Isoelectric Point (pI)

64.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 160 - 245 1.8e-15 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 303
AccB7I CCANNNNNTGG 1 cut(s) 393
AccBSI CCGCTC 1 cut(s) 85
AccIII TCCGGA 1 cut(s) 165
AciI CCGC 3 cut(s) 83, 254, 629
AclWI GGATC 4 cut(s) 157, 335, 755, 915
AcoI YGGCCR 2 cut(s) 403, 962
AcsI RAATTY 5 cut(s) 200, 208, 620, 928, 1006
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 5 cut(s) 141, 571, 740, 811, 1018
AfeI AGCGCT 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 393, 566
AgsI TTSAA 6 cut(s) 129, 277, 727, 733, 802, 986
AjnI CCWGG 2 cut(s) 392, 964
AluBI AGCT 4 cut(s) 260, 788, 876, 974
AluI AGCT 4 cut(s) 260, 788, 876, 974
Alw26I GTCTC 2 cut(s) 423, 742
AlwI GGATC 4 cut(s) 157, 335, 755, 915
Aor13HI TCCGGA 1 cut(s) 165
Aor51HI AGCGCT 1 cut(s) 155
AoxI GGCC 2 cut(s) 403, 962
ApeKI GCWGC 4 cut(s) 244, 360, 785, 974
ApoI RAATTY 5 cut(s) 200, 208, 620, 928, 1006
AspA2I CCTAGG 1 cut(s) 533
AspLEI GCGC 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 85
AvrII CCTAGG 1 cut(s) 533
BalI TGGCCA 1 cut(s) 405
BbvI GCAGC 4 cut(s) 256, 347, 797, 961
BccI CCATC 3 cut(s) 64, 414, 648
BciT130I CCWGG 2 cut(s) 394, 966
BcoDI GTCTC 2 cut(s) 423, 742
BfaI CTAG 4 cut(s) 336, 458, 534, 701
BfoI RGCGCY 1 cut(s) 157
BisI GCNGC 4 cut(s) 245, 361, 786, 975
BlnI CCTAGG 1 cut(s) 533
BlsI GCNGC 4 cut(s) 246, 362, 787, 976
Bme1390I CCNGG 2 cut(s) 394, 966
BmiI GGNNCC 1 cut(s) 936
BmrFI CCNGG 2 cut(s) 394, 966
BmsI GCATC 1 cut(s) 772
BoxI GACNNNNGTC 1 cut(s) 684
BsaAI YACGTR 1 cut(s) 1020
BsaI GGTCTC 1 cut(s) 742
BsaJI CCNNGG 2 cut(s) 27, 533
BsaWI WCCGGW 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 2 cut(s) 393, 566
Bse1I ACTGG 2 cut(s) 709, 1014
BseAI TCCGGA 1 cut(s) 165
BseBI CCWGG 2 cut(s) 394, 966
BseDI CCNNGG 2 cut(s) 27, 533
BseGI GGATG 3 cut(s) 75, 406, 659
BseLI CCNNNNNNNGG 2 cut(s) 393, 566
BseMII CTCAG 3 cut(s) 359, 635, 894
BseNI ACTGG 2 cut(s) 709, 1014
BseRI GAGGAG 3 cut(s) 29, 68, 71
BseXI GCAGC 4 cut(s) 256, 347, 797, 961
BshFI GGCC 2 cut(s) 405, 964
BsiSI CCGG 2 cut(s) 166, 961
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 2 cut(s) 393, 566
BsmAI GTCTC 2 cut(s) 423, 742
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 2 cut(s) 405, 964
Bso31I GGTCTC 1 cut(s) 742
Bsp13I TCCGGA 1 cut(s) 165
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 5 cut(s) 162, 340, 497, 760, 907
BspACI CCGC 3 cut(s) 83, 254, 629
BspANI GGCC 2 cut(s) 405, 964
BspCNI CTCAG 3 cut(s) 358, 636, 895
BspEI TCCGGA 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 936
BspPI GGATC 4 cut(s) 157, 335, 755, 915
BspTNI GGTCTC 1 cut(s) 742
BsrBI CCGCTC 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 2 cut(s) 709, 1014
BssECI CCNNGG 2 cut(s) 27, 533
BssMI GATC 5 cut(s) 162, 340, 497, 760, 907
BssT1I CCWWGG 1 cut(s) 533
Bst2UI CCWGG 2 cut(s) 394, 966
Bst4CI ACNGT 1 cut(s) 828
Bst6I CTCTTC 1 cut(s) 408
BstAUI TGTACA 1 cut(s) 738
BstBAI YACGTR 1 cut(s) 1020
BstDEI CTNAG 4 cut(s) 159, 345, 644, 903
BstF5I GGATG 3 cut(s) 75, 406, 659
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 5 cut(s) 165, 343, 500, 763, 910
BstMAI GTCTC 2 cut(s) 423, 742
BstMBI GATC 5 cut(s) 162, 340, 497, 760, 907
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 2 cut(s) 394, 966
BstPAI GACNNNNGTC 1 cut(s) 684
BstSCI CCNGG 2 cut(s) 392, 964
BstV1I GCAGC 4 cut(s) 256, 347, 797, 961
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuRI GGCC 2 cut(s) 405, 964
BtsCI GGATG 3 cut(s) 75, 406, 659
BtsI GCAGTG 1 cut(s) 527
BtsIMutI CAGTG 2 cut(s) 527, 824
CfoI GCGC 1 cut(s) 156
CseI GACGC 2 cut(s) 649, 674
Csp6I GTAC 5 cut(s) 140, 570, 739, 810, 1017
CspCI CAANNNNNGTGG 2 cut(s) 927, 962
CviAII CATG 5 cut(s) 353, 388, 490, 566, 943
CviQI GTAC 5 cut(s) 140, 570, 739, 810, 1017
DdeI CTNAG 4 cut(s) 159, 345, 644, 903
DpnI GATC 5 cut(s) 164, 342, 499, 762, 909
DpnII GATC 5 cut(s) 162, 340, 497, 760, 907
DrdI GACNNNNNNGTC 1 cut(s) 303
DseDI GACNNNNNNGTC 1 cut(s) 303
EaeI YGGCCR 2 cut(s) 403, 962
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
EciI GGCGGA 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 742
Eco47III AGCGCT 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 432
EcoRII CCWGG 2 cut(s) 392, 964
EcoT14I CCWWGG 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 533
FaeI CATG 5 cut(s) 356, 391, 493, 569, 946
FaqI GGGAC 1 cut(s) 456
FatI CATG 5 cut(s) 352, 387, 489, 565, 942
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 245, 361, 786, 975
FokI GGATG 3 cut(s) 82, 393, 666
Fsp4HI GCNGC 4 cut(s) 245, 361, 786, 975
FspBI CTAG 4 cut(s) 336, 458, 534, 701
GlaI GCGC 1 cut(s) 155
GluI GCNGC 4 cut(s) 245, 361, 786, 975
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 2 cut(s) 405, 964
HapII CCGG 2 cut(s) 166, 961
HgaI GACGC 2 cut(s) 649, 674
HhaI GCGC 1 cut(s) 156
Hin1II CATG 5 cut(s) 356, 391, 493, 569, 946
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 7 cut(s) 221, 304, 370, 416, 454, 540, 899
HpaII CCGG 2 cut(s) 166, 961
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 525, 739
Hpy188I TCNGA 7 cut(s) 28, 38, 235, 348, 817, 904, 912
Hpy188III TCNNGA 7 cut(s) 166, 308, 410, 458, 689, 799, 831
Hpy8I GTNNAC 2 cut(s) 525, 739
HpyAV CCTTC 3 cut(s) 55, 484, 593
HpyCH4III ACNGT 1 cut(s) 828
HpyCH4IV ACGT 1 cut(s) 1019
HpyCH4V TGCA 7 cut(s) 363, 546, 553, 565, 785, 848, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 4 cut(s) 159, 345, 644, 903
HpySE526I ACGT 1 cut(s) 1019
Hsp92II CATG 5 cut(s) 356, 391, 493, 569, 946
HspAI GCGC 1 cut(s) 154
Kpn2I TCCGGA 1 cut(s) 165
Kzo9I GATC 5 cut(s) 162, 340, 497, 760, 907
LmnI GCTCC 1 cut(s) 940
Lsp1109I GCAGC 4 cut(s) 256, 347, 797, 961
LweI GCATC 1 cut(s) 772
MaeI CTAG 4 cut(s) 336, 458, 534, 701
MaeII ACGT 1 cut(s) 1019
MaeIII GTNAC 1 cut(s) 91
MalI GATC 5 cut(s) 164, 342, 499, 762, 909
MbiI CCGCTC 1 cut(s) 85
MboI GATC 5 cut(s) 162, 340, 497, 760, 907
MboII GAAGA 5 cut(s) 53, 425, 602, 782, 998
MflI RGATCY 1 cut(s) 162
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 8 cut(s) 104, 112, 192, 200, 208, 620, 928, 1006
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 4 cut(s) 313, 379, 425, 908
MmeI TCCRAC 1 cut(s) 209
Mox20I TGGCCA 1 cut(s) 405
MroI TCCGGA 1 cut(s) 165
MscI TGGCCA 1 cut(s) 405
MseI TTAA 2 cut(s) 315, 956
MslI CAYNNNNRTG 1 cut(s) 947
Msp20I TGGCCA 1 cut(s) 405
MspI CCGG 2 cut(s) 166, 961
MspR9I CCNGG 2 cut(s) 394, 966
MvaI CCWGG 2 cut(s) 394, 966
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 5 cut(s) 162, 340, 497, 760, 907
NlaIII CATG 5 cut(s) 356, 391, 493, 569, 946
NlaIV GGNNCC 1 cut(s) 936
NmuCI GTSAC 1 cut(s) 91
PfeI GAWTC 3 cut(s) 221, 454, 540
PflMI CCANNNNNTGG 1 cut(s) 393
PkrI GCNGC 4 cut(s) 246, 362, 787, 976
PleI GAGTC 4 cut(s) 312, 378, 424, 907
PpsI GAGTC 4 cut(s) 312, 378, 424, 907
Ppu21I YACGTR 1 cut(s) 1020
PshAI GACNNNNGTC 1 cut(s) 684
Psp6I CCWGG 2 cut(s) 392, 964
PspGI CCWGG 2 cut(s) 392, 964
PspN4I GGNNCC 1 cut(s) 936
PsuI RGATCY 1 cut(s) 162
RsaI GTAC 5 cut(s) 141, 571, 740, 811, 1018
RsaNI GTAC 5 cut(s) 140, 570, 739, 810, 1017
RseI CAYNNNNRTG 1 cut(s) 947
SaqAI TTAA 2 cut(s) 315, 956
SatI GCNGC 4 cut(s) 245, 361, 786, 975
Sau3AI GATC 5 cut(s) 162, 340, 497, 760, 907
SchI GAGTC 4 cut(s) 313, 379, 425, 908
ScrFI CCNGG 2 cut(s) 394, 966
SfaNI GCATC 1 cut(s) 772
SmiMI CAYNNNNRTG 1 cut(s) 947
Sse9I AATT 8 cut(s) 104, 112, 192, 200, 208, 620, 928, 1006
SsiI CCGC 3 cut(s) 83, 254, 629
SspI AATATT 1 cut(s) 505
SspMI CTAG 4 cut(s) 336, 458, 534, 701
StyD4I CCNGG 2 cut(s) 392, 964
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 1 cut(s) 828
TaiI ACGT 1 cut(s) 1022
TaqI TCGA 2 cut(s) 175, 373
TasI AATT 8 cut(s) 104, 112, 192, 200, 208, 620, 928, 1006
TatI WGTACW 1 cut(s) 738
TfiI GAWTC 3 cut(s) 221, 454, 540
Tru1I TTAA 2 cut(s) 315, 956
Tru9I TTAA 2 cut(s) 315, 956
TscAI CASTG 2 cut(s) 534, 831
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 4 cut(s) 244, 360, 785, 974
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 17, 497, 627
TspGWI ACGGA 2 cut(s) 382, 499
TspRI CASTG 2 cut(s) 534, 831
Van91I CCANNNNNTGG 1 cut(s) 393
XapI RAATTY 5 cut(s) 200, 208, 620, 928, 1006
XbaI TCTAGA 1 cut(s) 457
XmaJI CCTAGG 1 cut(s) 533
XspI CTAG 4 cut(s) 336, 458, 534, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.