Rh6CG083900

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000561
Physical Location & Seq
Reverse (-)
9189111 .. 9190327
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG083900.1

Sequence Viewer

Length: 528 bp
ATGAATAAGAAGGAAAAATTCTTCAGGAGTCCCTCAAGTCCGATCCCTAACACCAAGCGAAAAGTTGCAGCTGGTGGTAGTTCCCAAGATCATGAAGGCTACAAATGTAAGAAAACGAAGCCTAATTATCATGAAAAGCCTTCCATAAGAAACAAAGTTCAAGATATCCTGGCAAATCTAGAAGCCAAAAGCCCATTCTTTTTGAAGTGTATGATACCTTCTGATGTTGTCAAGAGCAAATCTAGTTTGACGTTGCCCAAGCAATTCTGCATTGAACATTTGCCAAAACATGATAGAAAATTAATCTTGGAACATGAAAGTGGAAGAGAATATATAGTGAATTATCTTGGGAAATATAGACGACTTAGTGGTGGATGGAGAAGGTTTTGTACCGATAGCAGATTACTTGAAGGTGATCTCTTAGTTTTCCAGTGGGTGAGGCCCTTGAGGTTTAAGGTTTACAAAGTCGAACAAGAGACTCTGAATGAAGTTAATGCTGCCTTTACCCTGTTGGGGTTGAGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

175

Amino Acids

20.28

Weight (kDa)

9.8

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 67 - 151 1.2e-17 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 1 cut(s) 391
AfiI CCNNNNNNNGG 1 cut(s) 513
AgsI TTSAA 4 cut(s) 161, 205, 275, 410
AjnI CCWGG 1 cut(s) 168
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 1 cut(s) 37
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 2 cut(s) 68, 497
ApoI RAATTY 1 cut(s) 17
AseI ATTAAT 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 441
AsuHPI GGTGA 2 cut(s) 425, 448
BarI GAAGNNNNNNTAC 4 cut(s) 202, 234, 373, 405
BbvI GCAGC 2 cut(s) 80, 484
BccI CCATC 1 cut(s) 369
BciT130I CCWGG 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 2 cut(s) 179, 243
BisI GCNGC 2 cut(s) 69, 498
BlsI GCNGC 2 cut(s) 70, 499
Bme1390I CCNGG 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 441
BmrFI CCNGG 1 cut(s) 170
BpuEI CTTGAG 2 cut(s) 19, 466
Bsc4I CCNNNNNNNGG 1 cut(s) 513
Bse1I ACTGG 1 cut(s) 430
BseBI CCWGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 513
BseNI ACTGG 1 cut(s) 430
BseXI GCAGC 2 cut(s) 80, 484
BshFI GGCC 1 cut(s) 442
BslFI GGGAC 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 513
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 15
BsnI GGCC 1 cut(s) 442
Bsp143I GATC 3 cut(s) 42, 88, 415
BspANI GGCC 1 cut(s) 442
BspHI TCATGA 2 cut(s) 91, 130
BspPI GGATC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 430
BssMI GATC 3 cut(s) 42, 88, 415
Bst2UI CCWGG 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 319
BstDEI CTNAG 2 cut(s) 365, 421
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 3 cut(s) 45, 91, 418
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 3 cut(s) 42, 88, 415
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 80, 484
BsuRI GGCC 1 cut(s) 442
BtsCI GGATG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 437
CciI TCATGA 2 cut(s) 91, 130
Cfr13I GGNCC 1 cut(s) 441
Csp6I GTAC 1 cut(s) 390
CviAII CATG 4 cut(s) 92, 131, 290, 314
CviJI RGCY 7 cut(s) 71, 99, 121, 139, 185, 192, 442
CviKI_1 RGCY 7 cut(s) 71, 99, 121, 139, 185, 192, 442
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 2 cut(s) 365, 421
DpnI GATC 3 cut(s) 44, 90, 417
DpnII GATC 3 cut(s) 42, 88, 415
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
Eco32I GATATC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 168
EcoRV GATATC 1 cut(s) 166
FaeI CATG 4 cut(s) 95, 134, 293, 317
FaqI GGGAC 1 cut(s) 15
FatI CATG 4 cut(s) 91, 130, 289, 313
Fnu4HI GCNGC 2 cut(s) 69, 498
FokI GGATG 1 cut(s) 387
Fsp4HI GCNGC 2 cut(s) 69, 498
FspBI CTAG 2 cut(s) 179, 243
GluI GCNGC 2 cut(s) 69, 498
HaeIII GGCC 1 cut(s) 442
Hin1II CATG 4 cut(s) 95, 134, 293, 317
HinfI GANTC 3 cut(s) 28, 478, 520
HphI GGTGA 2 cut(s) 425, 448
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 3 cut(s) 42, 223, 483
Hpy188III TCNNGA 6 cut(s) 25, 92, 131, 161, 179, 232
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 6 cut(s) 4, 89, 150, 228, 375, 404
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 68, 270
HpyF3I CTNAG 2 cut(s) 365, 421
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 4 cut(s) 95, 134, 293, 317
Kzo9I GATC 3 cut(s) 42, 88, 415
LpnPI CCDG 6 cut(s) 10, 57, 155, 182, 443, 521
Lsp1109I GCAGC 2 cut(s) 80, 484
MaeI CTAG 2 cut(s) 179, 243
MaeII ACGT 1 cut(s) 251
MalI GATC 3 cut(s) 44, 90, 417
MboI GATC 3 cut(s) 42, 88, 415
MboII GAAGA 2 cut(s) 13, 336
MluCI AATT 5 cut(s) 17, 124, 263, 299, 340
MlyI GAGTC 2 cut(s) 37, 472
MnlI CCTC 3 cut(s) 43, 432, 441
MseI TTAA 3 cut(s) 302, 453, 492
MslI CAYNNNNRTG 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
NdeII GATC 3 cut(s) 42, 88, 415
NlaIII CATG 4 cut(s) 95, 134, 293, 317
PagI TCATGA 2 cut(s) 91, 130
PkrI GCNGC 2 cut(s) 70, 499
PleI GAGTC 2 cut(s) 36, 472
PpsI GAGTC 2 cut(s) 36, 472
PshBI ATTAAT 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspPI GGNCC 1 cut(s) 441
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
RseI CAYNNNNRTG 1 cut(s) 318
SaqAI TTAA 3 cut(s) 302, 453, 492
SatI GCNGC 2 cut(s) 69, 498
Sau3AI GATC 3 cut(s) 42, 88, 415
Sau96I GGNCC 1 cut(s) 441
SchI GAGTC 2 cut(s) 37, 472
ScrFI CCNGG 1 cut(s) 170
SetI ASST 7 cut(s) 73, 220, 254, 386, 415, 452, 459
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 2 cut(s) 34, 445
SmoI CTYRAG 2 cut(s) 34, 445
Sse9I AATT 5 cut(s) 17, 124, 263, 299, 340
SspMI CTAG 2 cut(s) 179, 243
StyD4I CCNGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 468
TasI AATT 5 cut(s) 17, 124, 263, 299, 340
Tru1I TTAA 3 cut(s) 302, 453, 492
Tru9I TTAA 3 cut(s) 302, 453, 492
TscAI CASTG 1 cut(s) 437
TseI GCWGC 2 cut(s) 68, 497
TspDTI ATGAA 5 cut(s) 17, 108, 147, 330, 501
TspRI CASTG 1 cut(s) 437
VspI ATTAAT 1 cut(s) 302
XapI RAATTY 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 178
XspI CTAG 2 cut(s) 179, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.