Rroxscaffold_7G00208160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000561
Physical Location & Seq
Forward (+)
58163140 .. 58163433
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208160.1

Sequence Viewer

Length: 294 bp
ATGTTGGATTCTTACGTACTGTGCCGAAGCGGCTTCGAGCCTTTCTTTCAGGACCAAACAGGCTCGATAAGGAAATCAAAGGAGGCTAAACTTGAGCAAGCTCGTGCAAAGGACAAGGTGATAACTCTTGAATCCAAGTATTGGAAATGGAAAGAGAGGATGGTAGTGCCCGATGCTAAGATAGAGGCTCTAAAGGAAGTTGCGAGAGGCGTGAACTTTTCTTCCGGGAAGAGGTTGTTGCTCCATGGGGATGAGAAGAGTTGTTTTAGTCAAATAGGACAAGATAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.2

Weight (kDa)

9.17

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 141
AciI CCGC 1 cut(s) 30
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 2 cut(s) 141, 231
AgsI TTSAA 1 cut(s) 131
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 171
BauI CACGAG 1 cut(s) 102
BccI CCATC 1 cut(s) 154
BcnI CCSGG 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 30
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 226
BsaAI YACGTR 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 231
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 165, 256
BseLI CCNNNNNNNGG 2 cut(s) 141, 231
BseSI GKGCMC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 2 cut(s) 141, 231
Bsp1286I GDGCHC 1 cut(s) 171
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 244
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 244
Bst2BI CACGAG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 2 cut(s) 224, 251
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 2 cut(s) 165, 256
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 224
BstSLI GKGCMC 1 cut(s) 171
BstSNI TACGTA 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 2 cut(s) 165, 256
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 17
CviAII CATG 1 cut(s) 245
CviJI RGCY 6 cut(s) 33, 40, 63, 86, 101, 188
CviKI_1 RGCY 6 cut(s) 33, 40, 63, 86, 101, 188
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 224, 251
EarI CTCTTC 2 cut(s) 224, 251
Eco105I TACGTA 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 248
FaiI YATR 1 cut(s) 246
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 2 cut(s) 172, 263
Fsp4HI GCNGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 31
HapII CCGG 1 cut(s) 225
Hin1II CATG 1 cut(s) 248
HinfI GANTC 2 cut(s) 8, 131
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 50, 128
Hpy8I GTNNAC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 248
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 3 cut(s) 35, 45, 238
LweI GCATC 1 cut(s) 163
MaeII ACGT 1 cut(s) 15
MboII GAAGA 3 cut(s) 213, 241, 268
MhlI GDGCHC 1 cut(s) 171
MnlI CCTC 5 cut(s) 76, 150, 178, 200, 225
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 30
NciI CCSGG 1 cut(s) 226
NcoI CCATGG 1 cut(s) 244
NlaIII CATG 1 cut(s) 248
PfeI GAWTC 2 cut(s) 8, 131
PflMI CCANNNNNTGG 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 224
PkrI GCNGC 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 16
PspPI GGNCC 1 cut(s) 52
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 249
SatI GCNGC 1 cut(s) 31
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 171
SetI ASST 4 cut(s) 18, 103, 120, 236
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SnaBI TACGTA 1 cut(s) 16
SsiI CCGC 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 21
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 36, 65
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 2 cut(s) 8, 131
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.