Rorug05G0578700

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000561
Physical Location & Seq
Reverse (-)
77445294 .. 77450458
5165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0578700.1

Sequence Viewer

Length: 2193 bp
ATGGAAGCAAAAAACCCAGTGAAAAAATCGAAACTTGGGAAAAGGAAAAGTGATGAGGGAACCCAGAAAAGCTCTGTAGGTCAAGCGAAACAGCATAAGGAACAACTCGAAAGACTTCATGAAAAGGACCCAGAGTTCTATGATTTCTTAAAAGAGCATGACCAGGAACTTCTGCAGTTTGACGATGAGGACATTGAAGAAGATTCGGATACTAACTTAGAGGATGAAGAGACGCAAGAAGGTGATGAGATAGAAGAGGATGAAGACGCTAGCAATCATGATGTCAAAAAGAAGGAAAAGGAGACGCCGAAAAAAGTTATAACTAGTGAAATGGTTGATTCTTGGTGCAACATGATTCGAGAAACTGGGAAATTGAGTGCTATTCATTCTCTTATGAAAGCTTTCCGCACTGCCTGCCACTATGGTGATGATAAAGAGGACGAGTCTAAGCTAGATTTTAGTATTATGTCTAGCAGTGTCTTTAATAAAGTGATGGTATTTGTACTTAATGAAATGGATGGAATAATTCGGAACTTGTTGGAGCTCCCTGCCTTTGGTGGGAAAAAAGAGACCATAATAGATCTTATGAGCACAAAACGATGGAAGAACTACAACCATTTAGTGAAGTCATATCTTGGAAATGCTTTACATGTCTTGCGTCAAATGACTGACACAGACATGATATCATTTACTTTACGGCGTCTTAAACATTCCTCCATATTTTTGGCTGCTTTTCCGATTCTCCTGAGGAAGTACGTTAAGACTGCCCTTGATTTGTGGGGTTTAGGTGGAGGTGCCCTCCCAATTGCCTCCCTTCTATTTTTAAGAGATCTGTGCATTCGTCTGGGATCTGATTGCTTAGATGAATGCTTCAAGGGGATCTACAAAGCCTATGTCTTGAACTGCCAGTTTATGAATGCAGCAAAATTACAACATGTCCAGTTTCTTGGAAATTGTGTAATTGAACTTTACGGTGTAGACCTTCCGACTGCATATCAACATGCCTTCATTTTCATTCGGCAATTAGCAATGATCTTGCGAGAGGCACTTAGTTCAAAAACGAAGGAAGCATTTAGAAAGGTTTATGAGTGGAAGTTCATGAACTGCCTTGAGCTCTGGACTGGAGCTGTCTGTGCCTACGGCTCAGAAGCTGACTTTAGACCAGTTGTATATCCCCTGACCCAAATAATTTACGGGGCTGCCCGTCTAGTTCCAACAGCTAGGTATTTACCTCTCAGATTGCGTTGTATTAGAATGCTTAATCGAATTGCTGCTTCGACGGGTACTTTCACACCAGTTTCTATGTTGCTTTTGGACATGCTTGAAATGAAAGAATTGAATAGGCCCACCACAGGTGGTGTTGGCAAAGCTGTTGATTTGCGTACTATACTTAAGGTTAGCAAGCCAACCCTGAAGACCCGAGCATTTCAGGAGGCTTGTGTGTTGTCTGTTGTTGATGAGCTTGCTGAGCATTTAGCGCAGTGGAGCTATTCCATTGCTTTCCCTGAGTTGTCCTTTATACCAGGCGTGCGATTGCGTGGCTTTTGCAAATCCACCAAGGTTGAGAGGTTTCGGAGAGCAACAAGGGAGCTTATCCGTCAGATTGAGGCCAATTCGCAGTTTATAACTGAAAGGCGCAAGGCAATCTCATTTCTGCCAAATGATCCTGCAGTTGCATCTTTTCTTGAGGATGAAAAAAGATCAGAGGCTAGCCCTCTATCACAATATGTTTTAAGTCTACGCCAAATAGCGCAACAAAGAAATGATTCTCTGGTGGAATCCAGTGTTCTTGTGGGAGAGAATTCGGCTGTGTTTGGAAAGAGGAAAATACAAGAGAGTGATGAAGAAGATGACACTAGGGACGAGGAAGGCACTACTGTGTTTAGTTCATCCTGGTTACCTGGAGTTGATTCCAAGGATAAAGAACCTAAAGATGTGAAAAAGAAGAAAAAGAGAAAGACTGAGCAGGAGGAACGGGTAGCCATTGATGAAGATATTGTCGAAGATTTGGTACTCAGCTCTGATGAAGAAGATGGGCCTTCAAGTGATGCTCTTTCAGATGCGGATGAAGAAGAGGGAAAGCCAGAACCATTGAAACCGGGAAGTAAGAAGCAGAAACGATTTACAAATCCATCAAAGAAGAATGTAAAATCTCAAGCAAAGAAATCAAGGAAGAGAAAGGGCGTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

730

Amino Acids

83.12

Weight (kDa)

6.53

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Noc2 PF03715 286 - 578 5.2e-106 Noc2p family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 320, 1625
AccB1I GGYRCC 1 cut(s) 794
AccI GTMKAC 2 cut(s) 978, 1738
AciI CCGC 2 cut(s) 406, 2063
AclWI GGATC 3 cut(s) 856, 887, 1658
AcsI RAATTY 1 cut(s) 1801
AcuI CTGAAG 1 cut(s) 1433
AcyI GRCGYC 2 cut(s) 305, 700
AfaI GTAC 5 cut(s) 504, 755, 1285, 1384, 2013
AfiI CCNNNNNNNGG 3 cut(s) 554, 558, 1352
AflII CTTAAG 1 cut(s) 1391
AflIII ACRYGT 2 cut(s) 649, 934
AgsI TTSAA 9 cut(s) 197, 874, 901, 965, 1056, 1325, 1339, 2043, 2095
AhlI ACTAGT 1 cut(s) 323
AjnI CCWGG 4 cut(s) 162, 1522, 1892, 1900
AleI CACNNNNGTG 2 cut(s) 423, 1877
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
Alw21I GWGCWC 3 cut(s) 546, 593, 1116
Alw26I GTCTC 3 cut(s) 224, 296, 563
AlwI GGATC 3 cut(s) 856, 887, 1658
AlwNI CAGNNNCTG 1 cut(s) 1151
Ama87I CYCGRG 1 cut(s) 1419
AoxI GGCC 3 cut(s) 1343, 1608, 2036
ApeKI GCWGC 4 cut(s) 728, 920, 1199, 1271
ApoI RAATTY 1 cut(s) 1801
ArsI GACNNNNNNTTYG 2 cut(s) 879, 911
Asp700I GAANNNNTTC 2 cut(s) 114, 401
AspLEI GCGC 3 cut(s) 1480, 1638, 1753
AspS9I GGNCC 3 cut(s) 127, 1344, 2036
AsuC2I CCSGG 1 cut(s) 2100
AsuHPI GGTGA 2 cut(s) 254, 437
AsuNHI GCTAGC 2 cut(s) 269, 1709
AvaI CYCGRG 1 cut(s) 1419
AvaII GGWCC 1 cut(s) 127
AxyI CCTNAGG 1 cut(s) 746
BaeGI GKGCMC 1 cut(s) 799
BanI GGYRCC 1 cut(s) 794
BanII GRGCYC 2 cut(s) 546, 1116
BarI GAAGNNNNNNTAC 2 cut(s) 1995, 2027
BbsI GAAGAC 2 cut(s) 270, 1421
Bbv12I GWGCWC 3 cut(s) 546, 593, 1116
BbvI GCAGC 4 cut(s) 715, 932, 1186, 1258
BccI CCATC 5 cut(s) 487, 512, 594, 2027, 2140
BceAI ACGGC 2 cut(s) 713, 1156
BciT130I CCWGG 4 cut(s) 164, 1524, 1894, 1902
BciVI GTATCC 1 cut(s) 202
BcnI CCSGG 1 cut(s) 2100
BcoDI GTCTC 3 cut(s) 224, 296, 563
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 8 cut(s) 270, 324, 452, 471, 1208, 1221, 1710, 1857
BfmI CTRYAG 3 cut(s) 75, 173, 1668
BfrI CTTAAG 1 cut(s) 1391
BfuI GTATCC 1 cut(s) 202
BglII AGATCT 2 cut(s) 580, 829
BisI GCNGC 4 cut(s) 729, 921, 1200, 1272
BlpI GCTNAGC 1 cut(s) 1467
BlsI GCNGC 4 cut(s) 730, 922, 1201, 1273
Bme1390I CCNGG 5 cut(s) 164, 1524, 1894, 1902, 2100
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 1419
BmgT120I GGNCC 3 cut(s) 127, 1344, 2036
BmiI GGNNCC 3 cut(s) 61, 129, 796
BmrFI CCNGG 5 cut(s) 164, 1524, 1894, 1902, 2100
BmrI ACTGGG 2 cut(s) 11, 375
BmsI GCATC 3 cut(s) 1685, 2038, 2050
BmtI GCTAGC 2 cut(s) 273, 1713
BmuI ACTGGG 2 cut(s) 11, 375
BpiI GAAGAC 2 cut(s) 270, 1421
BplI GAGNNNNNCTC 2 cut(s) 783, 815
BpmI CTGGAG 2 cut(s) 1143, 1923
Bpu1102I GCTNAGC 1 cut(s) 1467
BpuEI CTTGAG 3 cut(s) 1130, 1706, 2139
BpuMI CCSGG 1 cut(s) 2100
BsaHI GRCGYC 2 cut(s) 305, 700
BsaI GGTCTC 1 cut(s) 563
BsaJI CCNNGG 2 cut(s) 1557, 1914
Bsc4I CCNNNNNNNGG 3 cut(s) 554, 558, 1352
Bse1I ACTGG 8 cut(s) 17, 370, 907, 940, 1126, 1163, 1295, 1782
Bse21I CCTNAGG 1 cut(s) 746
Bse3DI GCAATG 2 cut(s) 1035, 1494
BseBI CCWGG 4 cut(s) 164, 1524, 1894, 1902
BseDI CCNNGG 2 cut(s) 1557, 1914
BseGI GGATG 6 cut(s) 229, 265, 523, 1696, 1889, 2071
BseLI CCNNNNNNNGG 3 cut(s) 554, 558, 1352
BseMI GCAATG 2 cut(s) 1035, 1494
BseMII CTCAG 7 cut(s) 737, 1158, 1249, 1458, 1497, 1953, 2029
BseNI ACTGG 8 cut(s) 17, 370, 907, 940, 1126, 1163, 1295, 1782
BseSI GKGCMC 1 cut(s) 799
BseXI GCAGC 4 cut(s) 715, 932, 1186, 1258
BshFI GGCC 3 cut(s) 1345, 1610, 2038
BshNI GGYRCC 1 cut(s) 794
BsiHKAI GWGCWC 3 cut(s) 546, 593, 1116
BsiHKCI CYCGRG 1 cut(s) 1419
BsiSI CCGG 1 cut(s) 2099
BslFI GGGAC 1 cut(s) 1874
BslI CCNNNNNNNGG 3 cut(s) 554, 558, 1352
BsmAI GTCTC 3 cut(s) 224, 296, 563
BsmBI CGTCTC 2 cut(s) 224, 296
BsmFI GGGAC 1 cut(s) 1874
BsmI GAATGC 4 cut(s) 837, 872, 922, 1260
BsnI GGCC 3 cut(s) 1345, 1610, 2038
Bso31I GGTCTC 1 cut(s) 563
BsoBI CYCGRG 1 cut(s) 1419
Bsp1286I GDGCHC 4 cut(s) 546, 593, 799, 1116
Bsp143I GATC 7 cut(s) 580, 829, 848, 879, 1032, 1663, 1700
Bsp1720I GCTNAGC 1 cut(s) 1467
BspACI CCGC 2 cut(s) 406, 2063
BspANI GGCC 3 cut(s) 1345, 1610, 2038
BspCNI CTCAG 7 cut(s) 738, 1157, 1248, 1459, 1498, 1954, 2028
BspHI TCATGA 3 cut(s) 118, 277, 1098
BspLI GGNNCC 3 cut(s) 61, 129, 796
BspMAI CTGCAG 2 cut(s) 177, 1672
BspOI GCTAGC 2 cut(s) 273, 1713
BspPI GGATC 3 cut(s) 856, 887, 1658
BspT107I GGYRCC 1 cut(s) 794
BspTI CTTAAG 1 cut(s) 1391
BspTNI GGTCTC 1 cut(s) 563
BsrDI GCAATG 2 cut(s) 1035, 1494
BsrI ACTGG 8 cut(s) 17, 370, 907, 940, 1126, 1163, 1295, 1782
BssECI CCNNGG 2 cut(s) 1557, 1914
BssMI GATC 7 cut(s) 580, 829, 848, 879, 1032, 1663, 1700
BssNI GRCGYC 2 cut(s) 305, 700
BssT1I CCWWGG 2 cut(s) 1557, 1914
Bst2UI CCWGG 4 cut(s) 164, 1524, 1894, 1902
Bst4CI ACNGT 2 cut(s) 974, 1879
Bst6I CTCTTC 4 cut(s) 222, 249, 2067, 2168
BstACI GRCGYC 2 cut(s) 305, 700
BstAFI CTTAAG 1 cut(s) 1391
BstAPI GCANNNNNTGC 1 cut(s) 414
BstC8I GCNNGC 6 cut(s) 271, 415, 1403, 1464, 1529, 1711
BstEII GGTNACC 1 cut(s) 1896
BstF5I GGATG 6 cut(s) 229, 265, 523, 1696, 1889, 2071
BstHHI GCGC 3 cut(s) 1480, 1638, 1753
BstKTI GATC 7 cut(s) 583, 832, 851, 882, 1035, 1666, 1703
BstMAI GTCTC 3 cut(s) 224, 296, 563
BstMBI GATC 7 cut(s) 580, 829, 848, 879, 1032, 1663, 1700
BstMWI GCNNNNNNNGC 4 cut(s) 414, 1133, 1468, 1477
BstNI CCWGG 4 cut(s) 164, 1524, 1894, 1902
BstNSI RCATGY 4 cut(s) 653, 938, 1004, 1321
BstPI GGTNACC 1 cut(s) 1896
BstSCI CCNGG 5 cut(s) 162, 1522, 1892, 1900, 2098
BstSFI CTRYAG 3 cut(s) 75, 173, 1668
BstSLI GKGCMC 1 cut(s) 799
BstV1I GCAGC 4 cut(s) 715, 932, 1186, 1258
BstV2I GAAGAC 2 cut(s) 270, 1421
BstX2I RGATCY 4 cut(s) 580, 829, 848, 879
BstXI CCANNNNNNTGG 2 cut(s) 724, 947
BstYI RGATCY 4 cut(s) 580, 829, 848, 879
Bsu36I CCTNAGG 1 cut(s) 746
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 3 cut(s) 1345, 1610, 2038
BtsCI GGATG 6 cut(s) 229, 265, 523, 1696, 1889, 2071
BtsI GCAGTG 3 cut(s) 408, 481, 1487
BtsIMutI CAGTG 5 cut(s) 24, 408, 481, 1487, 1789
Cac8I GCNNGC 6 cut(s) 271, 415, 1403, 1464, 1529, 1711
CaiI CAGNNNCTG 1 cut(s) 1151
CciI TCATGA 3 cut(s) 118, 277, 1098
CfoI GCGC 3 cut(s) 1480, 1638, 1753
Cfr13I GGNCC 3 cut(s) 127, 1344, 2036
CseI GACGC 5 cut(s) 241, 275, 313, 647, 689
Csp6I GTAC 5 cut(s) 503, 754, 1284, 1383, 2012
CspCI CAANNNNNGTGG 2 cut(s) 1543, 1578
CviQI GTAC 5 cut(s) 503, 754, 1284, 1383, 2012
DpnI GATC 7 cut(s) 582, 831, 850, 881, 1034, 1665, 1702
DpnII GATC 7 cut(s) 580, 829, 848, 879, 1032, 1663, 1700
Eam1104I CTCTTC 4 cut(s) 222, 249, 2067, 2168
EarI CTCTTC 4 cut(s) 222, 249, 2067, 2168
Ecl136II GAGCTC 2 cut(s) 544, 1114
Eco130I CCWWGG 2 cut(s) 1557, 1914
Eco24I GRGCYC 2 cut(s) 546, 1116
Eco31I GGTCTC 1 cut(s) 563
Eco32I GATATC 1 cut(s) 684
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 2 cut(s) 544, 1114
Eco57I CTGAAG 1 cut(s) 1433
Eco81I CCTNAGG 1 cut(s) 746
Eco88I CYCGRG 1 cut(s) 1419
Eco91I GGTNACC 1 cut(s) 1896
EcoICRI GAGCTC 2 cut(s) 544, 1114
EcoO109I RGGNCCY 1 cut(s) 127
EcoO65I GGTNACC 1 cut(s) 1896
EcoRI GAATTC 1 cut(s) 1801
EcoRII CCWGG 4 cut(s) 162, 1522, 1892, 1900
EcoRV GATATC 1 cut(s) 684
EcoT14I CCWWGG 2 cut(s) 1557, 1914
EcoT38I GRGCYC 2 cut(s) 546, 1116
ErhI CCWWGG 2 cut(s) 1557, 1914
Esp3I CGTCTC 2 cut(s) 224, 296
FaqI GGGAC 1 cut(s) 1874
FblI GTMKAC 2 cut(s) 978, 1738
Fnu4HI GCNGC 4 cut(s) 729, 921, 1200, 1272
FokI GGATG 6 cut(s) 236, 272, 530, 1703, 1876, 2078
FriOI GRGCYC 2 cut(s) 546, 1116
Fsp4HI GCNGC 4 cut(s) 729, 921, 1200, 1272
FspBI CTAG 8 cut(s) 270, 324, 452, 471, 1208, 1221, 1710, 1857
GlaI GCGC 3 cut(s) 1479, 1637, 1752
GluI GCNGC 4 cut(s) 729, 921, 1200, 1272
GsuI CTGGAG 2 cut(s) 1143, 1923
HaeIII GGCC 3 cut(s) 1345, 1610, 2038
HapII CCGG 1 cut(s) 2099
HgaI GACGC 5 cut(s) 241, 275, 313, 647, 689
HhaI GCGC 3 cut(s) 1480, 1638, 1753
Hin1I GRCGYC 2 cut(s) 305, 700
Hin6I GCGC 3 cut(s) 1478, 1636, 1751
HinP1I GCGC 3 cut(s) 1478, 1636, 1751
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 8 cut(s) 203, 338, 355, 443, 739, 1766, 1778, 1910
HpaII CCGG 1 cut(s) 2099
HphI GGTGA 2 cut(s) 254, 437
Hpy166II GTNNAC 2 cut(s) 979, 1739
Hpy188III TCNNGA 9 cut(s) 119, 278, 359, 745, 898, 1099, 1117, 1430, 1685
Hpy8I GTNNAC 2 cut(s) 979, 1739
Hpy99I CGWCG 1 cut(s) 1282
HpyAV CCTTC 8 cut(s) 233, 286, 824, 992, 1015, 1057, 1862, 2049
HpyCH4III ACNGT 2 cut(s) 974, 1879
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 8 cut(s) 175, 348, 837, 920, 992, 1548, 1670, 1676
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 756
Hsp92I GRCGYC 2 cut(s) 305, 700
HspAI GCGC 3 cut(s) 1478, 1636, 1751
Kzo9I GATC 7 cut(s) 580, 829, 848, 879, 1032, 1663, 1700
LmnI GCTCC 5 cut(s) 541, 549, 1124, 1485, 1588
Lsp1109I GCAGC 4 cut(s) 715, 932, 1186, 1258
LweI GCATC 3 cut(s) 1685, 2038, 2050
MaeI CTAG 8 cut(s) 270, 324, 452, 471, 1208, 1221, 1710, 1857
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 1 cut(s) 1896
MalI GATC 7 cut(s) 582, 831, 850, 881, 1034, 1665, 1702
MboI GATC 7 cut(s) 580, 829, 848, 879, 1032, 1663, 1700
MfeI CAATTG 1 cut(s) 804
MflI RGATCY 4 cut(s) 580, 829, 848, 879
MhlI GDGCHC 4 cut(s) 546, 593, 799, 1116
MlyI GAGTC 1 cut(s) 452
MmeI TCCRAC 3 cut(s) 519, 1010, 1238
MroXI GAANNNNTTC 3 cut(s) 114, 401, 1765
MslI CAYNNNNRTG 3 cut(s) 423, 677, 1877
MspCI CTTAAG 1 cut(s) 1391
MspI CCGG 1 cut(s) 2099
MspR9I CCNGG 5 cut(s) 164, 1524, 1894, 1902, 2100
MunI CAATTG 1 cut(s) 804
Mva1269I GAATGC 4 cut(s) 837, 872, 922, 1260
MvaI CCWGG 4 cut(s) 164, 1524, 1894, 1902
MwoI GCNNNNNNNGC 4 cut(s) 414, 1133, 1468, 1477
NciI CCSGG 1 cut(s) 2100
NdeII GATC 7 cut(s) 580, 829, 848, 879, 1032, 1663, 1700
NheI GCTAGC 2 cut(s) 269, 1709
NlaIV GGNNCC 3 cut(s) 61, 129, 796
NspI RCATGY 4 cut(s) 653, 938, 1004, 1321
OliI CACNNNNGTG 2 cut(s) 423, 1877
PagI TCATGA 3 cut(s) 118, 277, 1098
PciI ACATGT 2 cut(s) 649, 934
PctI GAATGC 4 cut(s) 837, 872, 922, 1260
PdmI GAANNNNTTC 3 cut(s) 114, 401, 1765
PfeI GAWTC 7 cut(s) 203, 338, 355, 739, 1766, 1778, 1910
PkrI GCNGC 4 cut(s) 730, 922, 1201, 1273
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 127
PscI ACATGT 2 cut(s) 649, 934
PsiI TTATAA 2 cut(s) 320, 1625
Psp124BI GAGCTC 2 cut(s) 546, 1116
Psp5II RGGWCCY 1 cut(s) 127
Psp6I CCWGG 4 cut(s) 162, 1522, 1892, 1900
PspEI GGTNACC 1 cut(s) 1896
PspGI CCWGG 4 cut(s) 162, 1522, 1892, 1900
PspN4I GGNNCC 3 cut(s) 61, 129, 796
PspPI GGNCC 3 cut(s) 127, 1344, 2036
PspPPI RGGWCCY 1 cut(s) 127
PstI CTGCAG 2 cut(s) 177, 1672
PstNI CAGNNNCTG 1 cut(s) 1151
PsuI RGATCY 4 cut(s) 580, 829, 848, 879
RsaI GTAC 5 cut(s) 504, 755, 1285, 1384, 2013
RsaNI GTAC 5 cut(s) 503, 754, 1284, 1383, 2012
RseI CAYNNNNRTG 3 cut(s) 423, 677, 1877
SacI GAGCTC 2 cut(s) 546, 1116
SatI GCNGC 4 cut(s) 729, 921, 1200, 1272
Sau3AI GATC 7 cut(s) 580, 829, 848, 879, 1032, 1663, 1700
Sau96I GGNCC 3 cut(s) 127, 1344, 2036
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 5 cut(s) 164, 1524, 1894, 1902, 2100
SduI GDGCHC 4 cut(s) 546, 593, 799, 1116
SfaNI GCATC 3 cut(s) 1685, 2038, 2050
SfcI CTRYAG 3 cut(s) 75, 173, 1668
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 3 cut(s) 423, 677, 1877
SmlI CTYRAG 4 cut(s) 1109, 1391, 1685, 2154
SmoI CTYRAG 4 cut(s) 1109, 1391, 1685, 2154
SpeI ACTAGT 1 cut(s) 323
SsiI CCGC 2 cut(s) 406, 2063
SspMI CTAG 8 cut(s) 270, 324, 452, 471, 1208, 1221, 1710, 1857
SstI GAGCTC 2 cut(s) 546, 1116
StyD4I CCNGG 5 cut(s) 162, 1522, 1892, 1900, 2098
StyI CCWWGG 2 cut(s) 1557, 1914
TaaI ACNGT 2 cut(s) 974, 1879
TaiI ACGT 1 cut(s) 759
TaqI TCGA 6 cut(s) 29, 108, 358, 1264, 1277, 2001
TatI WGTACW 1 cut(s) 502
TfiI GAWTC 7 cut(s) 203, 338, 355, 739, 1766, 1778, 1910
TscAI CASTG 5 cut(s) 24, 415, 481, 1487, 1789
TseI GCWGC 4 cut(s) 728, 920, 1199, 1271
TspGWI ACGGA 1 cut(s) 1586
TspRI CASTG 5 cut(s) 24, 415, 481, 1487, 1789
Vha464I CTTAAG 1 cut(s) 1391
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 1801
XceI RCATGY 4 cut(s) 653, 938, 1004, 1321
XcmI CCANNNNNNNNNTGG 1 cut(s) 1789
XmiI GTMKAC 2 cut(s) 978, 1738
XmnI GAANNNNTTC 3 cut(s) 114, 401, 1765
XspI CTAG 8 cut(s) 270, 324, 452, 471, 1208, 1221, 1710, 1857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.