B3 DNA binding domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B3 | PF02362 | 134 - 223 | 2.7e-19 | B3 DNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1254 |
| AccI | GTMKAC | 1 cut(s) | 139 |
| AciI | CCGC | 4 cut(s) | 519, 701, 932, 1141 |
| AcsI | RAATTY | 2 cut(s) | 123, 880 |
| AcuI | CTGAAG | 4 cut(s) | 327, 354, 711, 1157 |
| AcyI | GRCGYC | 1 cut(s) | 1144 |
| AfaI | GTAC | 1 cut(s) | 665 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 205, 1254, 1345 |
| AgsI | TTSAA | 6 cut(s) | 214, 362, 658, 718, 836, 1244 |
| AhlI | ACTAGT | 1 cut(s) | 11 |
| AjnI | CCWGG | 2 cut(s) | 265, 1338 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 246, 278 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1320, 1352 |
| AluBI | AGCT | 6 cut(s) | 187, 689, 746, 986, 1034, 1214 |
| AluI | AGCT | 6 cut(s) | 187, 689, 746, 986, 1034, 1214 |
| Alw21I | GWGCWC | 1 cut(s) | 45 |
| Alw26I | GTCTC | 3 cut(s) | 2, 188, 893 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1177 |
| AoxI | GGCC | 1 cut(s) | 644 |
| ApeKI | GCWGC | 3 cut(s) | 415, 927, 986 |
| ApoI | RAATTY | 2 cut(s) | 123, 880 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 53, 85 |
| AseI | ATTAAT | 1 cut(s) | 972 |
| AspS9I | GGNCC | 2 cut(s) | 61, 1164 |
| AsuC2I | CCSGG | 1 cut(s) | 1132 |
| AsuHPI | GGTGA | 5 cut(s) | 143, 281, 629, 839, 1243 |
| AvaII | GGWCC | 2 cut(s) | 61, 1164 |
| AxyI | CCTNAGG | 1 cut(s) | 285 |
| BaeGI | GKGCMC | 1 cut(s) | 1132 |
| BauI | CACGAG | 2 cut(s) | 860, 1215 |
| BbsI | GAAGAC | 3 cut(s) | 105, 815, 1085 |
| Bbv12I | GWGCWC | 1 cut(s) | 45 |
| BbvI | GCAGC | 3 cut(s) | 427, 914, 973 |
| BccI | CCATC | 7 cut(s) | 175, 282, 404, 427, 490, 573, 1267 |
| BciT130I | CCWGG | 2 cut(s) | 267, 1340 |
| BcnI | CCSGG | 1 cut(s) | 1132 |
| BcoDI | GTCTC | 3 cut(s) | 2, 188, 893 |
| BcuI | ACTAGT | 1 cut(s) | 11 |
| BfaI | CTAG | 1 cut(s) | 12 |
| BisI | GCNGC | 5 cut(s) | 416, 702, 928, 987, 1142 |
| BlsI | GCNGC | 5 cut(s) | 417, 703, 929, 988, 1143 |
| Bme1390I | CCNGG | 3 cut(s) | 267, 1132, 1340 |
| Bme18I | GGWCC | 2 cut(s) | 61, 1164 |
| BmgT120I | GGNCC | 2 cut(s) | 61, 1164 |
| BmiI | GGNNCC | 1 cut(s) | 727 |
| BmrFI | CCNGG | 3 cut(s) | 267, 1132, 1340 |
| BmsI | GCATC | 3 cut(s) | 481, 1078, 1276 |
| BpiI | GAAGAC | 3 cut(s) | 105, 815, 1085 |
| Bpu10I | CCTNAGC | 1 cut(s) | 456 |
| BpuEI | CTTGAG | 1 cut(s) | 1226 |
| BpuMI | CCSGG | 1 cut(s) | 1132 |
| BsaAI | YACGTR | 1 cut(s) | 1127 |
| BsaHI | GRCGYC | 1 cut(s) | 1144 |
| BsaI | GGTCTC | 1 cut(s) | 188 |
| BsaJI | CCNNGG | 3 cut(s) | 843, 1054, 1358 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 205, 1254, 1345 |
| Bse1I | ACTGG | 2 cut(s) | 38, 432 |
| Bse21I | CCTNAGG | 1 cut(s) | 285 |
| Bse3DI | GCAATG | 1 cut(s) | 449 |
| BseBI | CCWGG | 2 cut(s) | 267, 1340 |
| BseDI | CCNNGG | 3 cut(s) | 843, 1054, 1358 |
| BseGI | GGATG | 3 cut(s) | 482, 584, 1278 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 205, 1254, 1345 |
| BseMI | GCAATG | 1 cut(s) | 449 |
| BseMII | CTCAG | 3 cut(s) | 299, 560, 1139 |
| BseNI | ACTGG | 2 cut(s) | 38, 432 |
| BseSI | GKGCMC | 1 cut(s) | 1132 |
| BseXI | GCAGC | 3 cut(s) | 427, 914, 973 |
| BsgI | GTGCAG | 2 cut(s) | 715, 932 |
| BshFI | GGCC | 1 cut(s) | 646 |
| BsiHKAI | GWGCWC | 1 cut(s) | 45 |
| BsiSI | CCGG | 1 cut(s) | 1132 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 205, 1254, 1345 |
| BsmAI | GTCTC | 3 cut(s) | 2, 188, 893 |
| BsnI | GGCC | 1 cut(s) | 646 |
| Bso31I | GGTCTC | 1 cut(s) | 188 |
| Bsp1286I | GDGCHC | 2 cut(s) | 45, 1132 |
| Bsp1407I | TGTACA | 1 cut(s) | 663 |
| Bsp143I | GATC | 3 cut(s) | 366, 900, 919 |
| Bsp19I | CCATGG | 2 cut(s) | 1054, 1358 |
| BspACI | CCGC | 4 cut(s) | 519, 701, 932, 1141 |
| BspANI | GGCC | 1 cut(s) | 646 |
| BspCNI | CTCAG | 3 cut(s) | 298, 561, 1140 |
| BspLI | GGNNCC | 1 cut(s) | 727 |
| BspTNI | GGTCTC | 1 cut(s) | 188 |
| BsrDI | GCAATG | 1 cut(s) | 449 |
| BsrGI | TGTACA | 1 cut(s) | 663 |
| BsrI | ACTGG | 2 cut(s) | 38, 432 |
| BssECI | CCNNGG | 3 cut(s) | 843, 1054, 1358 |
| BssMI | GATC | 3 cut(s) | 366, 900, 919 |
| BssNI | GRCGYC | 1 cut(s) | 1144 |
| BssSI | CACGAG | 2 cut(s) | 860, 1215 |
| BssT1I | CCWWGG | 3 cut(s) | 843, 1054, 1358 |
| Bst2BI | CACGAG | 2 cut(s) | 860, 1215 |
| Bst2UI | CCWGG | 2 cut(s) | 267, 1340 |
| Bst6I | CTCTTC | 5 cut(s) | 296, 357, 777, 891, 1338 |
| BstACI | GRCGYC | 1 cut(s) | 1144 |
| BstAUI | TGTACA | 1 cut(s) | 663 |
| BstBAI | YACGTR | 1 cut(s) | 1127 |
| BstC8I | GCNNGC | 4 cut(s) | 932, 1036, 1040, 1212 |
| BstDEI | CTNAG | 5 cut(s) | 285, 456, 569, 1148, 1290 |
| BstDSI | CCRYGG | 2 cut(s) | 1054, 1358 |
| BstEII | GGTNACC | 1 cut(s) | 269 |
| BstF5I | GGATG | 3 cut(s) | 482, 584, 1278 |
| BstKTI | GATC | 3 cut(s) | 369, 903, 922 |
| BstMAI | GTCTC | 3 cut(s) | 2, 188, 893 |
| BstMBI | GATC | 3 cut(s) | 366, 900, 919 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 184, 1031, 1141 |
| BstNI | CCWGG | 2 cut(s) | 267, 1340 |
| BstPI | GGTNACC | 1 cut(s) | 269 |
| BstSCI | CCNGG | 3 cut(s) | 265, 1130, 1338 |
| BstSLI | GKGCMC | 1 cut(s) | 1132 |
| BstV1I | GCAGC | 3 cut(s) | 427, 914, 973 |
| BstV2I | GAAGAC | 3 cut(s) | 105, 815, 1085 |
| Bsu36I | CCTNAGG | 1 cut(s) | 285 |
| BsuRI | GGCC | 1 cut(s) | 646 |
| BtgI | CCRYGG | 2 cut(s) | 1054, 1358 |
| BtgZI | GCGATG | 1 cut(s) | 1000 |
| BtsCI | GGATG | 3 cut(s) | 482, 584, 1278 |
| BtsIMutI | CAGTG | 2 cut(s) | 45, 439 |
| Cac8I | GCNNGC | 4 cut(s) | 932, 1036, 1040, 1212 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1177 |
| Cfr13I | GGNCC | 2 cut(s) | 61, 1164 |
| CseI | GACGC | 1 cut(s) | 1133 |
| Csp6I | GTAC | 1 cut(s) | 664 |
| CviAII | CATG | 6 cut(s) | 49, 245, 310, 488, 1055, 1359 |
| CviQI | GTAC | 1 cut(s) | 664 |
| DdeI | CTNAG | 5 cut(s) | 285, 456, 569, 1148, 1290 |
| DpnI | GATC | 3 cut(s) | 368, 902, 921 |
| DpnII | GATC | 3 cut(s) | 366, 900, 919 |
| DraI | TTTAAA | 1 cut(s) | 651 |
| Eam1104I | CTCTTC | 5 cut(s) | 296, 357, 777, 891, 1338 |
| EarI | CTCTTC | 5 cut(s) | 296, 357, 777, 891, 1338 |
| Eco130I | CCWWGG | 3 cut(s) | 843, 1054, 1358 |
| Eco147I | AGGCCT | 1 cut(s) | 646 |
| Eco31I | GGTCTC | 1 cut(s) | 188 |
| Eco47I | GGWCC | 2 cut(s) | 61, 1164 |
| Eco57I | CTGAAG | 4 cut(s) | 327, 354, 711, 1157 |
| Eco81I | CCTNAGG | 1 cut(s) | 285 |
| Eco91I | GGTNACC | 1 cut(s) | 269 |
| EcoO65I | GGTNACC | 1 cut(s) | 269 |
| EcoRII | CCWGG | 2 cut(s) | 265, 1338 |
| EcoT14I | CCWWGG | 3 cut(s) | 843, 1054, 1358 |
| ErhI | CCWWGG | 3 cut(s) | 843, 1054, 1358 |
| FaeI | CATG | 6 cut(s) | 52, 248, 313, 491, 1058, 1362 |
| FatI | CATG | 6 cut(s) | 48, 244, 309, 487, 1054, 1358 |
| FauI | CCCGC | 2 cut(s) | 512, 939 |
| FblI | GTMKAC | 1 cut(s) | 139 |
| Fnu4HI | GCNGC | 5 cut(s) | 416, 702, 928, 987, 1142 |
| FokI | GGATG | 3 cut(s) | 469, 591, 1285 |
| Fsp4HI | GCNGC | 5 cut(s) | 416, 702, 928, 987, 1142 |
| FspBI | CTAG | 1 cut(s) | 12 |
| GluI | GCNGC | 5 cut(s) | 416, 702, 928, 987, 1142 |
| HaeIII | GGCC | 1 cut(s) | 646 |
| HapII | CCGG | 1 cut(s) | 1132 |
| HgaI | GACGC | 1 cut(s) | 1133 |
| Hin1I | GRCGYC | 1 cut(s) | 1144 |
| Hin1II | CATG | 6 cut(s) | 52, 248, 313, 491, 1058, 1362 |
| HincII | GTYRAC | 1 cut(s) | 325 |
| HindII | GTYRAC | 1 cut(s) | 325 |
| HinfI | GANTC | 4 cut(s) | 217, 338, 1119, 1244 |
| HpaII | CCGG | 1 cut(s) | 1132 |
| HphI | GGTGA | 5 cut(s) | 143, 281, 629, 839, 1243 |
| Hpy166II | GTNNAC | 5 cut(s) | 140, 296, 325, 664, 1328 |
| Hpy188I | TCNGA | 7 cut(s) | 25, 222, 279, 895, 905, 1149, 1179 |
| Hpy188III | TCNNGA | 7 cut(s) | 214, 316, 332, 715, 862, 1162, 1241 |
| Hpy8I | GTNNAC | 5 cut(s) | 140, 296, 325, 664, 1328 |
| Hpy99I | CGWCG | 1 cut(s) | 107 |
| HpyAV | CCTTC | 3 cut(s) | 165, 400, 579 |
| HpyCH4IV | ACGT | 2 cut(s) | 760, 1126 |
| HpyCH4V | TGCA | 8 cut(s) | 415, 494, 550, 732, 949, 1038, 1220, 1316 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 184, 1031, 1141 |
| HpyF3I | CTNAG | 5 cut(s) | 285, 456, 569, 1148, 1290 |
| HpySE526I | ACGT | 2 cut(s) | 760, 1126 |
| Hsp92I | GRCGYC | 1 cut(s) | 1144 |
| Hsp92II | CATG | 6 cut(s) | 52, 248, 313, 491, 1058, 1362 |
| Kzo9I | GATC | 3 cut(s) | 366, 900, 919 |
| LmnI | GCTCC | 1 cut(s) | 1360 |
| Lsp1109I | GCAGC | 3 cut(s) | 427, 914, 973 |
| LweI | GCATC | 3 cut(s) | 481, 1078, 1276 |
| MaeI | CTAG | 1 cut(s) | 12 |
| MaeII | ACGT | 2 cut(s) | 760, 1126 |
| MaeIII | GTNAC | 1 cut(s) | 269 |
| MalI | GATC | 3 cut(s) | 368, 902, 921 |
| MboI | GATC | 3 cut(s) | 366, 900, 919 |
| MhlI | GDGCHC | 2 cut(s) | 45, 1132 |
| MluCI | AATT | 5 cut(s) | 123, 146, 461, 501, 880 |
| MlyI | GAGTC | 1 cut(s) | 211 |
| MmeI | TCCRAC | 2 cut(s) | 263, 1096 |
| MseI | TTAA | 3 cut(s) | 650, 972, 1011 |
| MslI | CAYNNNNRTG | 5 cut(s) | 53, 401, 801, 860, 1363 |
| MspI | CCGG | 1 cut(s) | 1132 |
| MspR9I | CCNGG | 3 cut(s) | 267, 1132, 1340 |
| MvaI | CCWGG | 2 cut(s) | 267, 1340 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 184, 1031, 1141 |
| NciI | CCSGG | 1 cut(s) | 1132 |
| NcoI | CCATGG | 2 cut(s) | 1054, 1358 |
| NdeII | GATC | 3 cut(s) | 366, 900, 919 |
| NlaIII | CATG | 6 cut(s) | 52, 248, 313, 491, 1058, 1362 |
| NlaIV | GGNNCC | 1 cut(s) | 727 |
| NmuCI | GTSAC | 1 cut(s) | 269 |
| PceI | AGGCCT | 1 cut(s) | 646 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 99 |
| PfeI | GAWTC | 3 cut(s) | 338, 1119, 1244 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1254 |
| PfoI | TCCNGGA | 1 cut(s) | 1338 |
| PkrI | GCNGC | 5 cut(s) | 417, 703, 929, 988, 1143 |
| PleI | GAGTC | 1 cut(s) | 211 |
| PpsI | GAGTC | 1 cut(s) | 211 |
| Ppu21I | YACGTR | 1 cut(s) | 1127 |
| PshBI | ATTAAT | 1 cut(s) | 972 |
| Psp6I | CCWGG | 2 cut(s) | 265, 1338 |
| PspEI | GGTNACC | 1 cut(s) | 269 |
| PspGI | CCWGG | 2 cut(s) | 265, 1338 |
| PspN4I | GGNNCC | 1 cut(s) | 727 |
| PspPI | GGNCC | 2 cut(s) | 61, 1164 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1177 |
| RsaI | GTAC | 1 cut(s) | 665 |
| RsaNI | GTAC | 1 cut(s) | 664 |
| RseI | CAYNNNNRTG | 5 cut(s) | 53, 401, 801, 860, 1363 |
| SaqAI | TTAA | 3 cut(s) | 650, 972, 1011 |
| SatI | GCNGC | 5 cut(s) | 416, 702, 928, 987, 1142 |
| Sau3AI | GATC | 3 cut(s) | 366, 900, 919 |
| Sau96I | GGNCC | 2 cut(s) | 61, 1164 |
| SchI | GAGTC | 1 cut(s) | 211 |
| ScrFI | CCNGG | 3 cut(s) | 267, 1132, 1340 |
| SduI | GDGCHC | 2 cut(s) | 45, 1132 |
| SfaNI | GCATC | 3 cut(s) | 481, 1078, 1276 |
| SinI | GGWCC | 2 cut(s) | 61, 1164 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 53, 401, 801, 860, 1363 |
| SmlI | CTYRAG | 1 cut(s) | 1205 |
| SmoI | CTYRAG | 1 cut(s) | 1205 |
| SpeI | ACTAGT | 1 cut(s) | 11 |
| Sse9I | AATT | 5 cut(s) | 123, 146, 461, 501, 880 |
| SseBI | AGGCCT | 1 cut(s) | 646 |
| SsiI | CCGC | 4 cut(s) | 519, 701, 932, 1141 |
| SspMI | CTAG | 1 cut(s) | 12 |
| StuI | AGGCCT | 1 cut(s) | 646 |
| StyD4I | CCNGG | 3 cut(s) | 265, 1130, 1338 |
| StyI | CCWWGG | 3 cut(s) | 843, 1054, 1358 |
| TaiI | ACGT | 2 cut(s) | 763, 1129 |
| TaqI | TCGA | 3 cut(s) | 72, 315, 963 |
| TasI | AATT | 5 cut(s) | 123, 146, 461, 501, 880 |
| TatI | WGTACW | 1 cut(s) | 663 |
| TauI | GCSGC | 2 cut(s) | 704, 1144 |
| TfiI | GAWTC | 3 cut(s) | 338, 1119, 1244 |
| Tru1I | TTAA | 3 cut(s) | 650, 972, 1011 |
| Tru9I | TTAA | 3 cut(s) | 650, 972, 1011 |
| TscAI | CASTG | 2 cut(s) | 45, 439 |
| TseFI | GTSAC | 1 cut(s) | 269 |
| TseI | GCWGC | 3 cut(s) | 415, 927, 986 |
| Tsp45I | GTSAC | 1 cut(s) | 269 |
| TspDTI | ATGAA | 5 cut(s) | 65, 147, 528, 785, 1124 |
| TspGWI | ACGGA | 2 cut(s) | 125, 313 |
| TspRI | CASTG | 2 cut(s) | 45, 439 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1254 |
| VpaK11BI | GGWCC | 2 cut(s) | 61, 1164 |
| VspI | ATTAAT | 1 cut(s) | 972 |
| XapI | RAATTY | 2 cut(s) | 123, 880 |
| XmiI | GTMKAC | 1 cut(s) | 139 |
| XspI | CTAG | 1 cut(s) | 12 |