Rh6CG084200

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000561
Physical Location & Seq
Reverse (-)
9217768 .. 9220648
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG084200.1

Sequence Viewer

Length: 888 bp
ATGCTCCAACACAAAATGAATGACAGGGAGGAGGAAATGTCCGAGGATTTCCGAGAAGAAAAACAGGAGGAGGAGAAGGACAGGATGGACATTTCCCCGCTCTCTGTCACCAGACAACAATTTGACAATTTGACCCTCCATTCAACATTCTCGGTACAGCAGAGGAAGCGCTCTAAGATCCGGACAAGTCGATTTAGTCCAACCCAAATTGTCAAATTCCACAATTTGACCCTTGATTCTCCAAACTCGGAACAGAGGCAGCCATTGGCGGAAGCTAACAAATATGGGTTCAAAACTCCCAAAGGGAAAAGACATTTGAGTCCAGGCCTTAACACCAAGCGAGAAGTTTCTAGTGATCCTCAGAGGCATGGAGGCTGCAAACGGAGTCGAACCAACCCGTCCATGTCCTGGCATTTTGGCCATCCTGAAGAGTCTTCTGTCAAAAGCCAAGTTAGAGAAATCCCAGAGAATCTAGAAGCCGAATGTCCCTTCTTTATGAAGTCCATGATACGATCAAATATTTCCGTTTGCTTTATGTTGACACTGCCTAGGAGATTCTGCAACTTGCATTTACCGTTGCATGGTACAGCAACGATAACATTGGAAGATAAAGAGGGGAAAGAATATGAAACAAAATTTCTTGCAGACAAAAGAACGCTGAGTGGGGGATGGAAAGGATTTTGTCAGGCAAAGGACTTGCGCCTTGATGATGTTCTAGTTTTCCAGTTGGTTAGCCCTTTGAAGTTCAAGGTGTACAGATTGAGACCAGAATATGATCCAAGTGAAGATGATGTAGATGCAGCTTTTGTCCTCTTGAAAATGAGTGCCTCTGAACAAACACTGTCTGAGGAAAACCCTCCTATGCAGAGGAAAACCCTGCAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

295

Amino Acids

34.28

Weight (kDa)

8.7

Isoelectric Point (pI)

69.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 165 - 250 1.4e-15 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 318
AccB7I CCANNNNNTGG 1 cut(s) 408
AccBSI CCGCTC 1 cut(s) 100
AccIII TCCGGA 1 cut(s) 180
AciI CCGC 2 cut(s) 98, 269
AclWI GGATC 3 cut(s) 172, 350, 770
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 2 cut(s) 215, 635
AcuI CTGAAG 1 cut(s) 447
AfaI GTAC 3 cut(s) 156, 586, 755
AfeI AGCGCT 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 408, 581
AgsI TTSAA 5 cut(s) 144, 292, 742, 748, 817
AjnI CCWGG 2 cut(s) 322, 407
AluBI AGCT 2 cut(s) 275, 803
AluI AGCT 2 cut(s) 275, 803
Alw26I GTCTC 1 cut(s) 757
AlwI GGATC 3 cut(s) 172, 350, 770
Aor13HI TCCGGA 1 cut(s) 180
Aor51HI AGCGCT 1 cut(s) 170
AoxI GGCC 2 cut(s) 325, 418
ApeKI GCWGC 3 cut(s) 259, 375, 800
ApoI RAATTY 2 cut(s) 215, 635
AspA2I CCTAGG 1 cut(s) 548
AspLEI GCGC 2 cut(s) 171, 702
AsuHPI GGTGA 1 cut(s) 100
AvrII CCTAGG 1 cut(s) 548
BalI TGGCCA 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 426
BbvI GCAGC 3 cut(s) 271, 362, 812
BccI CCATC 3 cut(s) 79, 429, 663
BciT130I CCWGG 2 cut(s) 324, 409
BcoDI GTCTC 1 cut(s) 757
BfaI CTAG 4 cut(s) 351, 473, 549, 716
BfoI RGCGCY 1 cut(s) 172
BisI GCNGC 3 cut(s) 260, 376, 801
BlnI CCTAGG 1 cut(s) 548
BlsI GCNGC 3 cut(s) 261, 377, 802
Bme1390I CCNGG 2 cut(s) 324, 409
BmrFI CCNGG 2 cut(s) 324, 409
BmsI GCATC 1 cut(s) 787
BpiI GAAGAC 1 cut(s) 426
BsaI GGTCTC 1 cut(s) 757
BsaJI CCNNGG 2 cut(s) 42, 548
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 2 cut(s) 408, 581
Bse1I ACTGG 1 cut(s) 724
BseAI TCCGGA 1 cut(s) 180
BseBI CCWGG 2 cut(s) 324, 409
BseDI CCNNGG 2 cut(s) 42, 548
BseGI GGATG 3 cut(s) 90, 421, 674
BseLI CCNNNNNNNGG 2 cut(s) 408, 581
BseMII CTCAG 3 cut(s) 374, 650, 837
BseNI ACTGG 1 cut(s) 724
BseRI GAGGAG 3 cut(s) 44, 83, 86
BseXI GCAGC 3 cut(s) 271, 362, 812
BshFI GGCC 2 cut(s) 327, 420
BsiSI CCGG 1 cut(s) 181
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 2 cut(s) 408, 581
BsmAI GTCTC 1 cut(s) 757
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 2 cut(s) 327, 420
Bso31I GGTCTC 1 cut(s) 757
Bsp13I TCCGGA 1 cut(s) 180
Bsp1407I TGTACA 1 cut(s) 753
Bsp143I GATC 4 cut(s) 177, 355, 512, 775
BspACI CCGC 2 cut(s) 98, 269
BspANI GGCC 2 cut(s) 327, 420
BspCNI CTCAG 3 cut(s) 373, 651, 838
BspEI TCCGGA 1 cut(s) 180
BspPI GGATC 3 cut(s) 172, 350, 770
BspTNI GGTCTC 1 cut(s) 757
BsrBI CCGCTC 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 753
BsrI ACTGG 1 cut(s) 724
BssECI CCNNGG 2 cut(s) 42, 548
BssMI GATC 4 cut(s) 177, 355, 512, 775
BssT1I CCWWGG 1 cut(s) 548
Bst2UI CCWGG 2 cut(s) 324, 409
Bst4CI ACNGT 2 cut(s) 576, 843
Bst6I CTCTTC 1 cut(s) 423
BstAUI TGTACA 1 cut(s) 753
BstDEI CTNAG 4 cut(s) 174, 360, 659, 846
BstF5I GGATG 3 cut(s) 90, 421, 674
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 2 cut(s) 171, 702
BstKTI GATC 4 cut(s) 180, 358, 515, 778
BstMAI GTCTC 1 cut(s) 757
BstMBI GATC 4 cut(s) 177, 355, 512, 775
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 2 cut(s) 324, 409
BstSCI CCNGG 2 cut(s) 322, 407
BstV1I GCAGC 3 cut(s) 271, 362, 812
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BsuRI GGCC 2 cut(s) 327, 420
BtsCI GGATG 3 cut(s) 90, 421, 674
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 2 cut(s) 542, 839
CfoI GCGC 2 cut(s) 171, 702
Csp6I GTAC 3 cut(s) 155, 585, 754
CviAII CATG 4 cut(s) 368, 403, 505, 581
CviJI RGCY 9 cut(s) 262, 275, 327, 375, 420, 447, 479, 735, 803
CviKI_1 RGCY 9 cut(s) 262, 275, 327, 375, 420, 447, 479, 735, 803
CviQI GTAC 3 cut(s) 155, 585, 754
DdeI CTNAG 4 cut(s) 174, 360, 659, 846
DpnI GATC 4 cut(s) 179, 357, 514, 777
DpnII GATC 4 cut(s) 177, 355, 512, 775
DrdI GACNNNNNNGTC 1 cut(s) 318
DseDI GACNNNNNNGTC 1 cut(s) 318
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
EciI GGCGGA 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 548
Eco147I AGGCCT 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 757
Eco47III AGCGCT 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 447
EcoRII CCWGG 2 cut(s) 322, 407
EcoT14I CCWWGG 1 cut(s) 548
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 4 cut(s) 371, 406, 508, 584
FaqI GGGAC 1 cut(s) 471
FatI CATG 4 cut(s) 367, 402, 504, 580
FauI CCCGC 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 260, 376, 801
FokI GGATG 3 cut(s) 97, 408, 681
Fsp4HI GCNGC 3 cut(s) 260, 376, 801
FspBI CTAG 4 cut(s) 351, 473, 549, 716
GlaI GCGC 2 cut(s) 170, 701
GluI GCNGC 3 cut(s) 260, 376, 801
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 2 cut(s) 327, 420
HapII CCGG 1 cut(s) 181
HhaI GCGC 2 cut(s) 171, 702
Hin1II CATG 4 cut(s) 371, 406, 508, 584
Hin6I GCGC 2 cut(s) 169, 700
HinP1I GCGC 2 cut(s) 169, 700
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HinfI GANTC 6 cut(s) 236, 319, 385, 431, 469, 555
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 540, 754
Hpy188I TCNGA 6 cut(s) 43, 53, 250, 363, 832, 847
Hpy188III TCNNGA 4 cut(s) 181, 425, 473, 814
Hpy8I GTNNAC 2 cut(s) 540, 754
HpyAV CCTTC 2 cut(s) 70, 499
HpyCH4III ACNGT 2 cut(s) 576, 843
HpyCH4V TGCA 8 cut(s) 378, 561, 568, 580, 644, 800, 865, 880
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 4 cut(s) 174, 360, 659, 846
Hsp92II CATG 4 cut(s) 371, 406, 508, 584
HspAI GCGC 2 cut(s) 169, 700
Kpn2I TCCGGA 1 cut(s) 180
Kzo9I GATC 4 cut(s) 177, 355, 512, 775
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 3 cut(s) 271, 362, 812
LweI GCATC 1 cut(s) 787
MaeI CTAG 4 cut(s) 351, 473, 549, 716
MaeIII GTNAC 1 cut(s) 106
MalI GATC 4 cut(s) 179, 357, 514, 777
MbiI CCGCTC 1 cut(s) 100
MboI GATC 4 cut(s) 177, 355, 512, 775
MboII GAAGA 5 cut(s) 68, 426, 440, 617, 797
MflI RGATCY 1 cut(s) 177
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 6 cut(s) 119, 127, 207, 215, 223, 635
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 3 cut(s) 328, 394, 440
MmeI TCCRAC 2 cut(s) 31, 224
Mox20I TGGCCA 1 cut(s) 420
MroI TCCGGA 1 cut(s) 180
MscI TGGCCA 1 cut(s) 420
MseI TTAA 1 cut(s) 330
Msp20I TGGCCA 1 cut(s) 420
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 2 cut(s) 324, 409
MvaI CCWGG 2 cut(s) 324, 409
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 4 cut(s) 177, 355, 512, 775
NlaIII CATG 4 cut(s) 371, 406, 508, 584
NmuCI GTSAC 1 cut(s) 106
PceI AGGCCT 1 cut(s) 327
PfeI GAWTC 3 cut(s) 236, 469, 555
PflMI CCANNNNNTGG 1 cut(s) 408
PkrI GCNGC 3 cut(s) 261, 377, 802
PleI GAGTC 3 cut(s) 327, 393, 439
PpsI GAGTC 3 cut(s) 327, 393, 439
Psp6I CCWGG 2 cut(s) 322, 407
PspGI CCWGG 2 cut(s) 322, 407
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 3 cut(s) 156, 586, 755
RsaNI GTAC 3 cut(s) 155, 585, 754
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 3 cut(s) 260, 376, 801
Sau3AI GATC 4 cut(s) 177, 355, 512, 775
SchI GAGTC 3 cut(s) 328, 394, 440
ScrFI CCNGG 2 cut(s) 324, 409
SetI ASST 4 cut(s) 277, 753, 805, 887
SfaNI GCATC 1 cut(s) 787
Sse9I AATT 6 cut(s) 119, 127, 207, 215, 223, 635
SseBI AGGCCT 1 cut(s) 327
SsiI CCGC 2 cut(s) 98, 269
SspI AATATT 1 cut(s) 520
SspMI CTAG 4 cut(s) 351, 473, 549, 716
StuI AGGCCT 1 cut(s) 327
StyD4I CCNGG 2 cut(s) 322, 407
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 2 cut(s) 576, 843
TaqI TCGA 2 cut(s) 190, 388
TasI AATT 6 cut(s) 119, 127, 207, 215, 223, 635
TatI WGTACW 1 cut(s) 753
TfiI GAWTC 3 cut(s) 236, 469, 555
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 2 cut(s) 549, 846
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 3 cut(s) 259, 375, 800
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 32, 512, 642
TspGWI ACGGA 2 cut(s) 397, 514
TspRI CASTG 2 cut(s) 549, 846
Van91I CCANNNNNTGG 1 cut(s) 408
XapI RAATTY 2 cut(s) 215, 635
XbaI TCTAGA 1 cut(s) 472
XmaJI CCTAGG 1 cut(s) 548
XspI CTAG 4 cut(s) 351, 473, 549, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.