Rorug05G0578900

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000561
Physical Location & Seq
Reverse (-)
77458512 .. 77459102
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0578900.1

Sequence Viewer

Length: 591 bp
ATGTCAATCCCAAACAACAACCAAAACCATATAGGCTCTGGCAGTCCTACTTCAACCCCTGCTATACCAATCTCAACATATCATTCACAGAATTATAACCCTAGGTCTTCAGCACCTAGTGATTATTCTAACCCAGCAGCTCTCGGCATCAACTACTACCTGCCAAATATCACTACATTTCGGCTACCAAGCCGTGTGATAGTGTATGAATTTTATAATCATCCTATAGTAGCAGCTGTACCCAGTTTTACAGTAGCAGGCTTTGGTACTGTTAGGCCTAGGGCACCTGTAGCACCCTTCGTGAGTGCTAGGGCCCCGGTCAGTTACGAAGGGTCGAGTATTCTGATACCTAGGGCTACGTCGTCTTCGATTTCTCTGGGAAGAGGTCCAAGGGAGGAATCCCAGTTCCAGGGTATTAATGACCAAGCTAGTTCTTCACGTTTGGTGAGGCGAGTGCATCAGGAAGCTACAGCTAGCGAAAGCACTGAGGGTGAACACAAATGCTGTAAGTGTGGGAAGGCATTTCAAAGCGGCCCGGCTTTGGGTGGTCACATGAGTTCTCACTCGAAGAGAAGGAGGACTAGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

196

Amino Acids

21.16

Weight (kDa)

10.07

Isoelectric Point (pI)

68.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 166 - 190 8.9e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 96, 216
Acc36I ACCTGC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 283
AciI CCGC 1 cut(s) 531
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 93
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 2 cut(s) 240, 268
AfiI CCNNNNNNNGG 3 cut(s) 409, 541, 542
AgsI TTSAA 2 cut(s) 54, 527
AjnI CCWGG 1 cut(s) 408
AloI GAACNNNNNNTCC 2 cut(s) 389, 421
AluBI AGCT 5 cut(s) 140, 236, 428, 467, 473
AluI AGCT 5 cut(s) 140, 236, 428, 467, 473
AoxI GGCC 3 cut(s) 275, 312, 532
ApaI GGGCCC 1 cut(s) 316
ApeKI GCWGC 2 cut(s) 137, 233
ApoI RAATTY 1 cut(s) 209
AseI ATTAAT 1 cut(s) 417
AspA2I CCTAGG 3 cut(s) 101, 278, 350
AspS9I GGNCC 4 cut(s) 312, 313, 386, 533
AsuC2I CCSGG 2 cut(s) 317, 536
AsuHPI GGTGA 2 cut(s) 457, 503
AsuNHI GCTAGC 1 cut(s) 473
AvaII GGWCC 1 cut(s) 386
AvrII CCTAGG 3 cut(s) 101, 278, 350
BaeGI GKGCMC 2 cut(s) 286, 316
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 316
BbsI GAAGAC 2 cut(s) 99, 357
BbvI GCAGC 2 cut(s) 149, 245
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 410
BcnI CCSGG 2 cut(s) 317, 536
BfaI CTAG 8 cut(s) 102, 117, 279, 309, 351, 429, 474, 582
BfmI CTRYAG 3 cut(s) 225, 288, 468
BfuAI ACCTGC 1 cut(s) 168
BisI GCNGC 3 cut(s) 138, 234, 532
BlnI CCTAGG 3 cut(s) 101, 278, 350
BlsI GCNGC 3 cut(s) 139, 235, 533
Bme1390I CCNGG 3 cut(s) 317, 410, 536
Bme18I GGWCC 1 cut(s) 386
BmgT120I GGNCC 4 cut(s) 312, 313, 386, 533
BmiI GGNNCC 3 cut(s) 285, 314, 315
BmrFI CCNGG 3 cut(s) 317, 410, 536
BmrI ACTGGG 2 cut(s) 237, 397
BmsI GCATC 2 cut(s) 156, 466
BmtI GCTAGC 1 cut(s) 477
BmuI ACTGGG 2 cut(s) 237, 397
BpiI GAAGAC 2 cut(s) 99, 357
BpuMI CCSGG 2 cut(s) 317, 536
BsaJI CCNNGG 6 cut(s) 101, 278, 315, 350, 389, 409
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 541, 542
Bse1I ACTGG 2 cut(s) 243, 403
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 6 cut(s) 101, 278, 315, 350, 389, 409
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 3 cut(s) 409, 541, 542
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 2 cut(s) 243, 403
BseSI GKGCMC 2 cut(s) 286, 316
BseXI GCAGC 2 cut(s) 149, 245
BseYI CCCAGC 1 cut(s) 133
BshFI GGCC 3 cut(s) 277, 314, 534
BshNI GGYRCC 1 cut(s) 283
BsiSI CCGG 2 cut(s) 317, 536
BslI CCNNNNNNNGG 3 cut(s) 409, 541, 542
BsnI GGCC 3 cut(s) 277, 314, 534
Bsp120I GGGCCC 1 cut(s) 312
Bsp1286I GDGCHC 2 cut(s) 286, 316
BspACI CCGC 1 cut(s) 531
BspANI GGCC 3 cut(s) 277, 314, 534
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 3 cut(s) 285, 314, 315
BspMI ACCTGC 1 cut(s) 168
BspOI GCTAGC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 283
BsrI ACTGG 2 cut(s) 243, 403
BssECI CCNNGG 6 cut(s) 101, 278, 315, 350, 389, 409
BssT1I CCWWGG 4 cut(s) 101, 278, 350, 389
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 2 cut(s) 253, 271
Bst6I CTCTTC 2 cut(s) 376, 563
BstC8I GCNNGC 2 cut(s) 259, 475
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 3 cut(s) 315, 408, 534
BstSFI CTRYAG 3 cut(s) 225, 288, 468
BstSLI GKGCMC 2 cut(s) 286, 316
BstV1I GCAGC 2 cut(s) 149, 245
BstV2I GAAGAC 2 cut(s) 99, 357
BsuRI GGCC 3 cut(s) 277, 314, 534
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 483
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 259, 475
Cfr13I GGNCC 4 cut(s) 312, 313, 386, 533
Csp6I GTAC 2 cut(s) 239, 267
CviAII CATG 1 cut(s) 553
CviQI GTAC 2 cut(s) 239, 267
DdeI CTNAG 1 cut(s) 486
DraIII CACNNNGTG 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 376, 563
EarI CTCTTC 2 cut(s) 376, 563
Eco130I CCWWGG 4 cut(s) 101, 278, 350, 389
Eco147I AGGCCT 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 93
EcoO109I RGGNCCY 2 cut(s) 312, 313
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 4 cut(s) 101, 278, 350, 389
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 4 cut(s) 101, 278, 350, 389
FaeI CATG 1 cut(s) 556
FaiI YATR 9 cut(s) 30, 32, 65, 79, 96, 207, 216, 227, 554
FatI CATG 1 cut(s) 552
Fnu4HI GCNGC 3 cut(s) 138, 234, 532
FokI GGATG 1 cut(s) 207
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 3 cut(s) 138, 234, 532
FspBI CTAG 8 cut(s) 102, 117, 279, 309, 351, 429, 474, 582
GluI GCNGC 3 cut(s) 138, 234, 532
GsaI CCCAGC 1 cut(s) 137
HaeIII GGCC 3 cut(s) 277, 314, 534
HapII CCGG 2 cut(s) 317, 536
Hin1II CATG 1 cut(s) 556
HinfI GANTC 1 cut(s) 398
HpaII CCGG 2 cut(s) 317, 536
HphI GGTGA 2 cut(s) 457, 503
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 2 cut(s) 301, 461
Hpy8I GTNNAC 1 cut(s) 494
Hpy99I CGWCG 1 cut(s) 364
HpyAV CCTTC 4 cut(s) 307, 323, 511, 567
HpyCH4III ACNGT 2 cut(s) 253, 271
HpyCH4IV ACGT 2 cut(s) 359, 439
HpyCH4V TGCA 1 cut(s) 457
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 1 cut(s) 486
HpySE526I ACGT 2 cut(s) 359, 439
Hsp92II CATG 1 cut(s) 556
Lsp1109I GCAGC 2 cut(s) 149, 245
LweI GCATC 2 cut(s) 156, 466
MaeI CTAG 8 cut(s) 102, 117, 279, 309, 351, 429, 474, 582
MaeII ACGT 2 cut(s) 359, 439
MaeIII GTNAC 2 cut(s) 323, 548
MboII GAAGA 5 cut(s) 99, 357, 393, 426, 580
MhlI GDGCHC 2 cut(s) 286, 316
MluCI AATT 2 cut(s) 91, 209
MnlI CCTC 5 cut(s) 377, 388, 441, 481, 570
MseI TTAA 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 2 cut(s) 317, 536
MspR9I CCNGG 3 cut(s) 317, 410, 536
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 290
NciI CCSGG 2 cut(s) 317, 536
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 1 cut(s) 556
NlaIV GGNNCC 3 cut(s) 285, 314, 315
NmeAIII GCCGAG 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 548
PceI AGGCCT 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 365
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 3 cut(s) 139, 235, 533
PshBI ATTAAT 1 cut(s) 417
PsiI TTATAA 2 cut(s) 96, 216
Psp6I CCWGG 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 285, 314, 315
PspOMI GGGCCC 1 cut(s) 312
PspPI GGNCC 4 cut(s) 312, 313, 386, 533
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 240, 268
RsaNI GTAC 2 cut(s) 239, 267
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 3 cut(s) 138, 234, 532
Sau96I GGNCC 4 cut(s) 312, 313, 386, 533
ScrFI CCNGG 3 cut(s) 317, 410, 536
SduI GDGCHC 2 cut(s) 286, 316
SfaNI GCATC 2 cut(s) 156, 466
SfcI CTRYAG 3 cut(s) 225, 288, 468
SinI GGWCC 1 cut(s) 386
Sse9I AATT 2 cut(s) 91, 209
SseBI AGGCCT 1 cut(s) 277
SsiI CCGC 1 cut(s) 531
SspMI CTAG 8 cut(s) 102, 117, 279, 309, 351, 429, 474, 582
StuI AGGCCT 1 cut(s) 277
StyD4I CCNGG 3 cut(s) 315, 408, 534
StyI CCWWGG 4 cut(s) 101, 278, 350, 389
TaaI ACNGT 2 cut(s) 253, 271
TaiI ACGT 2 cut(s) 362, 442
TaqI TCGA 3 cut(s) 335, 368, 566
TasI AATT 2 cut(s) 91, 209
TauI GCSGC 1 cut(s) 534
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 2 cut(s) 137, 233
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 1 cut(s) 222
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 386
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XmaJI CCTAGG 3 cut(s) 101, 278, 350
XspI CTAG 8 cut(s) 102, 117, 279, 309, 351, 429, 474, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.