Rroxscaffold_7G00205330

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000561
Physical Location & Seq
Reverse (-)
54896359 .. 54898350
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205330.1

Sequence Viewer

Length: 861 bp
ATGAATCTGGAGGAGAATTTCTTCCAGTATTTCCAGGAAGACGAAGGGCACACGACCTTCCCCGAGCTCCCTGTCCCTACTACTTCAACTCCATTTGACGATTTCACCCTTCATCCGGTGGAGCAGCGCAGAGAGACATTGGAGGAGACAACCCAAAATGGGTTCAGGCCTTGGAAGTGGAAAAGTCCATTGAGTCCAATTCCCAAGAGAAAAAATGCTGGGGTTCCTCTGAGGAATGGAGGCTATAAGCGTAAGATCACTAAGTCCAACTATCATGAAAAGTCTTCTGTCAGAAACCAACTGCAACATATCCTGGCAAATCTAGGACCTGAATGTCCCTTCTTTTTGAAGTCTATGATACATTGTAATGTTGTCCATGGCTTTAGTTTGACATTGCCGAAGCAATTCTGCTATTTGTATCTGCCATTCCATGATACAACTATAACCTTGGAAGATGAAAGAGGAGAAGAATATAGAACAATATTTCTTGGGGACAAGAGGAGACTGAGCGGTGGATGGAGAGGGTTTTGTGTTGCAAAGAAATTAGTTCTTGGCGACCTCTTAGTTTTCCATTTGGTCAGTCCTTTGAAGTTTAAGGTGTACAAAGTGGAACCTGATAGTCTAACTGAAGTAGATGCAGCTTTTATCCTCTTGAAATTGAGTCTCTCCACACTATTTGAAGAGTACCATCCAATGCCTCCTCCAAAAGATGCTTGCCAAGACAATATTCAAACGACAAGTCTGACAATAGATGCTATTCTGGAGCGTGTAGATGAAGATCACTCCGTGGATTACAGTGATCATCGTTTTGGCTCCAATCTACTATTTCATCCAGGACTTGTTACTCTTGAAGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

286

Amino Acids

33.02

Weight (kDa)

5.95

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 115 - 198 1.7e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 333
AccBSI CCGCTC 1 cut(s) 510
AciI CCGC 1 cut(s) 510
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 648
AdeI CACNNNGTG 1 cut(s) 787
AfaI GTAC 2 cut(s) 602, 686
AfiI CCNNNNNNNGG 2 cut(s) 115, 159
AgsI TTSAA 7 cut(s) 87, 349, 589, 655, 680, 731, 851
AjnI CCWGG 3 cut(s) 33, 312, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 711, 743
AluBI AGCT 2 cut(s) 67, 641
AluI AGCT 2 cut(s) 67, 641
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 4 cut(s) 128, 140, 496, 668
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 124, 638
ApoI RAATTY 1 cut(s) 16
ArsI GACNNNNNNTTYG 2 cut(s) 724, 756
Asp700I GAANNNNTTC 2 cut(s) 20, 404
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 45, 276
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 136, 650
BccI CCATC 2 cut(s) 510, 696
BciT130I CCWGG 3 cut(s) 35, 314, 834
BclI TGATCA 1 cut(s) 799
BcoDI GTCTC 4 cut(s) 128, 140, 496, 668
BfaI CTAG 1 cut(s) 323
BisI GCNGC 2 cut(s) 125, 639
BlsI GCNGC 2 cut(s) 126, 640
Bme1390I CCNGG 3 cut(s) 35, 314, 834
Bme18I GGWCC 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 3 cut(s) 225, 612, 814
BmrFI CCNGG 3 cut(s) 35, 314, 834
BmsI GCATC 3 cut(s) 625, 700, 742
BpiI GAAGAC 2 cut(s) 45, 276
BpmI CTGGAG 2 cut(s) 29, 782
BsaBI GATNNNNATC 1 cut(s) 777
BsaJI CCNNGG 4 cut(s) 170, 376, 447, 786
BsaWI WCCGGW 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 159
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 392
Bse8I GATNNNNATC 1 cut(s) 777
BseBI CCWGG 3 cut(s) 35, 314, 834
BseDI CCNNGG 4 cut(s) 170, 376, 447, 786
BseGI GGATG 4 cut(s) 112, 521, 688, 829
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 2 cut(s) 115, 159
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 2 cut(s) 221, 497
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 5 cut(s) 26, 158, 477, 514, 690
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 2 cut(s) 136, 650
BseYI CCCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 3 cut(s) 59, 321, 506
BslI CCNNNNNNNGG 2 cut(s) 115, 159
BsmAI GTCTC 4 cut(s) 128, 140, 496, 668
BsmFI GGGAC 3 cut(s) 59, 321, 506
BsnI GGCC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 51, 69
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 3 cut(s) 255, 778, 799
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 1 cut(s) 510
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 2 cut(s) 222, 498
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 3 cut(s) 225, 612, 814
BsrBI CCGCTC 1 cut(s) 510
BsrDI GCAATG 1 cut(s) 392
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 170, 376, 447, 786
BssMI GATC 3 cut(s) 255, 778, 799
BssT1I CCWWGG 3 cut(s) 170, 376, 447
Bst2UI CCWGG 3 cut(s) 35, 314, 834
Bst4CI ACNGT 1 cut(s) 797
Bst6I CTCTTC 1 cut(s) 675
BstAUI TGTACA 1 cut(s) 600
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 4 cut(s) 230, 261, 506, 562
BstDSI CCRYGG 2 cut(s) 376, 786
BstF5I GGATG 4 cut(s) 112, 521, 688, 829
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 3 cut(s) 258, 781, 802
BstMAI GTCTC 4 cut(s) 128, 140, 496, 668
BstMBI GATC 3 cut(s) 255, 778, 799
BstNI CCWGG 3 cut(s) 35, 314, 834
BstSCI CCNGG 3 cut(s) 33, 312, 832
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 136, 650
BstV2I GAAGAC 2 cut(s) 45, 276
BsuRI GGCC 1 cut(s) 169
BtgI CCRYGG 2 cut(s) 376, 786
BtsCI GGATG 4 cut(s) 112, 521, 688, 829
BtsIMutI CAGTG 1 cut(s) 802
Cac8I GCNNGC 1 cut(s) 715
CciI TCATGA 1 cut(s) 274
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 601, 685
CspCI CAANNNNNGTGG 2 cut(s) 658, 693
CviAII CATG 3 cut(s) 275, 377, 431
CviJI RGCY 6 cut(s) 67, 169, 243, 381, 641, 813
CviKI_1 RGCY 6 cut(s) 67, 169, 243, 381, 641, 813
CviQI GTAC 2 cut(s) 601, 685
DdeI CTNAG 4 cut(s) 230, 261, 506, 562
DpnI GATC 3 cut(s) 257, 780, 801
DpnII GATC 3 cut(s) 255, 778, 799
DraIII CACNNNGTG 1 cut(s) 787
DrdI GACNNNNNNGTC 1 cut(s) 333
DseDI GACNNNNNNGTC 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 3 cut(s) 170, 376, 447
Eco147I AGGCCT 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 326
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 648
Eco88I CYCGRG 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 326
EcoRII CCWGG 3 cut(s) 33, 312, 832
EcoT14I CCWWGG 3 cut(s) 170, 376, 447
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 3 cut(s) 170, 376, 447
FaeI CATG 3 cut(s) 278, 380, 434
FaiI YATR 8 cut(s) 246, 276, 309, 356, 378, 432, 443, 474
FaqI GGGAC 3 cut(s) 59, 321, 506
FatI CATG 3 cut(s) 274, 376, 430
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 2 cut(s) 125, 639
FokI GGATG 4 cut(s) 99, 528, 675, 816
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 125, 639
FspBI CTAG 1 cut(s) 323
GlaI GCGC 1 cut(s) 128
GluI GCNGC 2 cut(s) 125, 639
GsaI CCCAGC 1 cut(s) 222
GsuI CTGGAG 2 cut(s) 29, 782
HaeIII GGCC 1 cut(s) 169
HapII CCGG 1 cut(s) 116
HhaI GCGC 1 cut(s) 129
Hin1II CATG 3 cut(s) 278, 380, 434
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 3 cut(s) 4, 193, 661
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 601
Hpy188I TCNGA 3 cut(s) 231, 293, 744
Hpy188III TCNNGA 5 cut(s) 8, 275, 652, 761, 848
Hpy8I GTNNAC 1 cut(s) 601
HpyAV CCTTC 4 cut(s) 38, 67, 119, 349
HpyCH4III ACNGT 1 cut(s) 797
HpyCH4V TGCA 3 cut(s) 304, 536, 638
HpyF3I CTNAG 4 cut(s) 230, 261, 506, 562
Hsp92II CATG 3 cut(s) 278, 380, 434
HspAI GCGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 3 cut(s) 255, 778, 799
LmnI GCTCC 4 cut(s) 72, 121, 763, 818
Lsp1109I GCAGC 2 cut(s) 136, 650
LweI GCATC 3 cut(s) 625, 700, 742
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 841
MalI GATC 3 cut(s) 257, 780, 801
MbiI CCGCTC 1 cut(s) 510
MboI GATC 3 cut(s) 255, 778, 799
MboII GAAGA 7 cut(s) 13, 50, 276, 464, 479, 692, 788
MhlI GDGCHC 2 cut(s) 51, 69
MluCI AATT 5 cut(s) 16, 198, 404, 542, 656
MlyI GAGTC 2 cut(s) 202, 670
MmeI TCCRAC 1 cut(s) 291
MroXI GAANNNNTTC 2 cut(s) 20, 404
MseI TTAA 1 cut(s) 594
MslI CAYNNNNRTG 1 cut(s) 366
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 3 cut(s) 35, 314, 834
MvaI CCWGG 3 cut(s) 35, 314, 834
NcoI CCATGG 1 cut(s) 376
NdeII GATC 3 cut(s) 255, 778, 799
NlaIII CATG 3 cut(s) 278, 380, 434
NlaIV GGNNCC 3 cut(s) 225, 612, 814
PagI TCATGA 1 cut(s) 274
PceI AGGCCT 1 cut(s) 169
PdmI GAANNNNTTC 2 cut(s) 20, 404
PfeI GAWTC 1 cut(s) 4
PfoI TCCNGGA 2 cut(s) 33, 832
PkrI GCNGC 2 cut(s) 126, 640
PleI GAGTC 2 cut(s) 201, 669
PpsI GAGTC 2 cut(s) 201, 669
PpuMI RGGWCCY 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 326
Psp6I CCWGG 3 cut(s) 33, 312, 832
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 3 cut(s) 33, 312, 832
PspN4I GGNNCC 3 cut(s) 225, 612, 814
PspPI GGNCC 1 cut(s) 326
PspPPI RGGWCCY 1 cut(s) 326
RsaI GTAC 2 cut(s) 602, 686
RsaNI GTAC 2 cut(s) 601, 685
RseI CAYNNNNRTG 1 cut(s) 366
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 2 cut(s) 125, 639
Sau3AI GATC 3 cut(s) 255, 778, 799
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 2 cut(s) 202, 670
ScrFI CCNGG 3 cut(s) 35, 314, 834
SduI GDGCHC 2 cut(s) 51, 69
SetI ASST 8 cut(s) 59, 69, 331, 449, 561, 600, 616, 643
SfaNI GCATC 3 cut(s) 625, 700, 742
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 366
Sse9I AATT 5 cut(s) 16, 198, 404, 542, 656
SseBI AGGCCT 1 cut(s) 169
SsiI CCGC 1 cut(s) 510
SspI AATATT 2 cut(s) 483, 727
SspMI CTAG 1 cut(s) 323
SstI GAGCTC 1 cut(s) 69
StuI AGGCCT 1 cut(s) 169
StyD4I CCNGG 3 cut(s) 33, 312, 832
StyI CCWWGG 3 cut(s) 170, 376, 447
TaaI ACNGT 1 cut(s) 797
TasI AATT 5 cut(s) 16, 198, 404, 542, 656
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 1 cut(s) 802
TseI GCWGC 2 cut(s) 124, 638
TspDTI ATGAA 6 cut(s) 17, 101, 291, 471, 789, 818
TspGWI ACGGA 1 cut(s) 775
TspRI CASTG 1 cut(s) 802
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 16
XmnI GAANNNNTTC 2 cut(s) 20, 404
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.