Rh2BG613900

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000561
Physical Location & Seq
Reverse (-)
83676151 .. 83681221
5071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG613900.1

Sequence Viewer

Length: 270 bp
ATGAATCTGGAGGAGAATTTTTTCCAGTATTTCCAGGAAGACGAAGAGCACACTACCTTCCCCAAGCTCCCTGTCCCTACTACTTCAACTCCATTTGACGATTTCACCCTTCATCTGGTGGAGCAGCACAGAGAGACATTGGAGGAGACCACCCAAAATGGGTTCAGGCCTTGGAAGTGGAAAAGTCCATTGAGTCCAATTCCCAAGAGAGTTGGAGATTGTGGAATATCAAGAATCAATCACAATACTTTGGTATCTGGTTCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

89

Amino Acids

10.38

Weight (kDa)

5.21

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 115, 159
AgsI TTSAA 1 cut(s) 87
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 2 cut(s) 128, 140
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 16
Asp700I GAANNNNTTC 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 97
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 2 cut(s) 128, 140
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 159
Bse1I ACTGG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 115, 159
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 2 cut(s) 26, 158
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 51
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 115, 159
BsmAI GTCTC 2 cut(s) 128, 140
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 51
BspANI GGCC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 39
BspTNI GGTCTC 1 cut(s) 140
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 39
BstMAI GTCTC 2 cut(s) 128, 140
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 169
CviJI RGCY 2 cut(s) 67, 169
CviKI_1 RGCY 2 cut(s) 67, 169
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 170
Eco147I AGGCCT 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaqI GGGAC 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 169
HinfI GANTC 3 cut(s) 4, 193, 234
HphI GGTGA 1 cut(s) 97
Hpy188III TCNNGA 2 cut(s) 8, 231
HpyAV CCTTC 2 cut(s) 67, 119
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 72, 121
LpnPI CCDG 7 cut(s) 20, 38, 47, 84, 101, 151, 243
Lsp1109I GCAGC 1 cut(s) 136
MboII GAAGA 2 cut(s) 50, 56
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 2 cut(s) 16, 198
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 2 cut(s) 4, 136
MroXI GAANNNNTTC 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
PceI AGGCCT 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 4, 234
PfoI TCCNGGA 1 cut(s) 33
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 39
SatI GCNGC 1 cut(s) 125
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 51
SetI ASST 2 cut(s) 59, 69
Sse9I AATT 2 cut(s) 16, 198
SseBI AGGCCT 1 cut(s) 169
StuI AGGCCT 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 170
TasI AATT 2 cut(s) 16, 198
TfiI GAWTC 2 cut(s) 4, 234
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 17, 101
XapI RAATTY 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.