RchiOBHm_Chr6g0258181

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000561
Physical Location & Seq
Reverse (-)
13563052 .. 13563558
507 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23151

Sequence Viewer

Length: 168 bp
ATGCCTCCTCCAAAAGATGCTTGCCAAGACAATATTCAAACGACAAGTCTGACAATAGATGCTATTCTGGAGCGTGTAGATGAAGATCACTCCAAGGATTACAGTGATCATCGTTTTGGCTCCAATCTACTATTTCATCCAGGACTTGTCACTCTTGAAGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.2

Weight (kDa)

4.42

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 38, 158
AjnI CCWGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 7, 49
BpmI CTGGAG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 84
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 136
BseJI GATNNNNATC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 85, 106
BspLI GGNNCC 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 85, 106
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 22
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 2 cut(s) 88, 109
BstMBI GATC 2 cut(s) 85, 106
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 22
CviJI RGCY 1 cut(s) 120
CviKI_1 RGCY 1 cut(s) 120
DpnI GATC 2 cut(s) 87, 108
DpnII GATC 2 cut(s) 85, 106
Eco130I CCWWGG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FbaI TGATCA 1 cut(s) 106
FokI GGATG 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 68, 155
HpyCH4III ACNGT 1 cut(s) 104
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 85, 106
LmnI GCTCC 2 cut(s) 70, 125
LpnPI CCDG 3 cut(s) 53, 126, 153
LweI GCATC 2 cut(s) 7, 49
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 87, 108
MboI GATC 2 cut(s) 85, 106
MboII GAAGA 1 cut(s) 95
MnlI CCTC 2 cut(s) 15, 18
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
NdeII GATC 2 cut(s) 85, 106
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 85, 106
ScrFI CCNGG 1 cut(s) 141
SfaNI GCATC 2 cut(s) 7, 49
SgeI CNNG 9 cut(s) 33, 38, 57, 80, 86, 106, 152, 153, 158
SspI AATATT 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 104
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 96, 125
TspRI CASTG 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.