MD05G1077500.v1.1

B3 domain-containing protein Os01g0234100-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000561
Physical Location & Seq
Forward (+)
16565798 .. 16566088
291 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1077500.v1.1.491

Sequence Viewer

Length: 291 bp
ATGTTATTAATTTTTCTATTGACGGACACTGTCATTTGTATTTGCCATTCCCTCGAAGTTGAAGGTGGGGAAAAATATAGAGTGACGTTTCTTGGGGAGAGGAGGATAGTCAATGCTGGATGGCTAAAGTTTTCTACTGCAAACAAGTTACTTGTTGGCGACCGTTTAGTTTTTCATTTGGTCAGGCCTTTGAAGTTTAAGGTAGTCACTGTTGTTTCCGGGTACATAGTTCTCTTTCTCGTAAATTTTACAAGAAACAGCTTGGTTCTTAATACCCTCCTGTCCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

97

Amino Acids

10.88

Weight (kDa)

9.69

Isoelectric Point (pI)

11.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 244
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 2 cut(s) 62, 193
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
AoxI GGCC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 244
AseI ATTAAT 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 220
BccI CCATC 1 cut(s) 114
BcnI CCSGG 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 220
BpuMI CCSGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 115
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 219
BsnI GGCC 1 cut(s) 187
BspANI GGCC 1 cut(s) 187
Bst4CI ACNGT 3 cut(s) 31, 164, 211
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 125
BstMCI CGRYCG 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 218
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 125
BtsIMutI CAGTG 2 cut(s) 27, 207
Csp6I GTAC 1 cut(s) 223
CviJI RGCY 3 cut(s) 124, 187, 261
CviKI_1 RGCY 3 cut(s) 124, 187, 261
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 187
FaiI YATR 2 cut(s) 78, 227
FokI GGATG 1 cut(s) 132
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 219
HpaII CCGG 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 285
Hpy8I GTNNAC 1 cut(s) 285
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 3 cut(s) 31, 164, 211
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 86
LpnPI CCDG 3 cut(s) 102, 169, 232
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 3 cut(s) 82, 147, 205
MluCI AATT 2 cut(s) 9, 244
MnlI CCTC 4 cut(s) 62, 93, 96, 287
MseI TTAA 3 cut(s) 8, 198, 270
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 220
NciI CCSGG 1 cut(s) 220
NmuCI GTSAC 2 cut(s) 82, 205
PceI AGGCCT 1 cut(s) 187
PflFI GACNNNGTC 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 8
PsyI GACNNNGTC 1 cut(s) 29
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 3 cut(s) 8, 198, 270
ScrFI CCNGG 1 cut(s) 220
SetI ASST 4 cut(s) 67, 89, 204, 263
Sse9I AATT 2 cut(s) 9, 244
SseBI AGGCCT 1 cut(s) 187
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 218
TaaI ACNGT 3 cut(s) 31, 164, 211
TaiI ACGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 54
TasI AATT 2 cut(s) 9, 244
Tru1I TTAA 3 cut(s) 8, 198, 270
Tru9I TTAA 3 cut(s) 8, 198, 270
TscAI CASTG 2 cut(s) 34, 214
TseFI GTSAC 2 cut(s) 82, 205
Tsp45I GTSAC 2 cut(s) 82, 205
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 2 cut(s) 34, 214
Tth111I GACNNNGTC 1 cut(s) 29
VspI ATTAAT 1 cut(s) 8
XapI RAATTY 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.