Rorug05G0578100

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000561
Physical Location & Seq
Reverse (-)
77413890 .. 77414261
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0578100.1

Sequence Viewer

Length: 372 bp
ATGGAGGAGAGAGAAGGCGAGGAGAAAGAGACAGAGTTGAAGAAGAAGAAGCGGGTCCTGGTGGCCCAGGTCTCCGACGACGCCGTGACTCGGCTCAGGAAGTTGGTGATGATGTCCAACGCGGGTCGGATAGGTGAGAGCTCCATTGCAGACGGTGTCCTACAGGTCGGATGTGAGGCACGTGGAGCGGATGAGGTCGAAGGCCAGCTTCTTGCAGACGGCGGAGGCGGGGGAGGCGACGATATATGTGAAGGCGGACTTGGCGAGGATAGAGTTGTAGAGGGAGATGGGCTTGCTGGGTTCTTCGGAGCTGCCCATCGGAAAGTGGTGGGTTCTGGAGAATTGGAGATGACAATGAGGTGGGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

123

Amino Acids

12.98

Weight (kDa)

4.65

Isoelectric Point (pI)

27.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 188
AccII CGCG 1 cut(s) 122
AciI CCGC 6 cut(s) 52, 122, 188, 222, 228, 255
AcvI CACGTG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 2 cut(s) 57, 66
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 3 cut(s) 141, 208, 311
AluI AGCT 3 cut(s) 141, 208, 311
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 23, 76
AoxI GGCC 2 cut(s) 63, 202
ApeKI GCWGC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 55, 64
AsuHPI GGTGA 2 cut(s) 118, 146
AvaII GGWCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 143
BbrPI CACGTG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 298
BccI CCATC 2 cut(s) 281, 324
BceAI ACGGC 2 cut(s) 68, 235
BciT130I CCWGG 2 cut(s) 59, 68
BcoDI GTCTC 2 cut(s) 23, 76
BfmI CTRYAG 1 cut(s) 161
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 2 cut(s) 59, 68
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 55, 64
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 59, 68
BpmI CTGGAG 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 2 cut(s) 59, 68
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 2 cut(s) 176, 196
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 109
BseRI GAGGAG 2 cut(s) 20, 35
BseXI GCAGC 1 cut(s) 298
BseYI CCCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 65, 204
BsiHKAI GWGCWC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 2 cut(s) 23, 76
BsnI GGCC 2 cut(s) 65, 204
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 143
BspACI CCGC 6 cut(s) 52, 122, 188, 222, 228, 255
BspANI GGCC 2 cut(s) 65, 204
BspCNI CTCAG 1 cut(s) 108
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 76
BsrBI CCGCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 66
BssNI GRCGYC 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 59, 68
Bst4CI ACNGT 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 182
BstC8I GCNNGC 2 cut(s) 206, 294
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 2 cut(s) 176, 196
BstFNI CGCG 1 cut(s) 122
BstMAI GTCTC 2 cut(s) 23, 76
BstMWI GCNNNNNNNGC 3 cut(s) 185, 234, 261
BstNI CCWGG 2 cut(s) 59, 68
BstSCI CCNGG 2 cut(s) 57, 66
BstSFI CTRYAG 1 cut(s) 161
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 65, 204
BtsCI GGATG 2 cut(s) 176, 196
Cac8I GCNNGC 2 cut(s) 206, 294
Cfr13I GGNCC 2 cut(s) 55, 64
CseI GACGC 1 cut(s) 89
CviJI RGCY 7 cut(s) 65, 94, 141, 204, 208, 292, 311
CviKI_1 RGCY 7 cut(s) 65, 94, 141, 204, 208, 292, 311
DdeI CTNAG 1 cut(s) 95
EciI GGCGGA 2 cut(s) 237, 270
Ecl136II GAGCTC 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 141
Eco72I CACGTG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 57, 66
EcoT38I GRGCYC 1 cut(s) 143
FaiI YATR 4 cut(s) 245, 247, 368, 370
FalI AAGNNNNNCTT 4 cut(s) 192, 224, 243, 275
FauI CCCGC 3 cut(s) 45, 115, 221
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 2 cut(s) 183, 203
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 312
GluI GCNGC 1 cut(s) 312
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 2 cut(s) 65, 204
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 81
HinfI GANTC 1 cut(s) 88
HphI GGTGA 2 cut(s) 118, 146
Hpy188I TCNGA 5 cut(s) 76, 129, 170, 308, 321
Hpy188III TCNNGA 2 cut(s) 97, 336
Hpy99I CGWCG 3 cut(s) 80, 83, 242
HpyAV CCTTC 3 cut(s) 8, 194, 245
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 149, 215
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 234, 261
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 81
LmnI GCTCC 3 cut(s) 146, 185, 308
LpnPI CCDG 9 cut(s) 44, 53, 71, 80, 82, 149, 218, 282, 321
Lsp1109I GCAGC 1 cut(s) 298
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 1 cut(s) 85
MbiI CCGCTC 1 cut(s) 188
MboII GAAGA 4 cut(s) 52, 55, 58, 295
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 1 cut(s) 341
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 4 cut(s) 99, 107, 141, 148
MnlI CCTC 8 cut(s) 13, 169, 187, 218, 227, 259, 274, 351
MspR9I CCNGG 2 cut(s) 59, 68
MvaI CCWGG 2 cut(s) 59, 68
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 3 cut(s) 185, 234, 261
NlaIV GGNNCC 1 cut(s) 56
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 85
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 82
PmaCI CACGTG 1 cut(s) 182
PmlI CACGTG 1 cut(s) 182
PpsI GAGTC 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 182
PpuMI RGGWCCY 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 57, 66
PspCI CACGTG 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 2 cut(s) 57, 66
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 55, 64
PspPPI RGGWCCY 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 155
SacI GAGCTC 1 cut(s) 143
SatI GCNGC 1 cut(s) 312
Sau96I GGNCC 2 cut(s) 55, 64
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 2 cut(s) 59, 68
SduI GDGCHC 1 cut(s) 143
SetI ASST 9 cut(s) 72, 136, 143, 168, 184, 198, 210, 313, 362
SfcI CTRYAG 1 cut(s) 161
SinI GGWCC 1 cut(s) 55
Sse9I AATT 1 cut(s) 341
SsiI CCGC 6 cut(s) 52, 122, 188, 222, 228, 255
SstI GAGCTC 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 57, 66
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 198
TasI AATT 1 cut(s) 341
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 85
Tth111I GACNNNGTC 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.