Rh7BG391100

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000561
Physical Location & Seq
Forward (+)
42986760 .. 42990092
3333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG391100.1

Sequence Viewer

Length: 543 bp
ATGGCGAAGCCGATATCTAATTCTACTGTAGCGCCTCTGATTTGTTATCCACAATCAGAAGCAGAAGACTGCGAAATGAGCCAAGAGGCCAAGAGAAGTGTTCCAGGGACTAGGCCGACGAAGCTAAATTTCGACGAACCGAAACCCTCGTTGGCTGTCACCACCTCCATCGTTACTGATATGATCACCAATTATTCAATCAGTCTCATCGTCATAGCCATGGTGGAGAATTTCTTGACTGGAGGAGAATTTCTTGGGGAATTCATGAATCTGGAGGAGAATTTCTTCCAGTATTTCCAGGAAGACGAAGACCTTACTACTTCAACTCCATTTGACGATTTCACCCTTCATCCGCAGGTGGAGCAGCACAGAGAGACATTGGAGGAGACCACCCAAAATGGGTTCAGGCCTTGGAAGTGGAAAAGTCCATTGAGTCCAATTCCCAAGAGAAAAAATGCTGGGGATCCTTGCATCCTCAATAGCTCCATCGCTCCCTCAATAGCTCTAACTCACCCATCGAGCATCACTGACTTCAATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

180

Amino Acids

20.19

Weight (kDa)

4.57

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 346
AciI CCGC 1 cut(s) 353
AclWI GGATC 2 cut(s) 458, 471
AcsI RAATTY 5 cut(s) 127, 229, 248, 260, 280
AfiI CCNNNNNNNGG 1 cut(s) 399
AgsI TTSAA 3 cut(s) 198, 324, 535
AjnI CCWGG 2 cut(s) 103, 297
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 3 cut(s) 124, 483, 503
AluI AGCT 3 cut(s) 124, 483, 503
Alw26I GTCTC 3 cut(s) 209, 368, 380
AlwI GGATC 2 cut(s) 458, 471
AoxI GGCC 3 cut(s) 87, 113, 407
ApeKI GCWGC 1 cut(s) 364
ApoI RAATTY 5 cut(s) 127, 229, 248, 260, 280
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 34
AsuHPI GGTGA 4 cut(s) 151, 178, 334, 503
BamHI GGATCC 1 cut(s) 463
BbsI GAAGAC 3 cut(s) 72, 309, 315
BbvI GCAGC 1 cut(s) 376
BccI CCATC 3 cut(s) 176, 494, 523
BciT130I CCWGG 2 cut(s) 105, 299
BclI TGATCA 1 cut(s) 183
BcoDI GTCTC 3 cut(s) 209, 368, 380
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 2 cut(s) 27, 539
BfoI RGCGCY 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 366
Bme1390I CCNGG 2 cut(s) 105, 299
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 2 cut(s) 105, 299
BmsI GCATC 2 cut(s) 480, 531
BpiI GAAGAC 3 cut(s) 72, 309, 315
BpmI CTGGAG 2 cut(s) 261, 293
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 3 cut(s) 104, 219, 410
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 2 cut(s) 244, 289
BseBI CCWGG 2 cut(s) 105, 299
BseDI CCNNGG 3 cut(s) 104, 219, 410
BseGI GGATG 2 cut(s) 349, 471
BseLI CCNNNNNNNGG 1 cut(s) 399
BseNI ACTGG 2 cut(s) 244, 289
BseRI GAGGAG 3 cut(s) 258, 290, 398
BseXI GCAGC 1 cut(s) 376
BseYI CCCAGC 1 cut(s) 458
BshFI GGCC 3 cut(s) 89, 115, 409
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 3 cut(s) 209, 368, 380
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 3 cut(s) 89, 115, 409
Bso31I GGTCTC 1 cut(s) 380
Bsp143I GATC 2 cut(s) 183, 463
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 1 cut(s) 353
BspANI GGCC 3 cut(s) 89, 115, 409
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 465
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 2 cut(s) 458, 471
BspTNI GGTCTC 1 cut(s) 380
BsrI ACTGG 2 cut(s) 244, 289
BssECI CCNNGG 3 cut(s) 104, 219, 410
BssMI GATC 2 cut(s) 183, 463
BssT1I CCWWGG 2 cut(s) 219, 410
Bst2UI CCWGG 2 cut(s) 105, 299
Bst4CI ACNGT 1 cut(s) 28
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 349, 471
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 2 cut(s) 186, 466
BstMAI GTCTC 3 cut(s) 209, 368, 380
BstMBI GATC 2 cut(s) 183, 463
BstMWI GCNNNNNNNGC 3 cut(s) 78, 121, 361
BstNI CCWGG 2 cut(s) 105, 299
BstSCI CCNGG 2 cut(s) 103, 297
BstSFI CTRYAG 2 cut(s) 27, 539
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 3 cut(s) 72, 309, 315
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuRI GGCC 3 cut(s) 89, 115, 409
BtgI CCRYGG 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 472
BtsCI GGATG 2 cut(s) 349, 471
BtsIMutI CAGTG 1 cut(s) 525
BveI ACCTGC 1 cut(s) 346
CciI TCATGA 1 cut(s) 264
CfoI GCGC 1 cut(s) 34
CviAII CATG 2 cut(s) 220, 265
DpnI GATC 2 cut(s) 185, 465
DpnII GATC 2 cut(s) 183, 463
Eco130I CCWWGG 2 cut(s) 219, 410
Eco147I AGGCCT 1 cut(s) 409
Eco31I GGTCTC 1 cut(s) 380
Eco32I GATATC 1 cut(s) 15
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 103, 297
EcoRV GATATC 1 cut(s) 15
EcoT14I CCWWGG 2 cut(s) 219, 410
ErhI CCWWGG 2 cut(s) 219, 410
FaeI CATG 2 cut(s) 223, 268
FaiI YATR 5 cut(s) 182, 215, 221, 266, 541
FaqI GGGAC 1 cut(s) 121
FatI CATG 2 cut(s) 219, 264
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 365
FokI GGATG 2 cut(s) 336, 458
Fsp4HI GCNGC 1 cut(s) 365
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 365
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 2 cut(s) 261, 293
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 3 cut(s) 89, 115, 409
HhaI GCGC 1 cut(s) 34
Hin1II CATG 2 cut(s) 223, 268
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 2 cut(s) 268, 433
HphI GGTGA 4 cut(s) 151, 178, 334, 503
Hpy188I TCNGA 2 cut(s) 39, 58
Hpy188III TCNNGA 3 cut(s) 235, 265, 272
Hpy99I CGWCG 2 cut(s) 121, 137
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 471
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 121, 361
Hsp92II CATG 2 cut(s) 223, 268
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 2 cut(s) 183, 463
LmnI GCTCC 3 cut(s) 361, 488, 496
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 2 cut(s) 480, 531
MaeI CTAG 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 157, 172
MalI GATC 2 cut(s) 185, 465
MboI GATC 2 cut(s) 183, 463
MboII GAAGA 4 cut(s) 77, 277, 314, 320
MflI RGATCY 1 cut(s) 463
MluCI AATT 8 cut(s) 19, 127, 190, 229, 248, 260, 280, 438
MlyI GAGTC 1 cut(s) 442
MnlI CCTC 9 cut(s) 45, 79, 157, 175, 236, 268, 376, 485, 505
MroXI GAANNNNTTC 1 cut(s) 284
MslI CAYNNNNRTG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 105, 299
MvaI CCWGG 2 cut(s) 105, 299
MwoI GCNNNNNNNGC 3 cut(s) 78, 121, 361
NcoI CCATGG 1 cut(s) 219
NdeII GATC 2 cut(s) 183, 463
NlaIII CATG 2 cut(s) 223, 268
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 1 cut(s) 157
PagI TCATGA 1 cut(s) 264
PaqCI CACCTGC 1 cut(s) 346
PceI AGGCCT 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 268
PfoI TCCNGGA 1 cut(s) 297
PkrI GCNGC 1 cut(s) 366
PleI GAGTC 1 cut(s) 441
PpsI GAGTC 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 103, 297
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 2 cut(s) 103, 297
PspN4I GGNNCC 1 cut(s) 465
PsuI RGATCY 1 cut(s) 463
RseI CAYNNNNRTG 1 cut(s) 218
SatI GCNGC 1 cut(s) 365
Sau3AI GATC 2 cut(s) 183, 463
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 2 cut(s) 105, 299
SetI ASST 6 cut(s) 126, 167, 315, 360, 485, 505
SfaNI GCATC 2 cut(s) 480, 531
SfcI CTRYAG 2 cut(s) 27, 539
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 8 cut(s) 19, 127, 190, 229, 248, 260, 280, 438
SseBI AGGCCT 1 cut(s) 409
SsiI CCGC 1 cut(s) 353
SspMI CTAG 1 cut(s) 111
StuI AGGCCT 1 cut(s) 409
StyD4I CCNGG 2 cut(s) 103, 297
StyI CCWWGG 2 cut(s) 219, 410
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 132, 518
TasI AATT 8 cut(s) 19, 127, 190, 229, 248, 260, 280, 438
TfiI GAWTC 1 cut(s) 268
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 253, 281, 338
TspRI CASTG 1 cut(s) 532
XapI RAATTY 5 cut(s) 127, 229, 248, 260, 280
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.