Rorug05G0578500

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000561
Physical Location & Seq
Reverse (-)
77428891 .. 77430534
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0578500.1

Sequence Viewer

Length: 339 bp
ATGGATCAAGTTGACTTAACGCTGAAACTAAGCTTACCGTCTATCCAGGATGACGATCATCCTGATGAAGTTCCTCAGGATGTTCCTCAACATCTCAATGCACATGGTTCTTACGATATTAATCAGGGCTTGGGTTTTGGATCTGCTGTATCTGCTGGCAATGCTCATGCGTCACAATACTCTGCAATGAGCATAACTGACTTCCAGAGACACTTTGCAACGCTTGCGGGATCAAGTATCGCAAGCTCAAGCTCAAGGAGAAGCAAGGGGAGGGAACTTCAGGAGAGGGCAGCTCTAATTGATCAGAAGAAGCAGGCACAGAAGAATCCTGGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

112

Amino Acids

12.05

Weight (kDa)

5.87

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AclWI GGATC 3 cut(s) 12, 148, 238
AcuI CTGAAG 1 cut(s) 263
AjnI CCWGG 2 cut(s) 45, 328
AluBI AGCT 4 cut(s) 33, 246, 252, 293
AluI AGCT 4 cut(s) 33, 246, 252, 293
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 3 cut(s) 12, 148, 238
ApeKI GCWGC 1 cut(s) 290
AseI ATTAAT 1 cut(s) 120
AxyI CCTNAGG 1 cut(s) 75
BbvI GCAGC 1 cut(s) 302
BciT130I CCWGG 2 cut(s) 47, 330
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 202
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 47, 330
BmrFI CCNGG 2 cut(s) 47, 330
BplI GAGNNNNNCTC 2 cut(s) 277, 309
BpuEI CTTGAG 2 cut(s) 232, 238
BsaBI GATNNNNATC 2 cut(s) 54, 120
BsaJI CCNNGG 1 cut(s) 329
Bse21I CCTNAGG 1 cut(s) 75
Bse3DI GCAATG 2 cut(s) 166, 192
Bse8I GATNNNNATC 2 cut(s) 54, 120
BseBI CCWGG 2 cut(s) 47, 330
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 3 cut(s) 55, 58, 85
BseJI GATNNNNATC 2 cut(s) 54, 120
BseMI GCAATG 2 cut(s) 166, 192
BseMII CTCAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 202
Bsp143I GATC 5 cut(s) 4, 55, 140, 230, 301
BspACI CCGC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 88
BspPI GGATC 3 cut(s) 12, 148, 238
BsrDI GCAATG 2 cut(s) 166, 192
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 5 cut(s) 4, 55, 140, 230, 301
Bst2UI CCWGG 2 cut(s) 47, 330
Bst4CI ACNGT 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 4 cut(s) 157, 225, 244, 315
BstDEI CTNAG 2 cut(s) 29, 75
BstF5I GGATG 3 cut(s) 55, 58, 85
BstKTI GATC 5 cut(s) 7, 58, 143, 233, 304
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 5 cut(s) 4, 55, 140, 230, 301
BstMWI GCNNNNNNNGC 3 cut(s) 152, 161, 224
BstNI CCWGG 2 cut(s) 47, 330
BstSCI CCNGG 2 cut(s) 45, 328
BstV1I GCAGC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
Bsu36I CCTNAGG 1 cut(s) 75
BtsCI GGATG 3 cut(s) 55, 58, 85
Cac8I GCNNGC 4 cut(s) 157, 225, 244, 315
CseI GACGC 1 cut(s) 159
CviAII CATG 2 cut(s) 104, 167
CviJI RGCY 5 cut(s) 33, 129, 246, 252, 293
CviKI_1 RGCY 5 cut(s) 33, 129, 246, 252, 293
DdeI CTNAG 2 cut(s) 29, 75
DpnI GATC 5 cut(s) 6, 57, 142, 232, 303
DpnII GATC 5 cut(s) 4, 55, 140, 230, 301
Eco57I CTGAAG 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 75
EcoRII CCWGG 2 cut(s) 45, 328
FaeI CATG 2 cut(s) 107, 170
FaiI YATR 3 cut(s) 105, 168, 194
FatI CATG 2 cut(s) 103, 166
FauI CCCGC 1 cut(s) 220
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 3 cut(s) 45, 62, 92
Fsp4HI GCNGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 291
HgaI GACGC 1 cut(s) 159
Hin1II CATG 2 cut(s) 107, 170
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 4 cut(s) 62, 77, 205, 281
Hpy8I GTNNAC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 3 cut(s) 101, 185, 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 161, 224
HpyF3I CTNAG 2 cut(s) 29, 75
Hsp92II CATG 2 cut(s) 107, 170
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 5 cut(s) 4, 55, 140, 230, 301
Lsp1109I GCAGC 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 171
MalI GATC 5 cut(s) 6, 57, 142, 232, 303
MboI GATC 5 cut(s) 4, 55, 140, 230, 301
MboII GAAGA 2 cut(s) 319, 334
MflI RGATCY 1 cut(s) 140
MluCI AATT 1 cut(s) 297
MnlI CCTC 4 cut(s) 84, 96, 264, 279
MseI TTAA 2 cut(s) 17, 120
MslI CAYNNNNRTG 2 cut(s) 63, 96
MspR9I CCNGG 2 cut(s) 47, 330
MvaI CCWGG 2 cut(s) 47, 330
MwoI GCNNNNNNNGC 3 cut(s) 152, 161, 224
NdeII GATC 5 cut(s) 4, 55, 140, 230, 301
NlaIII CATG 2 cut(s) 107, 170
NmuCI GTSAC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 325
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 1 cut(s) 292
PshBI ATTAAT 1 cut(s) 120
Psp6I CCWGG 2 cut(s) 45, 328
PspGI CCWGG 2 cut(s) 45, 328
PsuI RGATCY 1 cut(s) 140
RseI CAYNNNNRTG 2 cut(s) 63, 96
SaqAI TTAA 2 cut(s) 17, 120
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 5 cut(s) 4, 55, 140, 230, 301
ScrFI CCNGG 2 cut(s) 47, 330
SetI ASST 4 cut(s) 35, 248, 254, 295
SmiMI CAYNNNNRTG 2 cut(s) 63, 96
SmlI CTYRAG 2 cut(s) 247, 253
SmoI CTYRAG 2 cut(s) 247, 253
Sse9I AATT 1 cut(s) 297
SsiI CCGC 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 45, 328
TaaI ACNGT 1 cut(s) 39
TasI AATT 1 cut(s) 297
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 2 cut(s) 17, 120
Tru9I TTAA 2 cut(s) 17, 120
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 81
VspI ATTAAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.