RchiOBHm_Chr6g0258071

B3 domain-containing protein Os01g0234100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000561
Physical Location & Seq
Reverse (-)
13498185 .. 13498880
696 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23141

Sequence Viewer

Length: 261 bp
ATGAATGTTGGATTCTTACGTGCCCGGCTGAAGCGGCTTCTGAGCCTTTCTTTCAGGACCAAACAGGCTCTGATAAGGAAATCAAAGGAGGCTAAACTTGAGCAAGCTCGTGCAAAGGACAAGGTGATAACTCTTGAATCCAAGTATTGGAAATGGAAAGAGAGGATGGTAAGTGCTGATGCTAAGATAGAGGCTCTAAAGGAAGTTGCAGAGAGGCGTGAACTTTTCTTCCAGGAAGAGGCTGTTGCTCCATGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

86

Amino Acids

10.15

Weight (kDa)

10.19

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 147
AciI CCGC 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 147, 238
AgsI TTSAA 1 cut(s) 137
AjnI CCWGG 1 cut(s) 231
AloI GAACNNNNNNTCC 2 cut(s) 213, 245
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
AlwNI CAGNNNCTG 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 25
BauI CACGAG 1 cut(s) 108
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 233
BcnI CCSGG 1 cut(s) 25
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 2 cut(s) 25, 233
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmrFI CCNGG 2 cut(s) 25, 233
BmsI GCATC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 25
BsaAI YACGTR 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 238
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 147, 238
BseMII CTCAG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 147, 238
Bsp1286I GDGCHC 1 cut(s) 25
Bsp19I CCATGG 1 cut(s) 251
BspACI CCGC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 251
BssSI CACGAG 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 251
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 41, 183
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 23, 231
BstSLI GKGCMC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 105
CaiI CAGNNNCTG 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 57
CviAII CATG 1 cut(s) 252
CviJI RGCY 8 cut(s) 28, 37, 45, 68, 92, 107, 194, 242
CviKI_1 RGCY 8 cut(s) 28, 37, 45, 68, 92, 107, 194, 242
DdeI CTNAG 2 cut(s) 41, 183
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 1 cut(s) 255
FaiI YATR 1 cut(s) 253
FatI CATG 1 cut(s) 251
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
HapII CCGG 1 cut(s) 25
Hin1II CATG 1 cut(s) 255
HinfI GANTC 2 cut(s) 12, 137
HpaII CCGG 1 cut(s) 25
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 42, 72
Hpy188III TCNNGA 2 cut(s) 55, 134
Hpy8I GTNNAC 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 113, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 41, 183
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 1 cut(s) 255
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 5 cut(s) 38, 40, 50, 218, 245
LweI GCATC 1 cut(s) 169
MaeII ACGT 1 cut(s) 19
MboII GAAGA 2 cut(s) 220, 248
MhlI GDGCHC 1 cut(s) 25
MnlI CCTC 5 cut(s) 82, 156, 184, 207, 232
MslI CAYNNNNRTG 1 cut(s) 256
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 2 cut(s) 25, 233
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 25
NcoI CCATGG 1 cut(s) 251
NlaIII CATG 1 cut(s) 255
PfeI GAWTC 2 cut(s) 12, 137
PflMI CCANNNNNTGG 1 cut(s) 147
PfoI TCCNGGA 1 cut(s) 231
PkrI GCNGC 1 cut(s) 36
Ppu21I YACGTR 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspPI GGNCC 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 256
SatI GCNGC 1 cut(s) 35
Sau96I GGNCC 1 cut(s) 57
ScrFI CCNGG 2 cut(s) 25, 233
SduI GDGCHC 1 cut(s) 25
SetI ASST 3 cut(s) 22, 109, 126
SfaNI GCATC 1 cut(s) 169
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SsiI CCGC 1 cut(s) 34
StyD4I CCNGG 2 cut(s) 23, 231
StyI CCWWGG 1 cut(s) 251
TaiI ACGT 1 cut(s) 22
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 2 cut(s) 12, 137
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.