RLG00000014639

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000561
Physical Location & Seq
Forward (+)
55638696 .. 55640017
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014639

Sequence Viewer

Length: 603 bp
ATGTCCTGGCATTTTGGCCGTCCTGAAGAGTCTTCTGTCAAAAGCCAAGTTAGAGAAATCCCAGAGAATCTAGAAGCCGAATGTCCCTTCTTTATGAAGTCCATGATACGATCAAATATTTCCGTTTGCTTTATGTTGACACTGCCTAGGAGATTCTGCAACTTGCATTTACCTTTGCATGGTACAGCAACGATAACATTGGAAGATAGAGAGGGGAAAGAATATGAAACAAAATTTCTTGCAGACAAAAGAACGCTGAGTGGTGGATGGAAAGGATTTTGTCAGGCAAAGGACTTGCGCCTTGATGATGTTCTAGTTTTCCAAGGAAAACCCTCCAATGCAGAGGAAAACCCTGCAAACCTGACAAGCTATTCATTTGTAGATAATGATGAGTCTGAGGATCAGATTACAGAGATAAGGAATTTGGCTCCAATCACGGTGGTGGATTTGATCCGGCCAGGACAAGCTGCTGATTTTGAAGATGTTAGAAGTTATGAGAATTTCGCCAGCATACAGCTAGGAGCACTATGCATTGTTAACTCCTCTGCTTATTTCAAGTCTCATGAATCTTTGCCATTTACCCGGATTTCCATTTTCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

201

Amino Acids

22.77

Weight (kDa)

5.19

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 31 - 109 1.5e-14 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 598
AclWI GGATC 2 cut(s) 408, 445
AcoI YGGCCR 2 cut(s) 16, 455
AcsI RAATTY 3 cut(s) 233, 421, 499
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 2 cut(s) 479, 556
AjnI CCWGG 2 cut(s) 5, 457
AleI CACNNNNGTG 1 cut(s) 440
AluBI AGCT 3 cut(s) 369, 467, 517
AluI AGCT 3 cut(s) 369, 467, 517
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 1 cut(s) 564
AlwI GGATC 2 cut(s) 408, 445
AoxI GGCC 2 cut(s) 16, 455
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 3 cut(s) 233, 421, 499
AspA2I CCTAGG 1 cut(s) 146
AspLEI GCGC 1 cut(s) 300
AsuC2I CCSGG 1 cut(s) 583
AvrII CCTAGG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 1 cut(s) 454
BccI CCATC 1 cut(s) 261
BceAI ACGGC 1 cut(s) 3
BciT130I CCWGG 2 cut(s) 7, 459
BcnI CCSGG 1 cut(s) 583
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 5 cut(s) 71, 147, 314, 518, 601
BisI GCNGC 1 cut(s) 468
BlnI CCTAGG 1 cut(s) 146
BlsI GCNGC 1 cut(s) 469
Bme1390I CCNGG 3 cut(s) 7, 459, 583
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 3 cut(s) 7, 459, 583
BpiI GAAGAC 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 583
BsaJI CCNNGG 2 cut(s) 146, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseBI CCWGG 2 cut(s) 7, 459
BseDI CCNNGG 2 cut(s) 146, 322
BseGI GGATG 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 2 cut(s) 248, 387
BseRI GAGGAG 1 cut(s) 532
BseXI GCAGC 1 cut(s) 454
BshFI GGCC 2 cut(s) 18, 457
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 2 cut(s) 454, 583
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 564
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 2 cut(s) 18, 457
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 3 cut(s) 110, 400, 450
BspACI CCGC 1 cut(s) 598
BspANI GGCC 2 cut(s) 18, 457
BspCNI CTCAG 2 cut(s) 249, 388
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 2 cut(s) 408, 445
BssECI CCNNGG 2 cut(s) 146, 322
BssMI GATC 3 cut(s) 110, 400, 450
BssT1I CCWWGG 2 cut(s) 146, 322
Bst2UI CCWGG 2 cut(s) 7, 459
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 2 cut(s) 257, 396
BstF5I GGATG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 3 cut(s) 113, 403, 453
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 3 cut(s) 110, 400, 450
BstNI CCWGG 2 cut(s) 7, 459
BstSCI CCNGG 3 cut(s) 5, 457, 581
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 24
BsuRI GGCC 2 cut(s) 18, 457
BtsCI GGATG 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 508
CciI TCATGA 1 cut(s) 562
CfoI GCGC 1 cut(s) 300
Csp6I GTAC 1 cut(s) 183
CspCI CAANNNNNGTGG 2 cut(s) 420, 455
CviAII CATG 3 cut(s) 103, 179, 563
CviJI RGCY 8 cut(s) 18, 45, 77, 369, 428, 457, 467, 517
CviKI_1 RGCY 8 cut(s) 18, 45, 77, 369, 428, 457, 467, 517
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 2 cut(s) 257, 396
DpnI GATC 3 cut(s) 112, 402, 452
DpnII GATC 3 cut(s) 110, 400, 450
EaeI YGGCCR 2 cut(s) 16, 455
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 146, 322
Eco57I CTGAAG 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 5, 457
EcoT14I CCWWGG 2 cut(s) 146, 322
EcoT22I ATGCAT 1 cut(s) 533
ErhI CCWWGG 2 cut(s) 146, 322
FaeI CATG 3 cut(s) 106, 182, 566
FaiI YATR 9 cut(s) 95, 104, 134, 180, 225, 495, 512, 529, 564
FaqI GGGAC 1 cut(s) 69
FatI CATG 3 cut(s) 102, 178, 562
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 5 cut(s) 71, 147, 314, 518, 601
GlaI GCGC 1 cut(s) 299
GluI GCNGC 1 cut(s) 468
HaeIII GGCC 2 cut(s) 18, 457
HapII CCGG 2 cut(s) 454, 583
HhaI GCGC 1 cut(s) 300
Hin1II CATG 3 cut(s) 106, 182, 566
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HincII GTYRAC 2 cut(s) 138, 538
HindII GTYRAC 2 cut(s) 138, 538
HinfI GANTC 5 cut(s) 29, 67, 153, 392, 566
HpaI GTTAAC 1 cut(s) 538
HpaII CCGG 2 cut(s) 454, 583
Hpy166II GTNNAC 2 cut(s) 138, 538
Hpy188I TCNGA 2 cut(s) 397, 405
Hpy188III TCNNGA 3 cut(s) 23, 71, 563
Hpy8I GTNNAC 2 cut(s) 138, 538
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4V TGCA 7 cut(s) 159, 166, 178, 242, 341, 356, 531
HpyF3I CTNAG 2 cut(s) 257, 396
Hsp92II CATG 3 cut(s) 106, 182, 566
HspAI GCGC 1 cut(s) 298
KspAI GTTAAC 1 cut(s) 538
Kzo9I GATC 3 cut(s) 110, 400, 450
LmnI GCTCC 2 cut(s) 433, 521
Lsp1109I GCAGC 1 cut(s) 454
MaeI CTAG 5 cut(s) 71, 147, 314, 518, 601
MalI GATC 3 cut(s) 112, 402, 452
MboI GATC 3 cut(s) 110, 400, 450
MboII GAAGA 4 cut(s) 24, 38, 215, 491
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 3 cut(s) 233, 421, 499
MlyI GAGTC 2 cut(s) 38, 401
MnlI CCTC 5 cut(s) 205, 337, 343, 391, 553
Mph1103I ATGCAT 1 cut(s) 533
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 440
MspI CCGG 2 cut(s) 454, 583
MspR9I CCNGG 3 cut(s) 7, 459, 583
MvaI CCWGG 2 cut(s) 7, 459
NciI CCSGG 1 cut(s) 583
NdeII GATC 3 cut(s) 110, 400, 450
NlaIII CATG 3 cut(s) 106, 182, 566
NlaIV GGNNCC 1 cut(s) 429
NsiI ATGCAT 1 cut(s) 533
OliI CACNNNNGTG 1 cut(s) 440
PagI TCATGA 1 cut(s) 562
PfeI GAWTC 3 cut(s) 67, 153, 566
PkrI GCNGC 1 cut(s) 469
PleI GAGTC 2 cut(s) 37, 400
PpsI GAGTC 2 cut(s) 37, 400
Psp6I CCWGG 2 cut(s) 5, 457
PspGI CCWGG 2 cut(s) 5, 457
PspN4I GGNNCC 1 cut(s) 429
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 440
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 3 cut(s) 110, 400, 450
SchI GAGTC 2 cut(s) 38, 401
ScrFI CCNGG 3 cut(s) 7, 459, 583
SduI GDGCHC 1 cut(s) 526
SetI ASST 5 cut(s) 175, 363, 371, 469, 519
SmiMI CAYNNNNRTG 1 cut(s) 440
Sse9I AATT 3 cut(s) 233, 421, 499
SsiI CCGC 1 cut(s) 598
SspI AATATT 1 cut(s) 118
SspMI CTAG 5 cut(s) 71, 147, 314, 518, 601
StyD4I CCNGG 3 cut(s) 5, 457, 581
StyI CCWWGG 2 cut(s) 146, 322
TaaI ACNGT 1 cut(s) 439
TasI AATT 3 cut(s) 233, 421, 499
TfiI GAWTC 3 cut(s) 67, 153, 566
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 1 cut(s) 147
TseI GCWGC 1 cut(s) 467
TspDTI ATGAA 4 cut(s) 110, 240, 363, 579
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 1 cut(s) 147
XapI RAATTY 3 cut(s) 233, 421, 499
XbaI TCTAGA 1 cut(s) 70
XmaJI CCTAGG 1 cut(s) 146
XspI CTAG 5 cut(s) 71, 147, 314, 518, 601
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.