RchiOBHm_Chr2g0168211

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000561
Physical Location & Seq
Reverse (-)
82632588 .. 82634280
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53589

Sequence Viewer

Length: 291 bp
ATGGTGGAGAATTTCTTGACTGGAGGAGAATTTCTTGGGGAATTCATGAATCTGGAGGAGAATTTTTTCCAGTATTTCCAGGAAGACGAAGAGCACACTACCTTCCCCAAGCTCCCTGTCCCTACTACTTCAACTCCATTTGACGATTTCACCCTTCATCTGGTGGAGCAGCACAGAGAGACATTGGAGGAGACCACCCAAAATGGGTTCAGGCCTTGGAAGTGGAAAAGTCCATTGAGTCCAATTCCCAAGAGAAAAAATGCTGGGGATCCACTGAGGAATGGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

96

Amino Acids

11.22

Weight (kDa)

4.82

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 263, 276
AcsI RAATTY 4 cut(s) 10, 29, 41, 61
AfiI CCNNNNNNNGG 2 cut(s) 160, 204
AgsI TTSAA 1 cut(s) 132
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 173, 185
AlwI GGATC 2 cut(s) 263, 276
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 4 cut(s) 10, 29, 41, 61
Asp700I GAANNNNTTC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 142
BamHI GGATCC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 173, 185
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 2 cut(s) 42, 74
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 204
Bse1I ACTGG 2 cut(s) 25, 70
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 215
BseLI CCNNNNNNNGG 2 cut(s) 160, 204
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 2 cut(s) 25, 70
BseRI GAGGAG 3 cut(s) 39, 71, 203
BseXI GCAGC 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 263
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 96
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 160, 204
BsmAI GTCTC 2 cut(s) 173, 185
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 267
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 2 cut(s) 263, 276
BspQI GCTCTTC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 185
BsrI ACTGG 2 cut(s) 25, 70
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 275
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 2 cut(s) 173, 185
BstMBI GATC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 272
CciI TCATGA 1 cut(s) 45
CviAII CATG 1 cut(s) 46
CviJI RGCY 2 cut(s) 112, 214
CviKI_1 RGCY 2 cut(s) 112, 214
DdeI CTNAG 1 cut(s) 275
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 215
Eco147I AGGCCT 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 1 cut(s) 49
FaiI YATR 1 cut(s) 47
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 170
GsaI CCCAGC 1 cut(s) 267
GsuI CTGGAG 2 cut(s) 42, 74
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 1 cut(s) 49
HinfI GANTC 2 cut(s) 49, 238
HphI GGTGA 1 cut(s) 142
Hpy188III TCNNGA 3 cut(s) 16, 46, 53
HpyAV CCTTC 2 cut(s) 112, 164
HpyF3I CTNAG 1 cut(s) 275
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 1 cut(s) 268
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 117, 166
LpnPI CCDG 9 cut(s) 6, 38, 65, 83, 92, 129, 146, 196, 249
Lsp1109I GCAGC 1 cut(s) 181
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 95, 101
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 5 cut(s) 10, 29, 41, 61, 243
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 5 cut(s) 17, 49, 181, 270, 278
MroXI GAANNNNTTC 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
NdeII GATC 1 cut(s) 268
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 270
PagI TCATGA 1 cut(s) 45
PceI AGGCCT 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 49
PfoI TCCNGGA 1 cut(s) 78
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 270
PsuI RGATCY 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 84
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 1 cut(s) 268
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 96
SetI ASST 2 cut(s) 104, 114
Sse9I AATT 5 cut(s) 10, 29, 41, 61, 243
SseBI AGGCCT 1 cut(s) 214
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 215
TasI AATT 5 cut(s) 10, 29, 41, 61, 243
TfiI GAWTC 1 cut(s) 49
TscAI CASTG 1 cut(s) 279
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 3 cut(s) 34, 62, 146
TspRI CASTG 1 cut(s) 279
XapI RAATTY 4 cut(s) 10, 29, 41, 61
XmnI GAANNNNTTC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.