Rh6AG097300

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000561
Physical Location & Seq
Reverse (-)
14305766 .. 14308219
2454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG097300.1

Sequence Viewer

Length: 873 bp
ATGAATGACAGGGAGGAGGAAATGTCCGAGGATTTCCGAGAAGAAAAACAGGAGGAGGAGAAGGACAGGATGGACATTTCCCCGCTCTCTGTCACCAGACAACAATTTGACAATTTGACCCTCCATTCAACATTCTCGGTACAGCAGAGGAAGCGCTCTAAGATCCGGACAAGTCGATTTAGTCCAACCCAAATTGTCAAATTCCACAATTTGACCCTTGATTCTCCAAACTCGGAACAGAGGCAGCCATTGGCGGAAGCTAACAAATATGGGTTCAAAACTCCCAAAGGGAAAAGACATTTGAGTCCAGGCCTTAACACCAAGCGAGAAGTTTCTAGTGATCCTCAGAGGCATGGAGGCTGCAAACGGAGTCGAACCAACCCGTCCATGTCCTGGCATTTTGGCCATCCTGAAGAGTCTTCTGTCAAAAGCCAAGTTAGAGAAATCCCAGAGAATCTAGAAGCCGAATGTCCCTTCTTTATGAAGTCCATGATACGATCAAATATTTCCGTTTGCTTTATGTTGACACTGCCTAGGAGATTCTGCAACTTGCATTTACCGTTGCATGGTACAGCAACGATAACATTGGAAGATAAAGAGGGGAAAGAATATGAAACAAAATTTCTTGCAGACAAAAGAACGCTGAGTGGGGGATGGAAAGGATTTTGTCAGGCAAAGGACTTGCGCCTTGATGATGTTCTAGTTTTCCAGTTGGTTAGCCCTTTGAAGTTCAAGGTGTACAGATTGAGACCAGAATATGATCCAAGTGAAGATGATGTAGATGCAGCTTTTGTCCTCTTGAAAATGAGTGCCTCTGAACAAACACTGTCTGAGGAAAACCCTCCTATGCAGAGGAAAACCCTGCAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

290

Amino Acids

33.65

Weight (kDa)

8.51

Isoelectric Point (pI)

67.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 160 - 245 1.3e-15 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 303
AccB7I CCANNNNNTGG 1 cut(s) 393
AccBSI CCGCTC 1 cut(s) 85
AccIII TCCGGA 1 cut(s) 165
AciI CCGC 2 cut(s) 83, 254
AclWI GGATC 3 cut(s) 157, 335, 755
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 2 cut(s) 200, 620
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 3 cut(s) 141, 571, 740
AfeI AGCGCT 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 393, 566
AgsI TTSAA 5 cut(s) 129, 277, 727, 733, 802
AjnI CCWGG 2 cut(s) 307, 392
AluBI AGCT 2 cut(s) 260, 788
AluI AGCT 2 cut(s) 260, 788
Alw26I GTCTC 1 cut(s) 742
AlwI GGATC 3 cut(s) 157, 335, 755
Aor13HI TCCGGA 1 cut(s) 165
Aor51HI AGCGCT 1 cut(s) 155
AoxI GGCC 2 cut(s) 310, 403
ApeKI GCWGC 3 cut(s) 244, 360, 785
ApoI RAATTY 2 cut(s) 200, 620
AspA2I CCTAGG 1 cut(s) 533
AspLEI GCGC 2 cut(s) 156, 687
AsuHPI GGTGA 1 cut(s) 85
AvrII CCTAGG 1 cut(s) 533
BalI TGGCCA 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 411
BbvI GCAGC 3 cut(s) 256, 347, 797
BccI CCATC 3 cut(s) 64, 414, 648
BciT130I CCWGG 2 cut(s) 309, 394
BcoDI GTCTC 1 cut(s) 742
BfaI CTAG 4 cut(s) 336, 458, 534, 701
BfoI RGCGCY 1 cut(s) 157
BisI GCNGC 3 cut(s) 245, 361, 786
BlnI CCTAGG 1 cut(s) 533
BlsI GCNGC 3 cut(s) 246, 362, 787
Bme1390I CCNGG 2 cut(s) 309, 394
BmrFI CCNGG 2 cut(s) 309, 394
BmsI GCATC 1 cut(s) 772
BpiI GAAGAC 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 742
BsaJI CCNNGG 2 cut(s) 27, 533
BsaWI WCCGGW 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 2 cut(s) 393, 566
Bse1I ACTGG 1 cut(s) 709
BseAI TCCGGA 1 cut(s) 165
BseBI CCWGG 2 cut(s) 309, 394
BseDI CCNNGG 2 cut(s) 27, 533
BseGI GGATG 3 cut(s) 75, 406, 659
BseLI CCNNNNNNNGG 2 cut(s) 393, 566
BseMII CTCAG 3 cut(s) 359, 635, 822
BseNI ACTGG 1 cut(s) 709
BseRI GAGGAG 3 cut(s) 29, 68, 71
BseXI GCAGC 3 cut(s) 256, 347, 797
BshFI GGCC 2 cut(s) 312, 405
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 2 cut(s) 393, 566
BsmAI GTCTC 1 cut(s) 742
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 2 cut(s) 312, 405
Bso31I GGTCTC 1 cut(s) 742
Bsp13I TCCGGA 1 cut(s) 165
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 4 cut(s) 162, 340, 497, 760
BspACI CCGC 2 cut(s) 83, 254
BspANI GGCC 2 cut(s) 312, 405
BspCNI CTCAG 3 cut(s) 358, 636, 823
BspEI TCCGGA 1 cut(s) 165
BspPI GGATC 3 cut(s) 157, 335, 755
BspTNI GGTCTC 1 cut(s) 742
BsrBI CCGCTC 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 1 cut(s) 709
BssECI CCNNGG 2 cut(s) 27, 533
BssMI GATC 4 cut(s) 162, 340, 497, 760
BssT1I CCWWGG 1 cut(s) 533
Bst2UI CCWGG 2 cut(s) 309, 394
Bst4CI ACNGT 2 cut(s) 561, 828
Bst6I CTCTTC 1 cut(s) 408
BstAUI TGTACA 1 cut(s) 738
BstDEI CTNAG 4 cut(s) 159, 345, 644, 831
BstF5I GGATG 3 cut(s) 75, 406, 659
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 2 cut(s) 156, 687
BstKTI GATC 4 cut(s) 165, 343, 500, 763
BstMAI GTCTC 1 cut(s) 742
BstMBI GATC 4 cut(s) 162, 340, 497, 760
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 2 cut(s) 309, 394
BstSCI CCNGG 2 cut(s) 307, 392
BstV1I GCAGC 3 cut(s) 256, 347, 797
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuRI GGCC 2 cut(s) 312, 405
BtsCI GGATG 3 cut(s) 75, 406, 659
BtsI GCAGTG 1 cut(s) 527
BtsIMutI CAGTG 2 cut(s) 527, 824
CfoI GCGC 2 cut(s) 156, 687
Csp6I GTAC 3 cut(s) 140, 570, 739
CviAII CATG 4 cut(s) 353, 388, 490, 566
CviJI RGCY 9 cut(s) 247, 260, 312, 360, 405, 432, 464, 720, 788
CviKI_1 RGCY 9 cut(s) 247, 260, 312, 360, 405, 432, 464, 720, 788
CviQI GTAC 3 cut(s) 140, 570, 739
DdeI CTNAG 4 cut(s) 159, 345, 644, 831
DpnI GATC 4 cut(s) 164, 342, 499, 762
DpnII GATC 4 cut(s) 162, 340, 497, 760
DrdI GACNNNNNNGTC 1 cut(s) 303
DseDI GACNNNNNNGTC 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
EciI GGCGGA 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 533
Eco147I AGGCCT 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 742
Eco47III AGCGCT 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 432
EcoRII CCWGG 2 cut(s) 307, 392
EcoT14I CCWWGG 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 533
FaeI CATG 4 cut(s) 356, 391, 493, 569
FaqI GGGAC 1 cut(s) 456
FatI CATG 4 cut(s) 352, 387, 489, 565
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 245, 361, 786
FokI GGATG 3 cut(s) 82, 393, 666
Fsp4HI GCNGC 3 cut(s) 245, 361, 786
FspBI CTAG 4 cut(s) 336, 458, 534, 701
GlaI GCGC 2 cut(s) 155, 686
GluI GCNGC 3 cut(s) 245, 361, 786
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 2 cut(s) 312, 405
HapII CCGG 1 cut(s) 166
HhaI GCGC 2 cut(s) 156, 687
Hin1II CATG 4 cut(s) 356, 391, 493, 569
Hin6I GCGC 2 cut(s) 154, 685
HinP1I GCGC 2 cut(s) 154, 685
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 6 cut(s) 221, 304, 370, 416, 454, 540
HpaII CCGG 1 cut(s) 166
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 525, 739
Hpy188I TCNGA 6 cut(s) 28, 38, 235, 348, 817, 832
Hpy188III TCNNGA 4 cut(s) 166, 410, 458, 799
Hpy8I GTNNAC 2 cut(s) 525, 739
HpyAV CCTTC 2 cut(s) 55, 484
HpyCH4III ACNGT 2 cut(s) 561, 828
HpyCH4V TGCA 8 cut(s) 363, 546, 553, 565, 629, 785, 850, 865
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 4 cut(s) 159, 345, 644, 831
Hsp92II CATG 4 cut(s) 356, 391, 493, 569
HspAI GCGC 2 cut(s) 154, 685
Kpn2I TCCGGA 1 cut(s) 165
Kzo9I GATC 4 cut(s) 162, 340, 497, 760
Lsp1109I GCAGC 3 cut(s) 256, 347, 797
LweI GCATC 1 cut(s) 772
MaeI CTAG 4 cut(s) 336, 458, 534, 701
MaeIII GTNAC 1 cut(s) 91
MalI GATC 4 cut(s) 164, 342, 499, 762
MbiI CCGCTC 1 cut(s) 85
MboI GATC 4 cut(s) 162, 340, 497, 760
MboII GAAGA 5 cut(s) 53, 411, 425, 602, 782
MflI RGATCY 1 cut(s) 162
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 6 cut(s) 104, 112, 192, 200, 208, 620
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 3 cut(s) 313, 379, 425
MmeI TCCRAC 1 cut(s) 209
Mox20I TGGCCA 1 cut(s) 405
MroI TCCGGA 1 cut(s) 165
MscI TGGCCA 1 cut(s) 405
MseI TTAA 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 405
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 2 cut(s) 309, 394
MvaI CCWGG 2 cut(s) 309, 394
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 4 cut(s) 162, 340, 497, 760
NlaIII CATG 4 cut(s) 356, 391, 493, 569
NmuCI GTSAC 1 cut(s) 91
PceI AGGCCT 1 cut(s) 312
PfeI GAWTC 3 cut(s) 221, 454, 540
PflMI CCANNNNNTGG 1 cut(s) 393
PkrI GCNGC 3 cut(s) 246, 362, 787
PleI GAGTC 3 cut(s) 312, 378, 424
PpsI GAGTC 3 cut(s) 312, 378, 424
Psp6I CCWGG 2 cut(s) 307, 392
PspGI CCWGG 2 cut(s) 307, 392
PsuI RGATCY 1 cut(s) 162
RsaI GTAC 3 cut(s) 141, 571, 740
RsaNI GTAC 3 cut(s) 140, 570, 739
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 3 cut(s) 245, 361, 786
Sau3AI GATC 4 cut(s) 162, 340, 497, 760
SchI GAGTC 3 cut(s) 313, 379, 425
ScrFI CCNGG 2 cut(s) 309, 394
SetI ASST 4 cut(s) 262, 738, 790, 872
SfaNI GCATC 1 cut(s) 772
Sse9I AATT 6 cut(s) 104, 112, 192, 200, 208, 620
SseBI AGGCCT 1 cut(s) 312
SsiI CCGC 2 cut(s) 83, 254
SspI AATATT 1 cut(s) 505
SspMI CTAG 4 cut(s) 336, 458, 534, 701
StuI AGGCCT 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 307, 392
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 2 cut(s) 561, 828
TaqI TCGA 2 cut(s) 175, 373
TasI AATT 6 cut(s) 104, 112, 192, 200, 208, 620
TatI WGTACW 1 cut(s) 738
TfiI GAWTC 3 cut(s) 221, 454, 540
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 2 cut(s) 534, 831
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 3 cut(s) 244, 360, 785
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 17, 497, 627
TspGWI ACGGA 2 cut(s) 382, 499
TspRI CASTG 2 cut(s) 534, 831
Van91I CCANNNNNTGG 1 cut(s) 393
XapI RAATTY 2 cut(s) 200, 620
XbaI TCTAGA 1 cut(s) 457
XmaJI CCTAGG 1 cut(s) 533
XspI CTAG 4 cut(s) 336, 458, 534, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.