RchiOBHm_Chr6g0256791

B3 domain-containing protein Os01g0234100-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000561
Physical Location & Seq
Forward (+)
12031014 .. 12031516
503 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23037

Sequence Viewer

Length: 462 bp
ATGGTGTATTATGATCTATGCTACTCACAAAGGTCATTTCTGCACAACCATCTCCTCAAAAGTATTAATGGTAAGTTAGCTGCTGAAATAATAACCGAAACGATTAACATCGCTAATGCCATTAGAGCTTGCAGGCTTTCCACCCCCCACGGTGCTTATGTATTGTGGGAGAAGACTTTAGATGCCTTTGAGATTTTGGGTATGAATGTTGGATTCTTACGTACCAGGCTGAAGCGGCTTCTGAGCCTTTCTTTCAGGACCAAACAGGCTCTGATAAGGAAATCAAAGGAGGCTAAACTTGAGCAAGCTCGTGCAAAGGACAAGGTGATAACTCTTGAATCCAAGTATTGGAAATGGAAAGAGAGGATGGTAAGTGCTGATGCTAAGATAGAGGCTCTAAAGGAAGTTGCAGAGAGGCGTGAACTTTTCTTCCAGGAAGAGGCTGTTGCTCCATGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

153

Amino Acids

17.78

Weight (kDa)

9.66

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 348
AciI CCGC 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 2 cut(s) 348, 439
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 2 cut(s) 224, 432
AloI GAACNNNNNNTCC 2 cut(s) 414, 446
AluBI AGCT 3 cut(s) 80, 128, 308
AluI AGCT 3 cut(s) 80, 128, 308
AlwNI CAGNNNCTG 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 80
AseI ATTAAT 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 337
AvaII GGWCC 1 cut(s) 258
BauI CACGAG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 57, 361
BciT130I CCWGG 2 cut(s) 226, 434
BisI GCNGC 2 cut(s) 81, 236
BlsI GCNGC 2 cut(s) 82, 237
Bme1390I CCNGG 2 cut(s) 226, 434
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 258
BmrFI CCNGG 2 cut(s) 226, 434
BmsI GCATC 2 cut(s) 172, 370
BpiI GAAGAC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 320
BsaAI YACGTR 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 148, 452
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 439
Bse8I GATNNNNATC 1 cut(s) 107
BseBI CCWGG 2 cut(s) 226, 434
BseDI CCNNGG 2 cut(s) 148, 452
BseGI GGATG 1 cut(s) 372
BseJI GATNNNNATC 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 348, 439
BseMII CTCAG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 348, 439
Bsp143I GATC 1 cut(s) 13
Bsp19I CCATGG 1 cut(s) 452
BspACI CCGC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 234
BssECI CCNNGG 2 cut(s) 148, 452
BssMI GATC 1 cut(s) 13
BssSI CACGAG 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 452
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 226, 434
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 432
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 3 cut(s) 130, 134, 306
BstDEI CTNAG 2 cut(s) 242, 384
BstDSI CCRYGG 2 cut(s) 148, 452
BstF5I GGATG 1 cut(s) 372
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 2 cut(s) 125, 235
BstNI CCWGG 2 cut(s) 226, 434
BstSCI CCNGG 2 cut(s) 224, 432
BstSNI TACGTA 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 179
BtgI CCRYGG 2 cut(s) 148, 452
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 372
Cac8I GCNNGC 3 cut(s) 130, 134, 306
CaiI CAGNNNCTG 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 222
CviAII CATG 1 cut(s) 453
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 2 cut(s) 242, 384
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Eco105I TACGTA 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 224, 432
EcoT14I CCWWGG 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 1 cut(s) 456
FaiI YATR 5 cut(s) 12, 19, 159, 203, 454
FatI CATG 1 cut(s) 452
Fnu4HI GCNGC 2 cut(s) 81, 236
FokI GGATG 1 cut(s) 379
Fsp4HI GCNGC 2 cut(s) 81, 236
GluI GCNGC 2 cut(s) 81, 236
Hin1II CATG 1 cut(s) 456
HinfI GANTC 2 cut(s) 213, 338
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 2 cut(s) 243, 273
Hpy188III TCNNGA 2 cut(s) 256, 335
Hpy8I GTNNAC 1 cut(s) 422
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 4 cut(s) 43, 132, 314, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 235
HpyF3I CTNAG 2 cut(s) 242, 384
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 1 cut(s) 456
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 454
LpnPI CCDG 7 cut(s) 118, 211, 238, 241, 251, 419, 446
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 2 cut(s) 172, 370
MaeII ACGT 1 cut(s) 220
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 3 cut(s) 184, 421, 449
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 6 cut(s) 65, 283, 357, 385, 408, 433
MseI TTAA 2 cut(s) 66, 105
MslI CAYNNNNRTG 1 cut(s) 457
MspR9I CCNGG 2 cut(s) 226, 434
MvaI CCWGG 2 cut(s) 226, 434
MwoI GCNNNNNNNGC 2 cut(s) 125, 235
NcoI CCATGG 1 cut(s) 452
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 456
PfeI GAWTC 2 cut(s) 213, 338
PflMI CCANNNNNTGG 1 cut(s) 348
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 2 cut(s) 82, 237
Ppu21I YACGTR 1 cut(s) 221
PshBI ATTAAT 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 224, 432
PspGI CCWGG 2 cut(s) 224, 432
PspPI GGNCC 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 271
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 457
SaqAI TTAA 2 cut(s) 66, 105
SatI GCNGC 2 cut(s) 81, 236
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 258
ScrFI CCNGG 2 cut(s) 226, 434
SetI ASST 6 cut(s) 35, 82, 130, 223, 310, 327
SfaNI GCATC 2 cut(s) 172, 370
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SnaBI TACGTA 1 cut(s) 221
SsiI CCGC 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 224, 432
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 223
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 2 cut(s) 213, 338
Tru1I TTAA 2 cut(s) 66, 105
Tru9I TTAA 2 cut(s) 66, 105
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 218
Van91I CCANNNNNTGG 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 258
VspI ATTAAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.