Rh4BG034900

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000561
Physical Location & Seq
Reverse (-)
6354496 .. 6357830
3335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG034900.1

Sequence Viewer

Length: 369 bp
ATGGTGGAGAATTTCTTGACTGGAGGAGAATTTCTTGGGGAATTCATGAATCTGGAGGAGAATTTCTTCCAGTATTTCCAGGAAGACGAAGATCACACGACCTTCCCCAAGCTCCCTGTCCCTACTACTTCAACTCCATTTGACGATTTCACCCTTCATCCGGTGGAGCAGCACAGAGAGCCATCGGAGGAGACCACTCAAAATGGGTTCAGGCCTTGGAAGTGGAAAAGTCCATTTAGTCCAATTCCCAAGAGAGGGTTGGGTGAGTGGGATGGAAGAGGTTGGCAACTAGTGAGCATGAGCCACTGTAGGAGTCTTCTAGATCTTTACAGACATGGTAGGGGGTGTTGCATGCTTACTGCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

122

Amino Acids

14.3

Weight (kDa)

5.26

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 10, 29, 41, 61
AfiI CCNNNNNNNGG 3 cut(s) 160, 254, 255
AgsI TTSAA 1 cut(s) 132
AhlI ACTAGT 1 cut(s) 289
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 185
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 4 cut(s) 10, 29, 41, 61
Asp700I GAANNNNTTC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 142, 275
BbsI GAAGAC 2 cut(s) 90, 308
BbvI GCAGC 1 cut(s) 181
BccI CCATC 2 cut(s) 190, 266
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 185
BcuI ACTAGT 1 cut(s) 289
BfaI CTAG 2 cut(s) 290, 320
BfmI CTRYAG 1 cut(s) 307
BglII AGATCT 1 cut(s) 322
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 80
BpiI GAAGAC 2 cut(s) 90, 308
BpmI CTGGAG 2 cut(s) 42, 74
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 254, 255
Bse1I ACTGG 2 cut(s) 25, 70
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 157, 277
BseLI CCNNNNNNNGG 3 cut(s) 160, 254, 255
BseNI ACTGG 2 cut(s) 25, 70
BseRI GAGGAG 3 cut(s) 39, 71, 203
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 3 cut(s) 160, 254, 255
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 91, 322
BspANI GGCC 1 cut(s) 214
BspHI TCATGA 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 185
BsrI ACTGG 2 cut(s) 25, 70
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 2 cut(s) 91, 322
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 353
BstF5I GGATG 2 cut(s) 157, 277
BstKTI GATC 2 cut(s) 94, 325
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 2 cut(s) 91, 322
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 2 cut(s) 90, 308
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 157, 277
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 353
CciI TCATGA 1 cut(s) 45
CviAII CATG 4 cut(s) 46, 298, 335, 352
CviJI RGCY 4 cut(s) 112, 181, 214, 303
CviKI_1 RGCY 4 cut(s) 112, 181, 214, 303
DpnI GATC 2 cut(s) 93, 324
DpnII GATC 2 cut(s) 91, 322
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 215
Eco147I AGGCCT 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 4 cut(s) 49, 301, 338, 355
FaiI YATR 4 cut(s) 47, 299, 336, 353
FaqI GGGAC 1 cut(s) 104
FatI CATG 4 cut(s) 45, 297, 334, 351
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 2 cut(s) 144, 284
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 2 cut(s) 290, 320
GluI GCNGC 1 cut(s) 170
GsuI CTGGAG 2 cut(s) 42, 74
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 161
Hin1II CATG 4 cut(s) 49, 301, 338, 355
HinfI GANTC 2 cut(s) 49, 313
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 142, 275
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 4 cut(s) 16, 46, 53, 320
HpyAV CCTTC 2 cut(s) 112, 164
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 351, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
Hsp92II CATG 4 cut(s) 49, 301, 338, 355
Kzo9I GATC 2 cut(s) 91, 322
LmnI GCTCC 2 cut(s) 117, 166
LpnPI CCDG 8 cut(s) 6, 38, 65, 83, 92, 129, 174, 196
Lsp1109I GCAGC 1 cut(s) 181
MaeI CTAG 2 cut(s) 290, 320
MalI GATC 2 cut(s) 93, 324
MboI GATC 2 cut(s) 91, 322
MboII GAAGA 5 cut(s) 58, 95, 101, 288, 308
MflI RGATCY 1 cut(s) 322
MluCI AATT 5 cut(s) 10, 29, 41, 61, 243
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 5 cut(s) 17, 49, 181, 248, 272
MroXI GAANNNNTTC 1 cut(s) 65
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 2 cut(s) 91, 322
NlaIII CATG 4 cut(s) 49, 301, 338, 355
NspI RCATGY 1 cut(s) 355
PaeI GCATGC 1 cut(s) 355
PagI TCATGA 1 cut(s) 45
PceI AGGCCT 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 49
PfoI TCCNGGA 1 cut(s) 78
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 322
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 2 cut(s) 91, 322
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 80
SetI ASST 3 cut(s) 104, 114, 283
SfcI CTRYAG 1 cut(s) 307
SpeI ACTAGT 1 cut(s) 289
SphI GCATGC 1 cut(s) 355
Sse9I AATT 5 cut(s) 10, 29, 41, 61, 243
SseBI AGGCCT 1 cut(s) 214
SspMI CTAG 2 cut(s) 290, 320
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 308
TasI AATT 5 cut(s) 10, 29, 41, 61, 243
TfiI GAWTC 1 cut(s) 49
TscAI CASTG 1 cut(s) 311
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 3 cut(s) 34, 62, 146
TspRI CASTG 1 cut(s) 311
XapI RAATTY 4 cut(s) 10, 29, 41, 61
XbaI TCTAGA 1 cut(s) 319
XceI RCATGY 1 cut(s) 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 2 cut(s) 290, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.