Rorug05G0578600

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000561
Physical Location & Seq
Reverse (-)
77437906 .. 77440804
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0578600.1

Sequence Viewer

Length: 531 bp
ATGGATTCGCCTGACTTAACACTTAGACTCAGTTTACCGTGTGTCCAGGATGATCACAACAATGATCATCCTGAAGTTCCACAGTCTTTCAATGCACCTGGTGCTTCGAACATTATTCAGGGCTTCGGTTTTGGAGCAGCTGCTAGCAATAATGCTCATGCGACGCAATACTCTGCAATGAGTATAACTGAATTCCAGAGGTCAGTCTCAGTAACTGAGATAAGGCAACATATTCTATCTCCCCCAACAGAAATGAGGAAGTTTTGTGTCATTAACGTCTCACACAACAAAGCCAAGGTCGGGGGATCTAGAAAAAAGAAGACAACACGCTGTCAACGCCCTGCACCAAAAACTGATGATCAGAATAGGACCTGTACAAATTTTAATTGTCGGGTCAGCGAAACTCCAATGTGGCGTAGAGCACCTCTGGGGTCAAAGACACTTTGCAACGCTTGTGGGATCAAGTATCGCAAGCTCAAGCTCAAGGAGGAACAAGGGGAGGGAACATCAGGAGAGGACAGCTCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

176

Amino Acids

19.42

Weight (kDa)

9.17

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 129 - 161 1e-13 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 313, 467
AcsI RAATTY 2 cut(s) 191, 379
AcuI CTGAAG 1 cut(s) 93
AdeI CACNNNGTG 1 cut(s) 101
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 2 cut(s) 45, 97
AluBI AGCT 4 cut(s) 140, 475, 481, 522
AluI AGCT 4 cut(s) 140, 475, 481, 522
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 2 cut(s) 211, 283
AlwI GGATC 2 cut(s) 313, 467
AlwNI CAGNNNCTG 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 137, 140
ApoI RAATTY 2 cut(s) 191, 379
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AspS9I GGNCC 1 cut(s) 369
AsuII TTCGAA 1 cut(s) 107
AsuNHI GCTAGC 1 cut(s) 143
AvaII GGWCC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 2 cut(s) 127, 149
BciT130I CCWGG 2 cut(s) 47, 99
BclI TGATCA 3 cut(s) 52, 64, 358
BcoDI GTCTC 2 cut(s) 211, 283
BfaI CTAG 2 cut(s) 144, 309
BisI GCNGC 2 cut(s) 138, 141
BlsI GCNGC 2 cut(s) 139, 142
Bme1390I CCNGG 2 cut(s) 47, 99
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 369
BmrFI CCNGG 2 cut(s) 47, 99
BmtI GCTAGC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 326
BplI GAGNNNNNCTC 1 cut(s) 506
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 461, 467
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 2 cut(s) 47, 99
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 2 cut(s) 55, 67
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 3 cut(s) 43, 207, 222
BseXI GCAGC 2 cut(s) 127, 149
BsgI GTGCAG 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 2 cut(s) 211, 283
BsmBI CGTCTC 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 424
Bsp1407I TGTACA 1 cut(s) 374
Bsp143I GATC 5 cut(s) 52, 64, 305, 358, 459
BspCNI CTCAG 3 cut(s) 42, 208, 221
BspOI GCTAGC 1 cut(s) 147
BspPI GGATC 2 cut(s) 313, 467
BspT104I TTCGAA 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 183
BsrGI TGTACA 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 5 cut(s) 52, 64, 305, 358, 459
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 47, 99
Bst4CI ACNGT 2 cut(s) 39, 84
BstAPI GCANNNNNTGC 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 145, 473
BstDEI CTNAG 4 cut(s) 23, 29, 208, 216
BstF5I GGATG 2 cut(s) 55, 67
BstKTI GATC 5 cut(s) 55, 67, 308, 361, 462
BstMAI GTCTC 2 cut(s) 211, 283
BstMBI GATC 5 cut(s) 52, 64, 305, 358, 459
BstMWI GCNNNNNNNGC 2 cut(s) 101, 336
BstNI CCWGG 2 cut(s) 47, 99
BstSCI CCNGG 2 cut(s) 45, 97
BstV1I GCAGC 2 cut(s) 127, 149
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BtsCI GGATG 2 cut(s) 55, 67
Cac8I GCNNGC 2 cut(s) 145, 473
CaiI CAGNNNCTG 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 369
CseI GACGC 1 cut(s) 172
CsiI ACCWGGT 1 cut(s) 97
Csp6I GTAC 1 cut(s) 375
CspCI CAANNNNNGTGG 2 cut(s) 436, 471
CviAII CATG 1 cut(s) 158
CviJI RGCY 6 cut(s) 123, 140, 293, 475, 481, 522
CviKI_1 RGCY 6 cut(s) 123, 140, 293, 475, 481, 522
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 4 cut(s) 23, 29, 208, 216
DpnI GATC 5 cut(s) 54, 66, 307, 360, 461
DpnII GATC 5 cut(s) 52, 64, 305, 358, 459
DraIII CACNNNGTG 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 369
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 45, 97
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 1 cut(s) 161
FaiI YATR 3 cut(s) 159, 185, 231
FatI CATG 1 cut(s) 157
FbaI TGATCA 3 cut(s) 52, 64, 358
Fnu4HI GCNGC 2 cut(s) 138, 141
FokI GGATG 2 cut(s) 54, 62
Fsp4HI GCNGC 2 cut(s) 138, 141
FspBI CTAG 2 cut(s) 144, 309
GluI GCNGC 2 cut(s) 138, 141
GsuI CTGGAG 2 cut(s) 1143, 1923
HgaI GACGC 1 cut(s) 172
Hin1II CATG 1 cut(s) 161
HincII GTYRAC 1 cut(s) 335
HindII GTYRAC 1 cut(s) 335
HinfI GANTC 2 cut(s) 5, 27
Hpy166II GTNNAC 2 cut(s) 35, 335
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 4 cut(s) 71, 196, 309, 510
Hpy8I GTNNAC 2 cut(s) 35, 335
Hpy99I CGWCG 1 cut(s) 166
HpyCH4III ACNGT 2 cut(s) 39, 84
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 4 cut(s) 95, 176, 344, 447
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 336
HpyF3I CTNAG 4 cut(s) 23, 29, 208, 216
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 1 cut(s) 161
Ksp22I TGATCA 3 cut(s) 52, 64, 358
Kzo9I GATC 5 cut(s) 52, 64, 305, 358, 459
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 2 cut(s) 127, 149
MabI ACCWGGT 1 cut(s) 97
MaeI CTAG 2 cut(s) 144, 309
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 211
MalI GATC 5 cut(s) 54, 66, 307, 360, 461
MboI GATC 5 cut(s) 52, 64, 305, 358, 459
MboII GAAGA 1 cut(s) 331
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 3 cut(s) 191, 379, 385
MlyI GAGTC 1 cut(s) 21
MnlI CCTC 6 cut(s) 192, 249, 435, 481, 493, 508
MseI TTAA 3 cut(s) 17, 273, 384
MslI CAYNNNNRTG 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 47, 99
MvaI CCWGG 2 cut(s) 47, 99
MwoI GCNNNNNNNGC 2 cut(s) 101, 336
NdeII GATC 5 cut(s) 52, 64, 305, 358, 459
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 161
NspV TTCGAA 1 cut(s) 107
PfeI GAWTC 1 cut(s) 5
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 2 cut(s) 139, 142
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PpuMI RGGWCCY 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 369
Psp6I CCWGG 2 cut(s) 45, 97
PspGI CCWGG 2 cut(s) 45, 97
PspPI GGNCC 1 cut(s) 369
PspPPI RGGWCCY 1 cut(s) 369
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 3 cut(s) 17, 273, 384
SatI GCNGC 2 cut(s) 138, 141
Sau3AI GATC 5 cut(s) 52, 64, 305, 358, 459
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 2 cut(s) 47, 99
SduI GDGCHC 1 cut(s) 424
SexAI ACCWGGT 1 cut(s) 97
SfuI TTCGAA 1 cut(s) 107
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 2 cut(s) 476, 482
SmoI CTYRAG 2 cut(s) 476, 482
Sse9I AATT 3 cut(s) 191, 379, 385
SspMI CTAG 2 cut(s) 144, 309
StyD4I CCNGG 2 cut(s) 45, 97
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 39, 84
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 107
TasI AATT 3 cut(s) 191, 379, 385
TatI WGTACW 1 cut(s) 374
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 3 cut(s) 17, 273, 384
Tru9I TTAA 3 cut(s) 17, 273, 384
TseI GCWGC 2 cut(s) 137, 140
VpaK11BI GGWCC 1 cut(s) 369
XapI RAATTY 2 cut(s) 191, 379
XbaI TCTAGA 1 cut(s) 308
XspI CTAG 2 cut(s) 144, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.