B3 domain-containing protein Os01g0234100-like isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 275 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 59 |
| AatII | GACGTC | 1 cut(s) | 277 |
| Acc36I | ACCTGC | 2 cut(s) | 275, 1036 |
| AccII | CGCG | 4 cut(s) | 1043, 1275, 1277, 1476 |
| AccIII | TCCGGA | 1 cut(s) | 877 |
| AciI | CCGC | 8 cut(s) | 11, 172, 178, 352, 935, 1000, 1041, 1288 |
| AclWI | GGATC | 1 cut(s) | 390 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 994 |
| AcuI | CTGAAG | 2 cut(s) | 756, 1304 |
| AcyI | GRCGYC | 1 cut(s) | 274 |
| AfaI | GTAC | 3 cut(s) | 640, 710, 871 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 415, 901 |
| AjnI | CCWGG | 2 cut(s) | 313, 423 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 828, 860 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 1470 |
| Alw26I | GTCTC | 5 cut(s) | 22, 173, 236, 1273, 1412 |
| AlwI | GGATC | 1 cut(s) | 390 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 267, 965 |
| Aor13HI | TCCGGA | 1 cut(s) | 877 |
| AoxI | GGCC | 3 cut(s) | 3, 689, 1302 |
| ApeKI | GCWGC | 6 cut(s) | 174, 746, 962, 1074, 1133, 1189 |
| ApoI | RAATTY | 1 cut(s) | 994 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 434, 466 |
| AspLEI | GCGC | 4 cut(s) | 779, 1045, 1277, 1476 |
| AspS9I | GGNCC | 3 cut(s) | 690, 956, 1053 |
| AsuHPI | GGTGA | 4 cut(s) | 25, 189, 289, 913 |
| AvaII | GGWCC | 2 cut(s) | 956, 1053 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BbsI | GAAGAC | 4 cut(s) | 123, 132, 727, 1232 |
| BbvCI | CCTCAGC | 1 cut(s) | 1323 |
| BbvI | GCAGC | 6 cut(s) | 186, 758, 974, 1061, 1120, 1176 |
| BccI | CCATC | 3 cut(s) | 332, 618, 1064 |
| BceAI | ACGGC | 1 cut(s) | 148 |
| BciT130I | CCWGG | 2 cut(s) | 315, 425 |
| BcoDI | GTCTC | 5 cut(s) | 22, 173, 236, 1273, 1412 |
| BfaI | CTAG | 1 cut(s) | 731 |
| BfmI | CTRYAG | 2 cut(s) | 268, 1023 |
| BfuAI | ACCTGC | 2 cut(s) | 275, 1036 |
| BglII | AGATCT | 1 cut(s) | 1387 |
| BisI | GCNGC | 8 cut(s) | 175, 178, 747, 936, 963, 1075, 1134, 1190 |
| BlsI | GCNGC | 8 cut(s) | 176, 179, 748, 937, 964, 1076, 1135, 1191 |
| Bme1390I | CCNGG | 2 cut(s) | 315, 425 |
| Bme18I | GGWCC | 2 cut(s) | 956, 1053 |
| BmgT120I | GGNCC | 3 cut(s) | 690, 956, 1053 |
| BmrFI | CCNGG | 2 cut(s) | 315, 425 |
| BmrI | ACTGGG | 1 cut(s) | 154 |
| BmsI | GCATC | 5 cut(s) | 6, 532, 733, 877, 1426 |
| BmuI | ACTGGG | 1 cut(s) | 154 |
| BpiI | GAAGAC | 4 cut(s) | 123, 132, 727, 1232 |
| BpmI | CTGGAG | 1 cut(s) | 46 |
| Bpu10I | CCTNAGC | 2 cut(s) | 507, 1323 |
| BsaHI | GRCGYC | 1 cut(s) | 274 |
| BsaI | GGTCTC | 2 cut(s) | 236, 1412 |
| BsaJI | CCNNGG | 3 cut(s) | 6, 130, 1422 |
| BsaWI | WCCGGW | 1 cut(s) | 877 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 908, 938 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 415, 901 |
| Bse1I | ACTGG | 2 cut(s) | 29, 160 |
| Bse3DI | GCAATG | 1 cut(s) | 533 |
| BseAI | TCCGGA | 1 cut(s) | 877 |
| BseBI | CCWGG | 2 cut(s) | 315, 425 |
| BseDI | CCNNGG | 3 cut(s) | 6, 130, 1422 |
| BseGI | GGATG | 5 cut(s) | 319, 420, 629, 910, 1264 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 415, 901 |
| BseMI | GCAATG | 1 cut(s) | 533 |
| BseMII | CTCAG | 5 cut(s) | 84, 338, 891, 1286, 1314 |
| BseNI | ACTGG | 2 cut(s) | 29, 160 |
| BseRI | GAGGAG | 1 cut(s) | 807 |
| BseXI | GCAGC | 6 cut(s) | 186, 758, 974, 1061, 1120, 1176 |
| Bsh1236I | CGCG | 4 cut(s) | 1043, 1275, 1277, 1476 |
| Bsh1285I | CGRYCG | 1 cut(s) | 287 |
| BshFI | GGCC | 3 cut(s) | 5, 691, 1304 |
| BsiEI | CGRYCG | 1 cut(s) | 287 |
| BsiSI | CCGG | 1 cut(s) | 878 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 415, 901 |
| BsmAI | GTCTC | 5 cut(s) | 22, 173, 236, 1273, 1412 |
| BsmBI | CGTCTC | 1 cut(s) | 173 |
| BsmI | GAATGC | 1 cut(s) | 1002 |
| BsnI | GGCC | 3 cut(s) | 5, 691, 1304 |
| Bso31I | GGTCTC | 2 cut(s) | 236, 1412 |
| Bsp13I | TCCGGA | 1 cut(s) | 877 |
| Bsp1407I | TGTACA | 1 cut(s) | 708 |
| Bsp143I | GATC | 3 cut(s) | 382, 1066, 1387 |
| Bsp19I | CCATGG | 2 cut(s) | 6, 1422 |
| BspACI | CCGC | 8 cut(s) | 11, 172, 178, 352, 935, 1000, 1041, 1288 |
| BspANI | GGCC | 3 cut(s) | 5, 691, 1304 |
| BspCNI | CTCAG | 5 cut(s) | 85, 337, 892, 1287, 1315 |
| BspEI | TCCGGA | 1 cut(s) | 877 |
| BspFNI | CGCG | 4 cut(s) | 1043, 1275, 1277, 1476 |
| BspHI | TCATGA | 1 cut(s) | 385 |
| BspMAI | CTGCAG | 1 cut(s) | 272 |
| BspMI | ACCTGC | 2 cut(s) | 275, 1036 |
| BspPI | GGATC | 1 cut(s) | 390 |
| BspTNI | GGTCTC | 2 cut(s) | 236, 1412 |
| BsrDI | GCAATG | 1 cut(s) | 533 |
| BsrGI | TGTACA | 1 cut(s) | 708 |
| BsrI | ACTGG | 2 cut(s) | 29, 160 |
| BssECI | CCNNGG | 3 cut(s) | 6, 130, 1422 |
| BssMI | GATC | 3 cut(s) | 382, 1066, 1387 |
| BssNI | GRCGYC | 1 cut(s) | 274 |
| BssT1I | CCWWGG | 2 cut(s) | 6, 1422 |
| Bst2UI | CCWGG | 2 cut(s) | 315, 425 |
| Bst4CI | ACNGT | 2 cut(s) | 154, 1124 |
| Bst6I | CTCTTC | 1 cut(s) | 350 |
| BstACI | GRCGYC | 1 cut(s) | 274 |
| BstAUI | TGTACA | 1 cut(s) | 708 |
| BstC8I | GCNNGC | 2 cut(s) | 1183, 1187 |
| BstDEI | CTNAG | 8 cut(s) | 93, 324, 507, 900, 931, 1295, 1323, 1440 |
| BstDSI | CCRYGG | 3 cut(s) | 6, 130, 1422 |
| BstF5I | GGATG | 5 cut(s) | 319, 420, 629, 910, 1264 |
| BstFNI | CGCG | 4 cut(s) | 1043, 1275, 1277, 1476 |
| BstHHI | GCGC | 4 cut(s) | 779, 1045, 1277, 1476 |
| BstKTI | GATC | 3 cut(s) | 385, 1069, 1390 |
| BstMAI | GTCTC | 5 cut(s) | 22, 173, 236, 1273, 1412 |
| BstMBI | GATC | 3 cut(s) | 382, 1066, 1387 |
| BstMCI | CGRYCG | 1 cut(s) | 287 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 229, 1083, 1178 |
| BstNI | CCWGG | 2 cut(s) | 315, 425 |
| BstSCI | CCNGG | 2 cut(s) | 313, 423 |
| BstSFI | CTRYAG | 2 cut(s) | 268, 1023 |
| BstUI | CGCG | 4 cut(s) | 1043, 1275, 1277, 1476 |
| BstV1I | GCAGC | 6 cut(s) | 186, 758, 974, 1061, 1120, 1176 |
| BstV2I | GAAGAC | 4 cut(s) | 123, 132, 727, 1232 |
| BstX2I | RGATCY | 1 cut(s) | 1387 |
| BstYI | RGATCY | 1 cut(s) | 1387 |
| BsuRI | GGCC | 3 cut(s) | 5, 691, 1304 |
| BtgI | CCRYGG | 3 cut(s) | 6, 130, 1422 |
| BtgZI | GCGATG | 1 cut(s) | 1147 |
| BtsCI | GGATG | 5 cut(s) | 319, 420, 629, 910, 1264 |
| BtsI | GCAGTG | 1 cut(s) | 500 |
| BtsIMutI | CAGTG | 2 cut(s) | 500, 622 |
| BveI | ACCTGC | 2 cut(s) | 275, 1036 |
| Cac8I | GCNNGC | 2 cut(s) | 1183, 1187 |
| CaiI | CAGNNNCTG | 2 cut(s) | 267, 965 |
| CciI | TCATGA | 1 cut(s) | 385 |
| CfoI | GCGC | 4 cut(s) | 779, 1045, 1277, 1476 |
| Cfr13I | GGNCC | 3 cut(s) | 690, 956, 1053 |
| Csp6I | GTAC | 3 cut(s) | 639, 709, 870 |
| CviAII | CATG | 8 cut(s) | 7, 55, 332, 386, 539, 1097, 1423, 1491 |
| CviQI | GTAC | 3 cut(s) | 639, 709, 870 |
| DdeI | CTNAG | 8 cut(s) | 93, 324, 507, 900, 931, 1295, 1323, 1440 |
| DpnI | GATC | 3 cut(s) | 384, 1068, 1389 |
| DpnII | GATC | 3 cut(s) | 382, 1066, 1387 |
| DraI | TTTAAA | 1 cut(s) | 1455 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 59 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 59 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 350 |
| EarI | CTCTTC | 1 cut(s) | 350 |
| Eco130I | CCWWGG | 2 cut(s) | 6, 1422 |
| Eco31I | GGTCTC | 2 cut(s) | 236, 1412 |
| Eco47I | GGWCC | 2 cut(s) | 956, 1053 |
| Eco57I | CTGAAG | 2 cut(s) | 756, 1304 |
| EcoO109I | RGGNCCY | 1 cut(s) | 690 |
| EcoRII | CCWGG | 2 cut(s) | 313, 423 |
| EcoT14I | CCWWGG | 2 cut(s) | 6, 1422 |
| ErhI | CCWWGG | 2 cut(s) | 6, 1422 |
| Esp3I | CGTCTC | 1 cut(s) | 173 |
| FaeI | CATG | 8 cut(s) | 10, 58, 335, 389, 542, 1100, 1426, 1494 |
| FatI | CATG | 8 cut(s) | 6, 54, 331, 385, 538, 1096, 1422, 1490 |
| Fnu4HI | GCNGC | 8 cut(s) | 175, 178, 747, 936, 963, 1075, 1134, 1190 |
| FokI | GGATG | 5 cut(s) | 306, 407, 636, 917, 1271 |
| Fsp4HI | GCNGC | 8 cut(s) | 175, 178, 747, 936, 963, 1075, 1134, 1190 |
| FspBI | CTAG | 1 cut(s) | 731 |
| GlaI | GCGC | 4 cut(s) | 778, 1044, 1276, 1475 |
| GluI | GCNGC | 8 cut(s) | 175, 178, 747, 936, 963, 1075, 1134, 1190 |
| GsuI | CTGGAG | 1 cut(s) | 46 |
| HaeIII | GGCC | 3 cut(s) | 5, 691, 1304 |
| HapII | CCGG | 1 cut(s) | 878 |
| HhaI | GCGC | 4 cut(s) | 779, 1045, 1277, 1476 |
| Hin1I | GRCGYC | 1 cut(s) | 274 |
| Hin1II | CATG | 8 cut(s) | 10, 58, 335, 389, 542, 1100, 1426, 1494 |
| Hin6I | GCGC | 4 cut(s) | 777, 1043, 1275, 1474 |
| HinP1I | GCGC | 4 cut(s) | 777, 1043, 1275, 1474 |
| HincII | GTYRAC | 1 cut(s) | 841 |
| HindII | GTYRAC | 1 cut(s) | 841 |
| HindIII | AAGCTT | 2 cut(s) | 145, 1400 |
| HinfI | GANTC | 5 cut(s) | 89, 371, 814, 1328, 1394 |
| HpaII | CCGG | 1 cut(s) | 878 |
| HphI | GGTGA | 4 cut(s) | 25, 189, 289, 913 |
| Hpy166II | GTNNAC | 2 cut(s) | 709, 841 |
| Hpy188I | TCNGA | 5 cut(s) | 94, 327, 901, 1296, 1408 |
| Hpy188III | TCNNGA | 7 cut(s) | 282, 386, 416, 760, 878, 1051, 1391 |
| Hpy8I | GTNNAC | 2 cut(s) | 709, 841 |
| Hpy99I | CGWCG | 2 cut(s) | 125, 825 |
| HpyAV | CCTTC | 4 cut(s) | 200, 288, 560, 1340 |
| HpyCH4III | ACNGT | 2 cut(s) | 154, 1124 |
| HpyCH4IV | ACGT | 4 cut(s) | 60, 274, 469, 590 |
| HpyCH4V | TGCA | 8 cut(s) | 270, 538, 545, 644, 746, 1096, 1185, 1219 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 229, 1083, 1178 |
| HpyF3I | CTNAG | 8 cut(s) | 93, 324, 507, 900, 931, 1295, 1323, 1440 |
| HpySE526I | ACGT | 4 cut(s) | 60, 274, 469, 590 |
| Hsp92I | GRCGYC | 1 cut(s) | 274 |
| Hsp92II | CATG | 8 cut(s) | 10, 58, 335, 389, 542, 1100, 1426, 1494 |
| HspAI | GCGC | 4 cut(s) | 777, 1043, 1275, 1474 |
| Kpn2I | TCCGGA | 1 cut(s) | 877 |
| Kzo9I | GATC | 3 cut(s) | 382, 1066, 1387 |
| LmnI | GCTCC | 3 cut(s) | 229, 437, 880 |
| Lsp1109I | GCAGC | 6 cut(s) | 186, 758, 974, 1061, 1120, 1176 |
| LweI | GCATC | 5 cut(s) | 6, 532, 733, 877, 1426 |
| MaeI | CTAG | 1 cut(s) | 731 |
| MaeII | ACGT | 4 cut(s) | 60, 274, 469, 590 |
| MaeIII | GTNAC | 2 cut(s) | 586, 1018 |
| MalI | GATC | 3 cut(s) | 384, 1068, 1389 |
| MboI | GATC | 3 cut(s) | 382, 1066, 1387 |
| MflI | RGATCY | 1 cut(s) | 1387 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 5 cut(s) | 512, 863, 948, 987, 994 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 83, 365, 808 |
| MmeI | TCCRAC | 2 cut(s) | 951, 1243 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroI | TCCGGA | 1 cut(s) | 877 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 4 cut(s) | 378, 551, 702, 1454 |
| MslI | CAYNNNNRTG | 3 cut(s) | 11, 336, 1007 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 965 |
| MspI | CCGG | 1 cut(s) | 878 |
| MspR9I | CCNGG | 2 cut(s) | 315, 425 |
| Mva1269I | GAATGC | 1 cut(s) | 1002 |
| MvaI | CCWGG | 2 cut(s) | 315, 425 |
| MvnI | CGCG | 4 cut(s) | 1043, 1275, 1277, 1476 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 229, 1083, 1178 |
| NcoI | CCATGG | 2 cut(s) | 6, 1422 |
| NdeII | GATC | 3 cut(s) | 382, 1066, 1387 |
| NlaIII | CATG | 8 cut(s) | 10, 58, 335, 389, 542, 1100, 1426, 1494 |
| NmuCI | GTSAC | 2 cut(s) | 586, 1018 |
| PagI | TCATGA | 1 cut(s) | 385 |
| PaqCI | CACCTGC | 1 cut(s) | 275 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 57, 280 |
| PctI | GAATGC | 1 cut(s) | 1002 |
| PfeI | GAWTC | 2 cut(s) | 1328, 1394 |
| PflFI | GACNNNGTC | 2 cut(s) | 446, 726 |
| PkrI | GCNGC | 8 cut(s) | 176, 179, 748, 937, 964, 1076, 1135, 1191 |
| PleI | GAGTC | 3 cut(s) | 83, 365, 808 |
| PpsI | GAGTC | 3 cut(s) | 83, 365, 808 |
| Psp6I | CCWGG | 2 cut(s) | 313, 423 |
| PspGI | CCWGG | 2 cut(s) | 313, 423 |
| PspPI | GGNCC | 3 cut(s) | 690, 956, 1053 |
| PstI | CTGCAG | 1 cut(s) | 272 |
| PstNI | CAGNNNCTG | 2 cut(s) | 267, 965 |
| PsuI | RGATCY | 1 cut(s) | 1387 |
| PsyI | GACNNNGTC | 2 cut(s) | 446, 726 |
| PvuII | CAGCTG | 1 cut(s) | 965 |
| RsaI | GTAC | 3 cut(s) | 640, 710, 871 |
| RsaNI | GTAC | 3 cut(s) | 639, 709, 870 |
| RseI | CAYNNNNRTG | 3 cut(s) | 11, 336, 1007 |
| SaqAI | TTAA | 4 cut(s) | 378, 551, 702, 1454 |
| SatI | GCNGC | 8 cut(s) | 175, 178, 747, 936, 963, 1075, 1134, 1190 |
| Sau3AI | GATC | 3 cut(s) | 382, 1066, 1387 |
| Sau96I | GGNCC | 3 cut(s) | 690, 956, 1053 |
| SchI | GAGTC | 3 cut(s) | 83, 365, 808 |
| ScrFI | CCNGG | 2 cut(s) | 315, 425 |
| SfaNI | GCATC | 5 cut(s) | 6, 532, 733, 877, 1426 |
| SfcI | CTRYAG | 2 cut(s) | 268, 1023 |
| SinI | GGWCC | 2 cut(s) | 956, 1053 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 11, 336, 1007 |
| Sse9I | AATT | 5 cut(s) | 512, 863, 948, 987, 994 |
| SsiI | CCGC | 8 cut(s) | 11, 172, 178, 352, 935, 1000, 1041, 1288 |
| SspMI | CTAG | 1 cut(s) | 731 |
| StyD4I | CCNGG | 2 cut(s) | 313, 423 |
| StyI | CCWWGG | 2 cut(s) | 6, 1422 |
| TaaI | ACNGT | 2 cut(s) | 154, 1124 |
| TaiI | ACGT | 4 cut(s) | 63, 277, 472, 593 |
| TaqI | TCGA | 5 cut(s) | 51, 369, 558, 820, 1466 |
| TaqII | GACCGA | 1 cut(s) | 301 |
| TasI | AATT | 5 cut(s) | 512, 863, 948, 987, 994 |
| TatI | WGTACW | 2 cut(s) | 638, 708 |
| TauI | GCSGC | 2 cut(s) | 180, 938 |
| TfiI | GAWTC | 2 cut(s) | 1328, 1394 |
| Tru1I | TTAA | 4 cut(s) | 378, 551, 702, 1454 |
| Tru9I | TTAA | 4 cut(s) | 378, 551, 702, 1454 |
| TscAI | CASTG | 2 cut(s) | 507, 622 |
| TseFI | GTSAC | 2 cut(s) | 586, 1018 |
| TseI | GCWGC | 6 cut(s) | 174, 746, 962, 1074, 1133, 1189 |
| Tsp45I | GTSAC | 2 cut(s) | 586, 1018 |
| TspDTI | ATGAA | 4 cut(s) | 71, 182, 402, 782 |
| TspGWI | ACGGA | 1 cut(s) | 668 |
| TspRI | CASTG | 2 cut(s) | 507, 622 |
| Tth111I | GACNNNGTC | 2 cut(s) | 446, 726 |
| VpaK11BI | GGWCC | 2 cut(s) | 956, 1053 |
| XapI | RAATTY | 1 cut(s) | 994 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 431, 1315 |
| XspI | CTAG | 1 cut(s) | 731 |
| ZraI | GACGTC | 1 cut(s) | 275 |