pycom10g07620

B3 domain-containing protein Os01g0234100-like isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
9241006 .. 9243393
2388 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g07620.4

Sequence Viewer

Length: 1494 bp
ATGGCCATGGCGGTGATGCTGGACTGGAGACACCCCCAAAACTTCACACTCGACATGAACGTCAAGGAAGAAGAAGAAGAACTCGCCGACTCTGAGTATTTCCCAGAAGAAAAAGAAGACGACGAAGACCACGGCGAAGCAGAAAGCTTGACCGTTTCCCAGTTTCGTCTCCGCAGCCGCCCAAAATCCCTTCATTCACCTCCACCTTTGGTAGAGGTAGAGCAGAGGGAGCAGACATTGGAGACCAAGCAAAATCTGTTCAGCACCTGCAGACGTCCTTCACGACCGACCCATATCACCAAGCGAAAAGTTCCTGGTCATCCTCAGAAGCATGGAGATGGAGGGTGTAAGCGGAAGAGAACCATTTTCGACTCTTTTAAGGATCATGAAATATCTTTTGTGAGAAACCAAGTTCAGGACATCCAGGCAAATCTTGGAGCTGACCCCGTCTTTGTCAAGTCTATGATACGTTCAAATGTTTCCTCTTGCTTTTGTTTGACACTGCCTAAGCAATTCTGCCATTTGTATTTGCCATTGCATGATGCAACATTAACCCTCGAAGTTGAAGGTGGGGAAAAATACAGAGTGACGTTTCTTGGGGAAAGGAGGATAGTCAGTGCTGGATGGCAAAAGTTTTGTACTGCAAACAAGTTGCTTGTCGGCAACCTTTTAGTTTTCCGTTTGGTCAGGCCCTTGAAGTTTAAGGTGTACATAATGGGAAGACATAGTCTAGCTGAAGTAGATGCAGCTTTTAGCCTCTTGAAAATGAAATCCTGCGCCACCAAAGAGGTTTTTGGGAAAAAACATCTAATGACTCCTCGACGAGATGTTTCCCAAGTCAACATTCAAAAGAAAAGTTTGAAATTAGGTACTAATCCGGAGCTTGATGCCAACCAATCTGAGGATGACAATGAGGACTTCACCTCCAACTTAGCGGCAGATATTACAATTCAAGGACCAGCAGCTGATTTTGAAGATGTTAGAATAATTGAAAATTTCCGCATTCTTGTGAATGGTGTGACTATAGATACTCAACTCTCCGCGCAGGTCAGGACCATCTATTATGATCTATGCTGCTCACAAGGCTCATTTTTGCATGACAATATCCTCAAAAGTATTGACAGTAAGTTGGCTGCTGAAATAATAACCGAAACCACCAACATCGCTAATGCCATTAGAGCTTGCAAGCTGCCCCCCTCCCGTGCTGATTGTGTAATGCAGGAGAAGACTTTACACGCCTTTGAGCTGTTGGGTATGGATGTTGGATTTCTACGCGCGAGACTGAAGCGGTGTCTGAGCGTGGCCTCCAAATACGAAGTGGCTGAGGAATCAAAGAGGTATTTAGAAGGTAAAGTTGAGCAAGTTTGTATGAGGGATAAGATGAGAGATCTTGATTCAAAGCTTTCGGAGTTGAAAGAGACCATGGAAAGTTTTGATGCTAAGATAAAGGCTTTAAAAAAAAAATCGAGGAAGCGCGAACTTATCTTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

56.74

Weight (kDa)

8.3

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000561)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
AasI GACNNNNNNGTC 1 cut(s) 59
AatII GACGTC 1 cut(s) 277
Acc36I ACCTGC 2 cut(s) 275, 1036
AccII CGCG 4 cut(s) 1043, 1275, 1277, 1476
AccIII TCCGGA 1 cut(s) 877
AciI CCGC 8 cut(s) 11, 172, 178, 352, 935, 1000, 1041, 1288
AclWI GGATC 1 cut(s) 390
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 994
AcuI CTGAAG 2 cut(s) 756, 1304
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 3 cut(s) 640, 710, 871
AfiI CCNNNNNNNGG 2 cut(s) 415, 901
AjnI CCWGG 2 cut(s) 313, 423
AjuI GAANNNNNNNTTGG 2 cut(s) 828, 860
AloI GAACNNNNNNTCC 1 cut(s) 1470
Alw26I GTCTC 5 cut(s) 22, 173, 236, 1273, 1412
AlwI GGATC 1 cut(s) 390
AlwNI CAGNNNCTG 2 cut(s) 267, 965
Aor13HI TCCGGA 1 cut(s) 877
AoxI GGCC 3 cut(s) 3, 689, 1302
ApeKI GCWGC 6 cut(s) 174, 746, 962, 1074, 1133, 1189
ApoI RAATTY 1 cut(s) 994
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AspLEI GCGC 4 cut(s) 779, 1045, 1277, 1476
AspS9I GGNCC 3 cut(s) 690, 956, 1053
AsuHPI GGTGA 4 cut(s) 25, 189, 289, 913
AvaII GGWCC 2 cut(s) 956, 1053
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 4 cut(s) 123, 132, 727, 1232
BbvCI CCTCAGC 1 cut(s) 1323
BbvI GCAGC 6 cut(s) 186, 758, 974, 1061, 1120, 1176
BccI CCATC 3 cut(s) 332, 618, 1064
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 2 cut(s) 315, 425
BcoDI GTCTC 5 cut(s) 22, 173, 236, 1273, 1412
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 2 cut(s) 268, 1023
BfuAI ACCTGC 2 cut(s) 275, 1036
BglII AGATCT 1 cut(s) 1387
BisI GCNGC 8 cut(s) 175, 178, 747, 936, 963, 1075, 1134, 1190
BlsI GCNGC 8 cut(s) 176, 179, 748, 937, 964, 1076, 1135, 1191
Bme1390I CCNGG 2 cut(s) 315, 425
Bme18I GGWCC 2 cut(s) 956, 1053
BmgT120I GGNCC 3 cut(s) 690, 956, 1053
BmrFI CCNGG 2 cut(s) 315, 425
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 5 cut(s) 6, 532, 733, 877, 1426
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 4 cut(s) 123, 132, 727, 1232
BpmI CTGGAG 1 cut(s) 46
Bpu10I CCTNAGC 2 cut(s) 507, 1323
BsaHI GRCGYC 1 cut(s) 274
BsaI GGTCTC 2 cut(s) 236, 1412
BsaJI CCNNGG 3 cut(s) 6, 130, 1422
BsaWI WCCGGW 1 cut(s) 877
BsaXI ACNNNNNCTCC 2 cut(s) 908, 938
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 901
Bse1I ACTGG 2 cut(s) 29, 160
Bse3DI GCAATG 1 cut(s) 533
BseAI TCCGGA 1 cut(s) 877
BseBI CCWGG 2 cut(s) 315, 425
BseDI CCNNGG 3 cut(s) 6, 130, 1422
BseGI GGATG 5 cut(s) 319, 420, 629, 910, 1264
BseLI CCNNNNNNNGG 2 cut(s) 415, 901
BseMI GCAATG 1 cut(s) 533
BseMII CTCAG 5 cut(s) 84, 338, 891, 1286, 1314
BseNI ACTGG 2 cut(s) 29, 160
BseRI GAGGAG 1 cut(s) 807
BseXI GCAGC 6 cut(s) 186, 758, 974, 1061, 1120, 1176
Bsh1236I CGCG 4 cut(s) 1043, 1275, 1277, 1476
Bsh1285I CGRYCG 1 cut(s) 287
BshFI GGCC 3 cut(s) 5, 691, 1304
BsiEI CGRYCG 1 cut(s) 287
BsiSI CCGG 1 cut(s) 878
BslI CCNNNNNNNGG 2 cut(s) 415, 901
BsmAI GTCTC 5 cut(s) 22, 173, 236, 1273, 1412
BsmBI CGTCTC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 1002
BsnI GGCC 3 cut(s) 5, 691, 1304
Bso31I GGTCTC 2 cut(s) 236, 1412
Bsp13I TCCGGA 1 cut(s) 877
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 3 cut(s) 382, 1066, 1387
Bsp19I CCATGG 2 cut(s) 6, 1422
BspACI CCGC 8 cut(s) 11, 172, 178, 352, 935, 1000, 1041, 1288
BspANI GGCC 3 cut(s) 5, 691, 1304
BspCNI CTCAG 5 cut(s) 85, 337, 892, 1287, 1315
BspEI TCCGGA 1 cut(s) 877
BspFNI CGCG 4 cut(s) 1043, 1275, 1277, 1476
BspHI TCATGA 1 cut(s) 385
BspMAI CTGCAG 1 cut(s) 272
BspMI ACCTGC 2 cut(s) 275, 1036
BspPI GGATC 1 cut(s) 390
BspTNI GGTCTC 2 cut(s) 236, 1412
BsrDI GCAATG 1 cut(s) 533
BsrGI TGTACA 1 cut(s) 708
BsrI ACTGG 2 cut(s) 29, 160
BssECI CCNNGG 3 cut(s) 6, 130, 1422
BssMI GATC 3 cut(s) 382, 1066, 1387
BssNI GRCGYC 1 cut(s) 274
BssT1I CCWWGG 2 cut(s) 6, 1422
Bst2UI CCWGG 2 cut(s) 315, 425
Bst4CI ACNGT 2 cut(s) 154, 1124
Bst6I CTCTTC 1 cut(s) 350
BstACI GRCGYC 1 cut(s) 274
BstAUI TGTACA 1 cut(s) 708
BstC8I GCNNGC 2 cut(s) 1183, 1187
BstDEI CTNAG 8 cut(s) 93, 324, 507, 900, 931, 1295, 1323, 1440
BstDSI CCRYGG 3 cut(s) 6, 130, 1422
BstF5I GGATG 5 cut(s) 319, 420, 629, 910, 1264
BstFNI CGCG 4 cut(s) 1043, 1275, 1277, 1476
BstHHI GCGC 4 cut(s) 779, 1045, 1277, 1476
BstKTI GATC 3 cut(s) 385, 1069, 1390
BstMAI GTCTC 5 cut(s) 22, 173, 236, 1273, 1412
BstMBI GATC 3 cut(s) 382, 1066, 1387
BstMCI CGRYCG 1 cut(s) 287
BstMWI GCNNNNNNNGC 3 cut(s) 229, 1083, 1178
BstNI CCWGG 2 cut(s) 315, 425
BstSCI CCNGG 2 cut(s) 313, 423
BstSFI CTRYAG 2 cut(s) 268, 1023
BstUI CGCG 4 cut(s) 1043, 1275, 1277, 1476
BstV1I GCAGC 6 cut(s) 186, 758, 974, 1061, 1120, 1176
BstV2I GAAGAC 4 cut(s) 123, 132, 727, 1232
BstX2I RGATCY 1 cut(s) 1387
BstYI RGATCY 1 cut(s) 1387
BsuRI GGCC 3 cut(s) 5, 691, 1304
BtgI CCRYGG 3 cut(s) 6, 130, 1422
BtgZI GCGATG 1 cut(s) 1147
BtsCI GGATG 5 cut(s) 319, 420, 629, 910, 1264
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 2 cut(s) 500, 622
BveI ACCTGC 2 cut(s) 275, 1036
Cac8I GCNNGC 2 cut(s) 1183, 1187
CaiI CAGNNNCTG 2 cut(s) 267, 965
CciI TCATGA 1 cut(s) 385
CfoI GCGC 4 cut(s) 779, 1045, 1277, 1476
Cfr13I GGNCC 3 cut(s) 690, 956, 1053
Csp6I GTAC 3 cut(s) 639, 709, 870
CviAII CATG 8 cut(s) 7, 55, 332, 386, 539, 1097, 1423, 1491
CviQI GTAC 3 cut(s) 639, 709, 870
DdeI CTNAG 8 cut(s) 93, 324, 507, 900, 931, 1295, 1323, 1440
DpnI GATC 3 cut(s) 384, 1068, 1389
DpnII GATC 3 cut(s) 382, 1066, 1387
DraI TTTAAA 1 cut(s) 1455
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 2 cut(s) 6, 1422
Eco31I GGTCTC 2 cut(s) 236, 1412
Eco47I GGWCC 2 cut(s) 956, 1053
Eco57I CTGAAG 2 cut(s) 756, 1304
EcoO109I RGGNCCY 1 cut(s) 690
EcoRII CCWGG 2 cut(s) 313, 423
EcoT14I CCWWGG 2 cut(s) 6, 1422
ErhI CCWWGG 2 cut(s) 6, 1422
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 8 cut(s) 10, 58, 335, 389, 542, 1100, 1426, 1494
FatI CATG 8 cut(s) 6, 54, 331, 385, 538, 1096, 1422, 1490
Fnu4HI GCNGC 8 cut(s) 175, 178, 747, 936, 963, 1075, 1134, 1190
FokI GGATG 5 cut(s) 306, 407, 636, 917, 1271
Fsp4HI GCNGC 8 cut(s) 175, 178, 747, 936, 963, 1075, 1134, 1190
FspBI CTAG 1 cut(s) 731
GlaI GCGC 4 cut(s) 778, 1044, 1276, 1475
GluI GCNGC 8 cut(s) 175, 178, 747, 936, 963, 1075, 1134, 1190
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 3 cut(s) 5, 691, 1304
HapII CCGG 1 cut(s) 878
HhaI GCGC 4 cut(s) 779, 1045, 1277, 1476
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 8 cut(s) 10, 58, 335, 389, 542, 1100, 1426, 1494
Hin6I GCGC 4 cut(s) 777, 1043, 1275, 1474
HinP1I GCGC 4 cut(s) 777, 1043, 1275, 1474
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HindIII AAGCTT 2 cut(s) 145, 1400
HinfI GANTC 5 cut(s) 89, 371, 814, 1328, 1394
HpaII CCGG 1 cut(s) 878
HphI GGTGA 4 cut(s) 25, 189, 289, 913
Hpy166II GTNNAC 2 cut(s) 709, 841
Hpy188I TCNGA 5 cut(s) 94, 327, 901, 1296, 1408
Hpy188III TCNNGA 7 cut(s) 282, 386, 416, 760, 878, 1051, 1391
Hpy8I GTNNAC 2 cut(s) 709, 841
Hpy99I CGWCG 2 cut(s) 125, 825
HpyAV CCTTC 4 cut(s) 200, 288, 560, 1340
HpyCH4III ACNGT 2 cut(s) 154, 1124
HpyCH4IV ACGT 4 cut(s) 60, 274, 469, 590
HpyCH4V TGCA 8 cut(s) 270, 538, 545, 644, 746, 1096, 1185, 1219
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 1083, 1178
HpyF3I CTNAG 8 cut(s) 93, 324, 507, 900, 931, 1295, 1323, 1440
HpySE526I ACGT 4 cut(s) 60, 274, 469, 590
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 8 cut(s) 10, 58, 335, 389, 542, 1100, 1426, 1494
HspAI GCGC 4 cut(s) 777, 1043, 1275, 1474
Kpn2I TCCGGA 1 cut(s) 877
Kzo9I GATC 3 cut(s) 382, 1066, 1387
LmnI GCTCC 3 cut(s) 229, 437, 880
Lsp1109I GCAGC 6 cut(s) 186, 758, 974, 1061, 1120, 1176
LweI GCATC 5 cut(s) 6, 532, 733, 877, 1426
MaeI CTAG 1 cut(s) 731
MaeII ACGT 4 cut(s) 60, 274, 469, 590
MaeIII GTNAC 2 cut(s) 586, 1018
MalI GATC 3 cut(s) 384, 1068, 1389
MboI GATC 3 cut(s) 382, 1066, 1387
MflI RGATCY 1 cut(s) 1387
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 512, 863, 948, 987, 994
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 83, 365, 808
MmeI TCCRAC 2 cut(s) 951, 1243
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 877
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 378, 551, 702, 1454
MslI CAYNNNNRTG 3 cut(s) 11, 336, 1007
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 965
MspI CCGG 1 cut(s) 878
MspR9I CCNGG 2 cut(s) 315, 425
Mva1269I GAATGC 1 cut(s) 1002
MvaI CCWGG 2 cut(s) 315, 425
MvnI CGCG 4 cut(s) 1043, 1275, 1277, 1476
MwoI GCNNNNNNNGC 3 cut(s) 229, 1083, 1178
NcoI CCATGG 2 cut(s) 6, 1422
NdeII GATC 3 cut(s) 382, 1066, 1387
NlaIII CATG 8 cut(s) 10, 58, 335, 389, 542, 1100, 1426, 1494
NmuCI GTSAC 2 cut(s) 586, 1018
PagI TCATGA 1 cut(s) 385
PaqCI CACCTGC 1 cut(s) 275
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 280
PctI GAATGC 1 cut(s) 1002
PfeI GAWTC 2 cut(s) 1328, 1394
PflFI GACNNNGTC 2 cut(s) 446, 726
PkrI GCNGC 8 cut(s) 176, 179, 748, 937, 964, 1076, 1135, 1191
PleI GAGTC 3 cut(s) 83, 365, 808
PpsI GAGTC 3 cut(s) 83, 365, 808
Psp6I CCWGG 2 cut(s) 313, 423
PspGI CCWGG 2 cut(s) 313, 423
PspPI GGNCC 3 cut(s) 690, 956, 1053
PstI CTGCAG 1 cut(s) 272
PstNI CAGNNNCTG 2 cut(s) 267, 965
PsuI RGATCY 1 cut(s) 1387
PsyI GACNNNGTC 2 cut(s) 446, 726
PvuII CAGCTG 1 cut(s) 965
RsaI GTAC 3 cut(s) 640, 710, 871
RsaNI GTAC 3 cut(s) 639, 709, 870
RseI CAYNNNNRTG 3 cut(s) 11, 336, 1007
SaqAI TTAA 4 cut(s) 378, 551, 702, 1454
SatI GCNGC 8 cut(s) 175, 178, 747, 936, 963, 1075, 1134, 1190
Sau3AI GATC 3 cut(s) 382, 1066, 1387
Sau96I GGNCC 3 cut(s) 690, 956, 1053
SchI GAGTC 3 cut(s) 83, 365, 808
ScrFI CCNGG 2 cut(s) 315, 425
SfaNI GCATC 5 cut(s) 6, 532, 733, 877, 1426
SfcI CTRYAG 2 cut(s) 268, 1023
SinI GGWCC 2 cut(s) 956, 1053
SmiMI CAYNNNNRTG 3 cut(s) 11, 336, 1007
Sse9I AATT 5 cut(s) 512, 863, 948, 987, 994
SsiI CCGC 8 cut(s) 11, 172, 178, 352, 935, 1000, 1041, 1288
SspMI CTAG 1 cut(s) 731
StyD4I CCNGG 2 cut(s) 313, 423
StyI CCWWGG 2 cut(s) 6, 1422
TaaI ACNGT 2 cut(s) 154, 1124
TaiI ACGT 4 cut(s) 63, 277, 472, 593
TaqI TCGA 5 cut(s) 51, 369, 558, 820, 1466
TaqII GACCGA 1 cut(s) 301
TasI AATT 5 cut(s) 512, 863, 948, 987, 994
TatI WGTACW 2 cut(s) 638, 708
TauI GCSGC 2 cut(s) 180, 938
TfiI GAWTC 2 cut(s) 1328, 1394
Tru1I TTAA 4 cut(s) 378, 551, 702, 1454
Tru9I TTAA 4 cut(s) 378, 551, 702, 1454
TscAI CASTG 2 cut(s) 507, 622
TseFI GTSAC 2 cut(s) 586, 1018
TseI GCWGC 6 cut(s) 174, 746, 962, 1074, 1133, 1189
Tsp45I GTSAC 2 cut(s) 586, 1018
TspDTI ATGAA 4 cut(s) 71, 182, 402, 782
TspGWI ACGGA 1 cut(s) 668
TspRI CASTG 2 cut(s) 507, 622
Tth111I GACNNNGTC 2 cut(s) 446, 726
VpaK11BI GGWCC 2 cut(s) 956, 1053
XapI RAATTY 1 cut(s) 994
XcmI CCANNNNNNNNNTGG 2 cut(s) 431, 1315
XspI CTAG 1 cut(s) 731
ZraI GACGTC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.