Rw6G008240

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000561
Physical Location & Seq
Reverse (-)
14017701 .. 14027234
9534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008240.1

Sequence Viewer

Length: 480 bp
ATGGCATCAACATTGCCGAAGCAATTCTGCTATTTGTATCTGCCATTCCATGATACAACTATAACCTTGGAAGATGAAAGAGGAGAAGAATATAGAACAATATTTCTTGGGGACAAGAGGAGACTGAGCGGTGGATGGAGAGGGTTTTGTGTTGCAAAGAAATTAGTTCTTGGCGACCTCTTAGTTTTCCATTTGGTCAGTCCTTTGAAGTTTAAGGTGTACAAAGTGGAACCTGATAGTCTAACTGAAGTAGATGCAGCTTTTATCCTCTTGAAATTGAGTCTCCCCACACTATTTGAAGAGTACCATCCAATGCCTCCTCCAAAAGATGCTTGCCAAGACAATATTCAAACGACAAGTCTGACAATAGATGCTATCCTGGAGCGCGTAGATGAAGATCACTCCGAGGATTACAGTGATCATCGTTTTGGCTCCAATCTACTATTTCATCCAGGACTTGTTACTCTTGAAGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

159

Amino Acids

18.21

Weight (kDa)

4.95

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 4 - 71 3.3e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 1 cut(s) 387
AciI CCGC 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 2 cut(s) 221, 305
AgsI TTSAA 5 cut(s) 208, 274, 299, 350, 470
AjnI CCWGG 2 cut(s) 378, 451
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw26I GTCTC 2 cut(s) 115, 287
ApeKI GCWGC 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 343, 375
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 269
BccI CCATC 2 cut(s) 129, 315
BciT130I CCWGG 2 cut(s) 380, 453
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 115, 287
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 2 cut(s) 380, 453
BmiI GGNNCC 2 cut(s) 231, 433
BmrFI CCNGG 2 cut(s) 380, 453
BmsI GCATC 4 cut(s) 14, 244, 319, 361
BpmI CTGGAG 1 cut(s) 401
BsaBI GATNNNNATC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 66, 405
Bse3DI GCAATG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 396
BseBI CCWGG 2 cut(s) 380, 453
BseDI CCNNGG 2 cut(s) 66, 405
BseGI GGATG 3 cut(s) 140, 307, 448
BseJI GATNNNNATC 1 cut(s) 396
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 116
BseRI GAGGAG 3 cut(s) 96, 133, 309
BseXI GCAGC 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 387
BslFI GGGAC 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 115, 287
BsmFI GGGAC 1 cut(s) 125
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 2 cut(s) 397, 418
BspACI CCGC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 231, 433
BsrBI CCGCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 66, 405
BssMI GATC 2 cut(s) 397, 418
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 2 cut(s) 380, 453
Bst4CI ACNGT 1 cut(s) 416
Bst6I CTCTTC 1 cut(s) 294
BstAUI TGTACA 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 125, 181
BstF5I GGATG 3 cut(s) 140, 307, 448
BstFNI CGCG 1 cut(s) 387
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 2 cut(s) 400, 421
BstMAI GTCTC 2 cut(s) 115, 287
BstMBI GATC 2 cut(s) 397, 418
BstNI CCWGG 2 cut(s) 380, 453
BstSCI CCNGG 2 cut(s) 378, 451
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 269
BtsCI GGATG 3 cut(s) 140, 307, 448
BtsIMutI CAGTG 1 cut(s) 421
Cac8I GCNNGC 1 cut(s) 334
CfoI GCGC 1 cut(s) 387
Csp6I GTAC 2 cut(s) 220, 304
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 1 cut(s) 50
CviJI RGCY 2 cut(s) 260, 432
CviKI_1 RGCY 2 cut(s) 260, 432
CviQI GTAC 2 cut(s) 220, 304
DdeI CTNAG 2 cut(s) 125, 181
DpnI GATC 2 cut(s) 399, 420
DpnII GATC 2 cut(s) 397, 418
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 267
EcoRII CCWGG 2 cut(s) 378, 451
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 1 cut(s) 53
FaiI YATR 3 cut(s) 51, 62, 93
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 49
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 3 cut(s) 147, 294, 435
Fsp4HI GCNGC 1 cut(s) 258
GlaI GCGC 1 cut(s) 386
GluI GCNGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 401
HhaI GCGC 1 cut(s) 387
Hin1II CATG 1 cut(s) 53
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HinfI GANTC 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 363, 406
Hpy188III TCNNGA 2 cut(s) 271, 467
Hpy8I GTNNAC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4V TGCA 2 cut(s) 155, 257
HpyF3I CTNAG 2 cut(s) 125, 181
Hsp92II CATG 1 cut(s) 53
HspAI GCGC 1 cut(s) 385
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 2 cut(s) 397, 418
LmnI GCTCC 2 cut(s) 382, 437
LpnPI CCDG 5 cut(s) 246, 365, 392, 438, 465
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 4 cut(s) 14, 244, 319, 361
MaeIII GTNAC 1 cut(s) 460
MalI GATC 2 cut(s) 399, 420
MbiI CCGCTC 1 cut(s) 129
MboI GATC 2 cut(s) 397, 418
MboII GAAGA 4 cut(s) 83, 98, 311, 407
MluCI AATT 3 cut(s) 23, 161, 275
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 8 cut(s) 74, 111, 134, 188, 278, 327, 330, 400
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 1 cut(s) 213
MspR9I CCNGG 2 cut(s) 380, 453
MvaI CCWGG 2 cut(s) 380, 453
MvnI CGCG 1 cut(s) 387
NdeII GATC 2 cut(s) 397, 418
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 2 cut(s) 231, 433
PdmI GAANNNNTTC 1 cut(s) 23
PfoI TCCNGGA 2 cut(s) 378, 451
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 378, 451
PspGI CCWGG 2 cut(s) 378, 451
PspN4I GGNNCC 2 cut(s) 231, 433
RsaI GTAC 2 cut(s) 221, 305
RsaNI GTAC 2 cut(s) 220, 304
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 397, 418
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 380, 453
SetI ASST 5 cut(s) 68, 180, 219, 235, 262
SfaNI GCATC 4 cut(s) 14, 244, 319, 361
Sse9I AATT 3 cut(s) 23, 161, 275
SsiI CCGC 1 cut(s) 129
SspI AATATT 2 cut(s) 102, 346
StyD4I CCNGG 2 cut(s) 378, 451
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 416
TasI AATT 3 cut(s) 23, 161, 275
TatI WGTACW 1 cut(s) 219
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 421
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 3 cut(s) 90, 408, 437
TspRI CASTG 1 cut(s) 421
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.