Rh6DG164000

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000561
Physical Location & Seq
Forward (+)
25197431 .. 25200167
2737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG164000.1

Sequence Viewer

Length: 474 bp
ATGATAAAACAGATCCAGATCTGGTTTCCTCTCTCTCTCATCGTCATAGCCATGGTGGAGAATTTCTTGACTGGAGGAGAATTTCTTGGGGAATTCATGAATCTGGAGGAGAATTTCTTCCAGTATTTCCAGGAAGACGAAGAGCACACGACCTTCCCCAAGCTCCCTGTCCCTACTGCTTCAACTCCATTTGACGATTTCACCCTTCATCCGGTGGAGCAGCACAGAGAGACATTGGAGGAGACCACCCAAAATGGGTTCAGGCCTTGGAAGTGGAAAAGTCCATTGAGTCCAATTCCCAAGAGAGGGTTGGGTGAGTGGGATGGAAGAGGTTGGCAACTAGTGAGCCACTGTAGGAGTCTTCTAGATCTTTACAGACATATGGTAGGGGGTGTTGCATGCTTACTGCACATTGAACTTCAAAGGCAATTTCCATTATGCTTTTCATTACATGCCGCATTTTGTTCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

157

Amino Acids

18.34

Weight (kDa)

5.43

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 456
AclWI GGATC 1 cut(s) 7
AcsI RAATTY 4 cut(s) 61, 80, 92, 112
AfiI CCNNNNNNNGG 4 cut(s) 211, 255, 305, 306
AgsI TTSAA 3 cut(s) 183, 416, 422
AhlI ACTAGT 1 cut(s) 340
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 224, 236
AlwI GGATC 1 cut(s) 7
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 4 cut(s) 61, 80, 92, 112
Asp700I GAANNNNTTC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 193, 326
BbsI GAAGAC 2 cut(s) 141, 353
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 224, 236
BcuI ACTAGT 1 cut(s) 340
BfaI CTAG 2 cut(s) 341, 365
BfmI CTRYAG 1 cut(s) 352
BglII AGATCT 2 cut(s) 18, 367
BisI GCNGC 2 cut(s) 221, 456
BlsI GCNGC 2 cut(s) 222, 457
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
BpiI GAAGAC 2 cut(s) 141, 353
BpmI CTGGAG 2 cut(s) 93, 125
BsaBI GATNNNNATC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 51, 266
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 4 cut(s) 211, 255, 305, 306
Bse1I ACTGG 2 cut(s) 76, 121
Bse8I GATNNNNATC 1 cut(s) 17
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 2 cut(s) 51, 266
BseGI GGATG 2 cut(s) 208, 328
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 4 cut(s) 211, 255, 305, 306
BseNI ACTGG 2 cut(s) 76, 121
BseRI GAGGAG 3 cut(s) 90, 122, 254
BseXI GCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 392
BshFI GGCC 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 4 cut(s) 211, 255, 305, 306
BsmAI GTCTC 2 cut(s) 224, 236
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 1 cut(s) 265
Bso31I GGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 3 cut(s) 12, 18, 367
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 1 cut(s) 456
BspANI GGCC 1 cut(s) 265
BspHI TCATGA 1 cut(s) 96
BspPI GGATC 1 cut(s) 7
BspQI GCTCTTC 1 cut(s) 135
BspTNI GGTCTC 1 cut(s) 236
BsrI ACTGG 2 cut(s) 76, 121
BssECI CCNNGG 2 cut(s) 51, 266
BssMI GATC 3 cut(s) 12, 18, 367
BssT1I CCWWGG 2 cut(s) 51, 266
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 2 cut(s) 135, 322
BstC8I GCNNGC 1 cut(s) 400
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 208, 328
BstKTI GATC 3 cut(s) 15, 21, 370
BstMAI GTCTC 2 cut(s) 224, 236
BstMBI GATC 3 cut(s) 12, 18, 367
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 2 cut(s) 402, 455
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 2 cut(s) 141, 353
BstX2I RGATCY 3 cut(s) 12, 18, 367
BstYI RGATCY 3 cut(s) 12, 18, 367
BsuRI GGCC 1 cut(s) 265
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 208, 328
BtsIMutI CAGTG 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 400
CciI TCATGA 1 cut(s) 96
CviAII CATG 4 cut(s) 52, 97, 399, 452
CviJI RGCY 4 cut(s) 50, 163, 265, 348
CviKI_1 RGCY 4 cut(s) 50, 163, 265, 348
DpnI GATC 3 cut(s) 14, 20, 369
DpnII GATC 3 cut(s) 12, 18, 367
Eam1104I CTCTTC 2 cut(s) 135, 322
EarI CTCTTC 2 cut(s) 135, 322
Eco130I CCWWGG 2 cut(s) 51, 266
Eco147I AGGCCT 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 51, 266
ErhI CCWWGG 2 cut(s) 51, 266
FaeI CATG 4 cut(s) 55, 100, 402, 455
FaiI YATR 8 cut(s) 47, 53, 98, 381, 383, 400, 439, 453
FaqI GGGAC 1 cut(s) 155
FatI CATG 4 cut(s) 51, 96, 398, 451
FauNDI CATATG 1 cut(s) 381
Fnu4HI GCNGC 2 cut(s) 221, 456
FokI GGATG 2 cut(s) 195, 335
Fsp4HI GCNGC 2 cut(s) 221, 456
FspBI CTAG 2 cut(s) 341, 365
GluI GCNGC 2 cut(s) 221, 456
GsuI CTGGAG 2 cut(s) 93, 125
HaeIII GGCC 1 cut(s) 265
HapII CCGG 1 cut(s) 212
Hin1II CATG 4 cut(s) 55, 100, 402, 455
HinfI GANTC 3 cut(s) 100, 289, 358
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 193, 326
Hpy188III TCNNGA 5 cut(s) 16, 67, 97, 104, 365
HpyAV CCTTC 2 cut(s) 163, 215
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4V TGCA 2 cut(s) 398, 409
Hsp92II CATG 4 cut(s) 55, 100, 402, 455
Kzo9I GATC 3 cut(s) 12, 18, 367
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 168, 217
Lsp1109I GCAGC 1 cut(s) 232
MaeI CTAG 2 cut(s) 341, 365
MalI GATC 3 cut(s) 14, 20, 369
MboI GATC 3 cut(s) 12, 18, 367
MboII GAAGA 5 cut(s) 109, 146, 152, 339, 353
MflI RGATCY 3 cut(s) 12, 18, 367
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 6 cut(s) 61, 80, 92, 112, 294, 428
MlyI GAGTC 2 cut(s) 298, 367
MnlI CCTC 6 cut(s) 39, 68, 100, 232, 299, 323
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 1 cut(s) 472
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 51
NdeI CATATG 1 cut(s) 381
NdeII GATC 3 cut(s) 12, 18, 367
NlaIII CATG 4 cut(s) 55, 100, 402, 455
NspI RCATGY 2 cut(s) 402, 455
PaeI GCATGC 1 cut(s) 402
PagI TCATGA 1 cut(s) 96
PceI AGGCCT 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 100
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 2 cut(s) 222, 457
PleI GAGTC 2 cut(s) 297, 366
PpsI GAGTC 2 cut(s) 297, 366
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PsuI RGATCY 3 cut(s) 12, 18, 367
RseI CAYNNNNRTG 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 472
SatI GCNGC 2 cut(s) 221, 456
Sau3AI GATC 3 cut(s) 12, 18, 367
SchI GAGTC 2 cut(s) 298, 367
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 147
SetI ASST 3 cut(s) 155, 165, 334
SfcI CTRYAG 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 340
SphI GCATGC 1 cut(s) 402
Sse9I AATT 6 cut(s) 61, 80, 92, 112, 294, 428
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 1 cut(s) 456
SspMI CTAG 2 cut(s) 341, 365
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 2 cut(s) 51, 266
TaaI ACNGT 1 cut(s) 353
TasI AATT 6 cut(s) 61, 80, 92, 112, 294, 428
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 472
Tru9I TTAA 1 cut(s) 472
TscAI CASTG 1 cut(s) 356
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 4 cut(s) 85, 113, 197, 435
TspRI CASTG 1 cut(s) 356
XapI RAATTY 4 cut(s) 61, 80, 92, 112
XbaI TCTAGA 1 cut(s) 364
XceI RCATGY 2 cut(s) 402, 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 2 cut(s) 341, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.