RchiOBHm_Chr2g0147541

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000561
Physical Location & Seq
Forward (+)
65105718 .. 65109736
4019 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51716

Sequence Viewer

Length: 600 bp
ATGGTGGAGAATTTCTTGACTGGAGGAGAATTTCTTGGGGAATTCATGAATTTGGAGGAGAATTTCTTCCAGTATTTCCAGGAAGATGAAGAGCACACGACCTTCCCCAAGCTCCCTGTCCCTACTACTTCAACTTCATTTGACGATTTCACCCTTCATCTGGTGGAGCAGCACAGAGAGACATTGGAGGAGACCACCCAAAATGGGTTCAGGCCTTGGAAGTGGAAAAGTCCATTGAATCCAATTCCCAAGAGAAAAAATGCTGGGGATCCACTGAGGAATGGAGGCTATAAGCGTAAGATCACGAAGTCCAACTATCATGAAAAATATTCTGTCAGAAACCAACTGCAACATATCCTGGCAAATCTAGGACCTGAATGTCCCTTCTTTTTGAAGTCTATGATACATTGTAATGTTGTCCATGGCTTTAGTTTGGTAAGTGTAAGTCCCAAAGAAATTTCTTGTGGAAGGTCGTTGCTATTACTAAAGTTGTGGCTGTTGGACAATGAAATTTTGTATGTTGATTCTTTGTTTTCTTCATTTGGCCTAATTGAGAAGGCACAACTTCTTACAGGTACATTCACTGATCCACCGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

199

Amino Acids

22.99

Weight (kDa)

5.82

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 378
AclWI GGATC 3 cut(s) 263, 276, 581
AcsI RAATTY 7 cut(s) 10, 29, 41, 49, 61, 456, 510
AfaI GTAC 1 cut(s) 577
AfiI CCNNNNNNNGG 2 cut(s) 160, 204
AgsI TTSAA 3 cut(s) 132, 238, 394
AjnI CCWGG 2 cut(s) 78, 357
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 173, 185
AlwI GGATC 3 cut(s) 263, 276, 581
AoxI GGCC 2 cut(s) 212, 544
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 7 cut(s) 10, 29, 41, 49, 61, 456, 510
Asp700I GAANNNNTTC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 371
BamHI GGATCC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 181
BciT130I CCWGG 2 cut(s) 80, 359
BcoDI GTCTC 2 cut(s) 173, 185
BfaI CTAG 1 cut(s) 368
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 2 cut(s) 80, 359
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 2 cut(s) 80, 359
BpmI CTGGAG 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 215, 421
BsaWI WCCGGW 1 cut(s) 592
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 204
Bse1I ACTGG 2 cut(s) 25, 70
BseBI CCWGG 2 cut(s) 80, 359
BseDI CCNNGG 2 cut(s) 215, 421
BseLI CCNNNNNNNGG 2 cut(s) 160, 204
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 2 cut(s) 25, 70
BseRI GAGGAG 3 cut(s) 39, 71, 203
BseXI GCAGC 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 263
BshFI GGCC 2 cut(s) 214, 546
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 593
BslFI GGGAC 3 cut(s) 104, 366, 432
BslI CCNNNNNNNGG 2 cut(s) 160, 204
BsmAI GTCTC 2 cut(s) 173, 185
BsmFI GGGAC 3 cut(s) 104, 366, 432
BsnI GGCC 2 cut(s) 214, 546
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 268, 300, 586
Bsp19I CCATGG 1 cut(s) 421
BspANI GGCC 2 cut(s) 214, 546
BspCNI CTCAG 1 cut(s) 267
BspHI TCATGA 2 cut(s) 45, 319
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 3 cut(s) 263, 276, 581
BspQI GCTCTTC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 185
BsrI ACTGG 2 cut(s) 25, 70
BssECI CCNNGG 2 cut(s) 215, 421
BssMI GATC 3 cut(s) 268, 300, 586
BssT1I CCWWGG 2 cut(s) 215, 421
Bst2UI CCWGG 2 cut(s) 80, 359
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 275
BstDSI CCRYGG 1 cut(s) 421
BstKTI GATC 3 cut(s) 271, 303, 589
BstMAI GTCTC 2 cut(s) 173, 185
BstMBI GATC 3 cut(s) 268, 300, 586
BstNI CCWGG 2 cut(s) 80, 359
BstSCI CCNGG 2 cut(s) 78, 357
BstV1I GCAGC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 2 cut(s) 214, 546
BtgI CCRYGG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 272, 582
CciI TCATGA 2 cut(s) 45, 319
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 576
CviAII CATG 3 cut(s) 46, 320, 422
CviJI RGCY 6 cut(s) 112, 214, 288, 426, 496, 546
CviKI_1 RGCY 6 cut(s) 112, 214, 288, 426, 496, 546
CviQI GTAC 1 cut(s) 576
DdeI CTNAG 1 cut(s) 275
DpnI GATC 3 cut(s) 270, 302, 588
DpnII GATC 3 cut(s) 268, 300, 586
DrdI GACNNNNNNGTC 1 cut(s) 378
DseDI GACNNNNNNGTC 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 215, 421
Eco147I AGGCCT 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 78, 357
EcoT14I CCWWGG 2 cut(s) 215, 421
ErhI CCWWGG 2 cut(s) 215, 421
FaeI CATG 3 cut(s) 49, 323, 425
FaiI YATR 7 cut(s) 47, 291, 321, 354, 401, 423, 519
FaqI GGGAC 3 cut(s) 104, 366, 432
FatI CATG 3 cut(s) 45, 319, 421
Fnu4HI GCNGC 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 1 cut(s) 368
GluI GCNGC 1 cut(s) 170
GsaI CCCAGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 214, 546
HapII CCGG 1 cut(s) 593
Hin1II CATG 3 cut(s) 49, 323, 425
HinfI GANTC 2 cut(s) 238, 524
HpaII CCGG 1 cut(s) 593
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 4 cut(s) 16, 46, 304, 320
HpyAV CCTTC 5 cut(s) 112, 164, 394, 462, 550
HpyCH4V TGCA 1 cut(s) 349
HpyF3I CTNAG 1 cut(s) 275
Hsp92II CATG 3 cut(s) 49, 323, 425
Kzo9I GATC 3 cut(s) 268, 300, 586
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 117, 166
Lsp1109I GCAGC 1 cut(s) 181
MaeI CTAG 1 cut(s) 368
MalI GATC 3 cut(s) 270, 302, 588
MboI GATC 3 cut(s) 268, 300, 586
MboII GAAGA 4 cut(s) 58, 95, 101, 528
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 9 cut(s) 10, 29, 41, 49, 61, 243, 456, 510, 549
MmeI TCCRAC 2 cut(s) 336, 480
MnlI CCTC 5 cut(s) 17, 49, 181, 270, 278
MroXI GAANNNNTTC 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 411
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 2 cut(s) 80, 359
MvaI CCWGG 2 cut(s) 80, 359
NcoI CCATGG 1 cut(s) 421
NdeII GATC 3 cut(s) 268, 300, 586
NlaIII CATG 3 cut(s) 49, 323, 425
NlaIV GGNNCC 1 cut(s) 270
PagI TCATGA 2 cut(s) 45, 319
PceI AGGCCT 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 2 cut(s) 238, 524
PfoI TCCNGGA 1 cut(s) 78
PkrI GCNGC 1 cut(s) 171
PpuMI RGGWCCY 1 cut(s) 371
Psp5II RGGWCCY 1 cut(s) 371
Psp6I CCWGG 2 cut(s) 78, 357
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 2 cut(s) 78, 357
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 371
PspPPI RGGWCCY 1 cut(s) 371
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 1 cut(s) 577
RsaNI GTAC 1 cut(s) 576
RseI CAYNNNNRTG 1 cut(s) 411
SapI GCTCTTC 1 cut(s) 84
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 3 cut(s) 268, 300, 586
Sau96I GGNCC 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 80, 359
SduI GDGCHC 1 cut(s) 96
SetI ASST 5 cut(s) 104, 114, 376, 473, 577
SinI GGWCC 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 411
Sse9I AATT 9 cut(s) 10, 29, 41, 49, 61, 243, 456, 510, 549
SseBI AGGCCT 1 cut(s) 214
SspI AATATT 1 cut(s) 329
SspMI CTAG 1 cut(s) 368
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 2 cut(s) 78, 357
StyI CCWWGG 2 cut(s) 215, 421
TasI AATT 9 cut(s) 10, 29, 41, 49, 61, 243, 456, 510, 549
TfiI GAWTC 2 cut(s) 238, 524
TscAI CASTG 2 cut(s) 279, 589
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 8 cut(s) 34, 62, 102, 126, 146, 336, 522, 528
TspRI CASTG 2 cut(s) 279, 589
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 7 cut(s) 10, 29, 41, 49, 61, 456, 510
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.