Rorug05G0579000

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000561
Physical Location & Seq
Forward (+)
77469608 .. 77470438
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0579000.1

Sequence Viewer

Length: 585 bp
ATGGCCAGAATACCTGCCATCTTTGCTACACGGTTCATAGTTCTCTCCCTTCTTTCTTCCTTTGCCCTAATTCTGGTCCAGGGAGAAGATGATCACGATTTCGTGAGAGCCATGGACCGCGATCTCTTGGGGCTCAAGAAAGAAAAGCTCAGCCACTTCAAGTTGTACTGGCATGACATTGTGAGCGGCAAAAACCCAAGCTCAATCGGAGTGGTGAAATCACCCGTTAACTCATCAACGCACTTCGGATTCGTGAACATGATCGACAATCCCCTCACCGAAAAGCCGGAGCTGAGCTCGAAGCTGCTGGGGAGGGCTCAAGGGTTCTACGCATCAGCTTCACAACAGGAGTTCGGGCTGTTGATGGCCATGAACTTTCATTTAATTCAGGGCAAGTACAACGGGAGCACCATAACTGTGCTGGGGAGGAACCCGGTATTCAACAAGGTGAGGGAAATGCCGGTGATCGGAGGAAGTGGACTTTTCAGGTTTGCAAGAGGTTATGTTGAAGCAAGAACTCACACATTCACTCCGAGCACCCGAGATGCCATCGTTGAGTACAATGCCTATGTGCTCCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

194

Amino Acids

21.72

Weight (kDa)

9.48

Isoelectric Point (pI)

30.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 51 - 191 7.3e-56 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccBSI CCGCTC 1 cut(s) 186
AccII CGCG 1 cut(s) 120
AciI CCGC 2 cut(s) 118, 186
AcoI YGGCCR 2 cut(s) 3, 366
AfaI GTAC 3 cut(s) 167, 398, 560
AfiI CCNNNNNNNGG 2 cut(s) 73, 467
AgsI TTSAA 3 cut(s) 160, 442, 509
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 6 cut(s) 148, 201, 292, 297, 304, 338
AluI AGCT 6 cut(s) 148, 201, 292, 297, 304, 338
Alw21I GWGCWC 4 cut(s) 299, 410, 539, 576
Ama87I CYCGRG 1 cut(s) 540
AoxI GGCC 2 cut(s) 3, 366
ApeKI GCWGC 1 cut(s) 304
AspS9I GGNCC 2 cut(s) 76, 115
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 5 cut(s) 213, 226, 268, 460, 475
AvaI CYCGRG 1 cut(s) 540
AvaII GGWCC 2 cut(s) 76, 115
BalI TGGCCA 2 cut(s) 5, 368
BanII GRGCYC 3 cut(s) 135, 299, 319
Bbv12I GWGCWC 4 cut(s) 299, 410, 539, 576
BbvI GCAGC 1 cut(s) 291
BccI CCATC 3 cut(s) 26, 358, 557
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 2 cut(s) 187, 305
BlpI GCTNAGC 2 cut(s) 149, 293
BlsI GCNGC 2 cut(s) 188, 306
Bme1390I CCNGG 2 cut(s) 80, 434
Bme18I GGWCC 2 cut(s) 76, 115
BmeT110I CYCGRG 1 cut(s) 540
BmgT120I GGNCC 2 cut(s) 76, 115
BmiI GGNNCC 1 cut(s) 431
BmrFI CCNGG 2 cut(s) 80, 434
BmsI GCATC 2 cut(s) 341, 535
BplI GAGNNNNNCTC 2 cut(s) 281, 313
Bpu1102I GCTNAGC 2 cut(s) 149, 293
BpuEI CTTGAG 2 cut(s) 119, 303
BpuMI CCSGG 1 cut(s) 434
BsaJI CCNNGG 2 cut(s) 79, 111
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 467
Bse118I RCCGGY 1 cut(s) 460
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 79, 111
BseLI CCNNNNNNNGG 2 cut(s) 73, 467
BseMII CTCAG 2 cut(s) 163, 284
BseNI ACTGG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 291
BseYI CCCAGC 2 cut(s) 307, 421
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 2 cut(s) 5, 368
BsiHKAI GWGCWC 4 cut(s) 299, 410, 539, 576
BsiHKCI CYCGRG 1 cut(s) 540
BsiSI CCGG 3 cut(s) 287, 434, 461
BslI CCNNNNNNNGG 2 cut(s) 73, 467
BsnI GGCC 2 cut(s) 5, 368
BsoBI CYCGRG 1 cut(s) 540
Bsp1286I GDGCHC 6 cut(s) 135, 299, 319, 410, 539, 576
Bsp143I GATC 4 cut(s) 91, 121, 261, 465
Bsp1720I GCTNAGC 2 cut(s) 149, 293
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 2 cut(s) 118, 186
BspANI GGCC 2 cut(s) 5, 368
BspCNI CTCAG 2 cut(s) 162, 285
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 431
BspMI ACCTGC 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 460
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 79, 111
BssMI GATC 4 cut(s) 91, 121, 261, 465
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 33, 418
BstDEI CTNAG 2 cut(s) 149, 293
BstDSI CCRYGG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 4 cut(s) 94, 124, 264, 468
BstMBI GATC 4 cut(s) 91, 121, 261, 465
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 78, 432
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 291
BsuRI GGCC 2 cut(s) 5, 368
BtgI CCRYGG 1 cut(s) 111
BveI ACCTGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 460
Cfr13I GGNCC 2 cut(s) 76, 115
Csp6I GTAC 3 cut(s) 166, 397, 559
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 4 cut(s) 112, 173, 259, 370
CviQI GTAC 3 cut(s) 166, 397, 559
DdeI CTNAG 2 cut(s) 149, 293
DpnI GATC 4 cut(s) 93, 123, 263, 467
DpnII GATC 4 cut(s) 91, 121, 261, 465
EaeI YGGCCR 2 cut(s) 3, 366
Ecl136II GAGCTC 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 3 cut(s) 135, 299, 319
Eco47I GGWCC 2 cut(s) 76, 115
Eco53kI GAGCTC 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 3 cut(s) 135, 299, 319
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 4 cut(s) 115, 176, 262, 373
FaiI YATR 8 cut(s) 38, 113, 174, 260, 371, 413, 504, 570
FatI CATG 4 cut(s) 111, 172, 258, 369
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 187, 305
FriOI GRGCYC 3 cut(s) 135, 299, 319
Fsp4HI GCNGC 2 cut(s) 187, 305
GluI GCNGC 2 cut(s) 187, 305
GsaI CCCAGC 2 cut(s) 311, 425
HaeIII GGCC 2 cut(s) 5, 368
HapII CCGG 3 cut(s) 287, 434, 461
Hin1II CATG 4 cut(s) 115, 176, 262, 373
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 1 cut(s) 249
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 3 cut(s) 287, 434, 461
HphI GGTGA 5 cut(s) 213, 226, 268, 460, 475
Hpy166II GTNNAC 3 cut(s) 229, 256, 479
Hpy188I TCNGA 4 cut(s) 209, 248, 470, 534
Hpy188III TCNNGA 4 cut(s) 95, 103, 136, 253
Hpy8I GTNNAC 3 cut(s) 229, 256, 479
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 2 cut(s) 33, 418
HpyCH4V TGCA 1 cut(s) 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 149, 293
Hsp92II CATG 4 cut(s) 115, 176, 262, 373
Ksp22I TGATCA 1 cut(s) 91
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 4 cut(s) 91, 121, 261, 465
LmnI GCTCC 3 cut(s) 289, 405, 579
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 2 cut(s) 341, 535
MalI GATC 4 cut(s) 93, 123, 263, 467
MbiI CCGCTC 1 cut(s) 186
MboI GATC 4 cut(s) 91, 121, 261, 465
MboII GAAGA 2 cut(s) 48, 98
MhlI GDGCHC 6 cut(s) 135, 299, 319, 410, 539, 576
MlsI TGGCCA 2 cut(s) 5, 368
MluCI AATT 2 cut(s) 69, 384
MluNI TGGCCA 2 cut(s) 5, 368
MnlI CCTC 6 cut(s) 284, 306, 420, 444, 464, 491
Mox20I TGGCCA 2 cut(s) 5, 368
MscI TGGCCA 2 cut(s) 5, 368
MseI TTAA 2 cut(s) 228, 383
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 2 cut(s) 5, 368
MspI CCGG 3 cut(s) 287, 434, 461
MspR9I CCNGG 2 cut(s) 80, 434
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 434
NcoI CCATGG 1 cut(s) 111
NdeII GATC 4 cut(s) 91, 121, 261, 465
NlaIII CATG 4 cut(s) 115, 176, 262, 373
NlaIV GGNNCC 1 cut(s) 431
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 2 cut(s) 188, 306
Psp124BI GAGCTC 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 78
PspFI CCCAGC 2 cut(s) 307, 421
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 431
PspPI GGNCC 2 cut(s) 76, 115
RsaI GTAC 3 cut(s) 167, 398, 560
RsaNI GTAC 3 cut(s) 166, 397, 559
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 299
SaqAI TTAA 2 cut(s) 228, 383
SatI GCNGC 2 cut(s) 187, 305
Sau3AI GATC 4 cut(s) 91, 121, 261, 465
Sau96I GGNCC 2 cut(s) 76, 115
ScrFI CCNGG 2 cut(s) 80, 434
SduI GDGCHC 6 cut(s) 135, 299, 319, 410, 539, 576
SfaNI GCATC 2 cut(s) 341, 535
SinI GGWCC 2 cut(s) 76, 115
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 134, 318
SmoI CTYRAG 2 cut(s) 134, 318
Sse9I AATT 2 cut(s) 69, 384
SsiI CCGC 2 cut(s) 118, 186
SstI GAGCTC 1 cut(s) 299
StyD4I CCNGG 2 cut(s) 78, 432
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 33, 418
TaqI TCGA 2 cut(s) 264, 299
TasI AATT 2 cut(s) 69, 384
TatI WGTACW 3 cut(s) 165, 396, 558
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 2 cut(s) 228, 383
Tru9I TTAA 2 cut(s) 228, 383
TseI GCWGC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 25, 368, 386
VpaK11BI GGWCC 2 cut(s) 76, 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.