Rorug05G0578400

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000561
Physical Location & Seq
Forward (+)
77424232 .. 77428489
4258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0578400.1

Sequence Viewer

Length: 903 bp
ATGGACTTCGGCGGTGGTCGCAAGCGAGGCAGGCACGAAGCGGCGTCGTTTAACGGCAATGGCGGCTTCAAGAAATCCAAGCCAGAAATGGAGTCCTTTTCAACTGGTATAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACTTCTGGTTGCCCTTTTGGAGAGGGATGTCACTTCTTGCATTATGTTCCTGGTGGCGTCAAAGCTGTATCTCAGATGACTGGTAGCAACCCAACTCATCCACCTCCTCCCAGACATTCAGCAGCCCCACCATCATTTCCAGATGGTTCTTCTCCACCAGCTGTCAAGACACGGTTATGCAACAAATACAACACAGCTGAAGGTTGCAAGTTTGGAGATAAATGTCATTTTGCTCACGGTGAATATGAGCTTGGGAGGCCCACTGCTCAATCTTATGATGATCCTCGTGGTGGGGGAGCAATGCATGGAAGGATGGGAGGTCGGAATGAGCCTCCCCCACCAAGTCATGGAGGTGCAGGTAGATTTGGGGCCATTGCCAATGCTAAGATTAGTGTAGATGCTTCCCTCGCCGGAGCCATAATTGGAAAAAATGGTCTGAACTCAAAGCAGATTTGTCGTGTGACTGGAGCAAAGCTTTCTATAAGAGAGCATGAGTCAGACCCGAAGCTGAGGAACATTGAGCTTGAGGGTACTTTTGATCAGATTAAAGATGCCAGTGCCATGGTTCAAGATATTATTGTGAACGTGAGCTCAGCTGCTGGACCTCACATGAGAAATCCTTCTATGGGGGCTTCTCAAGGAAGTAGTAACTTCAAGACTAAGCTTTGCGAGAATTTTACTAAAGGTCAATGCACATTTGGTGACAGGTGCCACTTTGCACATGGGGCTGAAGAATTGCGCAGGGGAGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

300

Amino Acids

31.7

Weight (kDa)

9.31

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 105 - 130 2.3e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
KH_1 PF00013 178 - 240 3.8e-12 KH domain
zf-CCCH PF00642 267 - 291 2.6e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4 PF18044 270 - 290 1.6e-06 CCCH-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 887
Acc36I ACCTGC 1 cut(s) 494
AccB1I GGYRCC 1 cut(s) 855
AccB7I CCANNNNNTGG 1 cut(s) 494
AciI CCGC 3 cut(s) 12, 41, 63
AclWI GGATC 1 cut(s) 422
AcsI RAATTY 1 cut(s) 820
AcuI CTGAAG 2 cut(s) 366, 897
AcyI GRCGYC 2 cut(s) 44, 204
AfaI GTAC 1 cut(s) 679
AfiI CCNNNNNNNGG 3 cut(s) 437, 494, 773
AgsI TTSAA 4 cut(s) 70, 102, 716, 802
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
Alw21I GWGCWC 1 cut(s) 740
AlwI GGATC 1 cut(s) 422
AlwNI CAGNNNCTG 1 cut(s) 746
AoxI GGCC 2 cut(s) 404, 516
ApeKI GCWGC 2 cut(s) 269, 743
ApoI RAATTY 1 cut(s) 820
Asp700I GAANNNNTTC 1 cut(s) 766
AspLEI GCGC 1 cut(s) 888
AspS9I GGNCC 3 cut(s) 405, 516, 749
AsuHPI GGTGA 2 cut(s) 398, 860
AvaII GGWCC 1 cut(s) 749
BanI GGYRCC 1 cut(s) 855
BanII GRGCYC 1 cut(s) 740
BauI CACGAG 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 740
BbvCI CCTCAGC 1 cut(s) 656
BbvI GCAGC 2 cut(s) 281, 730
BccI CCATC 3 cut(s) 284, 286, 454
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 584, 618
BciT130I CCWGG 1 cut(s) 198
BclI TGATCA 1 cut(s) 685
BfuAI ACCTGC 1 cut(s) 494
BisI GCNGC 4 cut(s) 42, 64, 270, 744
BlpI GCTNAGC 1 cut(s) 739
BlsI GCNGC 4 cut(s) 43, 65, 271, 745
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 749
BmgT120I GGNCC 3 cut(s) 405, 516, 749
BmiI GGNNCC 3 cut(s) 517, 562, 857
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 535, 688
BpmI CTGGAG 1 cut(s) 633
Bpu10I CCTNAGC 1 cut(s) 656
Bpu1102I GCTNAGC 1 cut(s) 739
BpuEI CTTGAG 2 cut(s) 692, 768
BsaHI GRCGYC 2 cut(s) 44, 204
BsaJI CCNNGG 1 cut(s) 708
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 494, 773
Bse1I ACTGG 4 cut(s) 109, 232, 616, 702
Bse3DI GCAATG 3 cut(s) 64, 453, 519
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 708
BseGI GGATG 4 cut(s) 179, 244, 465, 903
BseLI CCNNNNNNNGG 3 cut(s) 437, 494, 773
BseMI GCAATG 3 cut(s) 64, 453, 519
BseMII CTCAG 3 cut(s) 233, 647, 753
BseNI ACTGG 4 cut(s) 109, 232, 616, 702
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 281, 730
BsgI GTGCAG 1 cut(s) 522
BshFI GGCC 2 cut(s) 406, 518
BshNI GGYRCC 1 cut(s) 855
BsiHKAI GWGCWC 1 cut(s) 740
BsiSI CCGG 1 cut(s) 558
BslI CCNNNNNNNGG 3 cut(s) 437, 494, 773
BsnI GGCC 2 cut(s) 406, 518
Bsp1286I GDGCHC 1 cut(s) 740
Bsp143I GATC 2 cut(s) 427, 685
Bsp1720I GCTNAGC 1 cut(s) 739
Bsp19I CCATGG 1 cut(s) 708
BspACI CCGC 3 cut(s) 12, 41, 63
BspANI GGCC 2 cut(s) 406, 518
BspCNI CTCAG 3 cut(s) 232, 648, 752
BspLI GGNNCC 3 cut(s) 517, 562, 857
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 1 cut(s) 422
BspT107I GGYRCC 1 cut(s) 855
BsrDI GCAATG 3 cut(s) 64, 453, 519
BsrI ACTGG 4 cut(s) 109, 232, 616, 702
BssECI CCNNGG 1 cut(s) 708
BssMI GATC 2 cut(s) 427, 685
BssNI GRCGYC 2 cut(s) 44, 204
BssSI CACGAG 1 cut(s) 432
BssT1I CCWWGG 1 cut(s) 708
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 321, 386
BstACI GRCGYC 2 cut(s) 44, 204
BstC8I GCNNGC 2 cut(s) 23, 32
BstDEI CTNAG 5 cut(s) 219, 531, 656, 739, 807
BstDSI CCRYGG 1 cut(s) 708
BstF5I GGATG 4 cut(s) 179, 244, 465, 903
BstHHI GCGC 1 cut(s) 888
BstKTI GATC 2 cut(s) 430, 688
BstMBI GATC 2 cut(s) 427, 685
BstMWI GCNNNNNNNGC 7 cut(s) 18, 27, 31, 63, 403, 554, 872
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 281, 730
BstXI CCANNNNNNTGG 1 cut(s) 709
BsuRI GGCC 2 cut(s) 406, 518
BtgI CCRYGG 1 cut(s) 708
BtsCI GGATG 4 cut(s) 179, 244, 465, 903
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 408, 709
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 2 cut(s) 23, 32
CaiI CAGNNNCTG 1 cut(s) 746
CfoI GCGC 1 cut(s) 888
Cfr13I GGNCC 3 cut(s) 405, 516, 749
CseI GACGC 2 cut(s) 33, 193
Csp6I GTAC 1 cut(s) 678
CviAII CATG 7 cut(s) 129, 452, 494, 638, 709, 757, 869
CviQI GTAC 1 cut(s) 678
DdeI CTNAG 5 cut(s) 219, 531, 656, 739, 807
DpnI GATC 2 cut(s) 429, 687
DpnII GATC 2 cut(s) 427, 685
Ecl136II GAGCTC 1 cut(s) 738
Eco130I CCWWGG 1 cut(s) 708
Eco24I GRGCYC 1 cut(s) 740
Eco47I GGWCC 1 cut(s) 749
Eco53kI GAGCTC 1 cut(s) 738
Eco57I CTGAAG 2 cut(s) 366, 897
EcoICRI GAGCTC 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 708
EcoT22I ATGCAT 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 740
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 7 cut(s) 132, 455, 497, 641, 712, 760, 872
FatI CATG 7 cut(s) 128, 451, 493, 637, 708, 756, 868
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 4 cut(s) 42, 64, 270, 744
FokI GGATG 3 cut(s) 186, 231, 472
FriOI GRGCYC 1 cut(s) 740
Fsp4HI GCNGC 4 cut(s) 42, 64, 270, 744
FspI TGCGCA 1 cut(s) 887
GlaI GCGC 1 cut(s) 887
GluI GCNGC 4 cut(s) 42, 64, 270, 744
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 2 cut(s) 406, 518
HapII CCGG 1 cut(s) 558
HgaI GACGC 2 cut(s) 33, 193
HhaI GCGC 1 cut(s) 888
Hin1I GRCGYC 2 cut(s) 44, 204
Hin1II CATG 7 cut(s) 132, 455, 497, 641, 712, 760, 872
Hin6I GCGC 1 cut(s) 886
HinP1I GCGC 1 cut(s) 886
HindIII AAGCTT 2 cut(s) 620, 809
HinfI GANTC 2 cut(s) 92, 641
HpaII CCGG 1 cut(s) 558
HphI GGTGA 2 cut(s) 398, 860
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 5 cut(s) 222, 471, 585, 646, 690
Hpy188III TCNNGA 5 cut(s) 70, 287, 313, 716, 802
Hpy8I GTNNAC 1 cut(s) 730
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 341, 450, 777
HpyCH4III ACNGT 2 cut(s) 321, 386
HpyCH4IV ACGT 1 cut(s) 732
HpyCH4V TGCA 8 cut(s) 132, 187, 327, 354, 451, 503, 840, 866
HpyF10VI GCNNNNNNNGC 7 cut(s) 18, 27, 31, 63, 403, 554, 872
HpyF3I CTNAG 5 cut(s) 219, 531, 656, 739, 807
HpySE526I ACGT 1 cut(s) 732
Hsp92I GRCGYC 2 cut(s) 44, 204
Hsp92II CATG 7 cut(s) 132, 455, 497, 641, 712, 760, 872
HspAI GCGC 1 cut(s) 886
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 2 cut(s) 427, 685
LmnI GCTCC 3 cut(s) 443, 560, 614
Lsp1109I GCAGC 2 cut(s) 281, 730
LweI GCATC 2 cut(s) 535, 688
MaeII ACGT 1 cut(s) 732
MaeIII GTNAC 4 cut(s) 176, 607, 794, 848
MalI GATC 2 cut(s) 429, 687
MboI GATC 2 cut(s) 427, 685
MboII GAAGA 2 cut(s) 288, 890
MhlI GDGCHC 1 cut(s) 740
MluCI AATT 3 cut(s) 567, 820, 881
MlyI GAGTC 2 cut(s) 101, 650
MmeI TCCRAC 1 cut(s) 449
Mph1103I ATGCAT 1 cut(s) 453
MroXI GAANNNNTTC 1 cut(s) 766
MseI TTAA 2 cut(s) 51, 693
MslI CAYNNNNRTG 2 cut(s) 322, 498
MspA1I CMGCKG 3 cut(s) 308, 344, 743
MspI CCGG 1 cut(s) 558
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 7 cut(s) 18, 27, 31, 63, 403, 554, 872
NcoI CCATGG 1 cut(s) 708
NdeII GATC 2 cut(s) 427, 685
NlaIII CATG 7 cut(s) 132, 455, 497, 641, 712, 760, 872
NlaIV GGNNCC 3 cut(s) 517, 562, 857
NmuCI GTSAC 3 cut(s) 176, 607, 848
NsbI TGCGCA 1 cut(s) 887
NsiI ATGCAT 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 766
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 4 cut(s) 43, 65, 271, 745
PleI GAGTC 2 cut(s) 100, 649
PpsI GAGTC 2 cut(s) 100, 649
Psp124BI GAGCTC 1 cut(s) 740
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 3 cut(s) 517, 562, 857
PspPI GGNCC 3 cut(s) 405, 516, 749
PstNI CAGNNNCTG 1 cut(s) 746
PvuII CAGCTG 3 cut(s) 308, 344, 743
RsaI GTAC 1 cut(s) 679
RsaNI GTAC 1 cut(s) 678
RseI CAYNNNNRTG 2 cut(s) 322, 498
SacI GAGCTC 1 cut(s) 740
SaqAI TTAA 2 cut(s) 51, 693
SatI GCNGC 4 cut(s) 42, 64, 270, 744
Sau3AI GATC 2 cut(s) 427, 685
Sau96I GGNCC 3 cut(s) 405, 516, 749
SchI GAGTC 2 cut(s) 101, 650
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 740
SfaNI GCATC 2 cut(s) 535, 688
SinI GGWCC 1 cut(s) 749
SmiMI CAYNNNNRTG 2 cut(s) 322, 498
SmlI CTYRAG 2 cut(s) 671, 783
SmoI CTYRAG 2 cut(s) 671, 783
Sse9I AATT 3 cut(s) 567, 820, 881
SsiI CCGC 3 cut(s) 12, 41, 63
SstI GAGCTC 1 cut(s) 740
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 2 cut(s) 321, 386
TaiI ACGT 1 cut(s) 735
TaqI TCGA 1 cut(s) 122
TasI AATT 3 cut(s) 567, 820, 881
TauI GCSGC 2 cut(s) 44, 66
Tru1I TTAA 2 cut(s) 51, 693
Tru9I TTAA 2 cut(s) 51, 693
TscAI CASTG 2 cut(s) 415, 709
TseFI GTSAC 3 cut(s) 176, 607, 848
TseI GCWGC 2 cut(s) 269, 743
Tsp45I GTSAC 3 cut(s) 176, 607, 848
TspRI CASTG 2 cut(s) 415, 709
Van91I CCANNNNNTGG 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 749
XapI RAATTY 1 cut(s) 820
XcmI CCANNNNNNNNNTGG 2 cut(s) 85, 866
XmnI GAANNNNTTC 1 cut(s) 766
Zsp2I ATGCAT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.