Rmu_sc0007933.1_g000012

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007933.1
OG0000561
Physical Location & Seq
Reverse (-)
35972 .. 41190
5219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007933.1_g000012.1.cds

Sequence Viewer

Length: 789 bp
atggtggagaatttcttgactggaggagaatttcttggggaattcatgaatctggaggagaatttcttccagtatttccaggaagacgaagagcacactaccttccccaagctccctgtccctactacttcaactccatttgacgatttcacccttcatctggtggagcagcacagagagacattggaggagaccacccaaaatgggttcaggccttggaagtggaaaagtccattgagtccaattcccaagagaaaaaatgctggggatccactgaggaatggaggctataagcgtaagatcacgaagtccaactatcatgaaaaatcttatgtcagaaaccaactgcaacatatcctgggaaatctaggacctgaatgtccgttctttttgaagtctatgatacattgtaatgttgtccatggctttagtttggtaagtgtaattgatatattgaatggcgatatgcatcatgaccacatcaaaactgggtatcaagaaggtgggcttgctgcaatacatgggatcaagaaggagcgatttgataaacggaggatcagattctttgaaaacgtaaaggaccttgcatgcctgatgagttgtcatctgtatgttaacggaaacactgtgactgccgcgggaacttcacttgagcatgtaaaggtggtcagaatggtcgttgaaaggtgttatgttgaaaatgtgaatcctgcaactattgtcagtcgcttaaaaatgaggaaagatatgcttaatgtggagagaaggcttcaagctttgttgatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

262

Amino Acids

30.34

Weight (kDa)

8.52

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 378
AccII CGCG 1 cut(s) 638
AciI CCGC 2 cut(s) 636, 638
AclWI GGATC 4 cut(s) 263, 276, 533, 563
AcsI RAATTY 4 cut(s) 10, 29, 41, 61
AfiI CCNNNNNNNGG 2 cut(s) 160, 204
AgsI TTSAA 7 cut(s) 132, 394, 457, 569, 683, 698, 773
AjnI CCWGG 2 cut(s) 78, 357
AluBI AGCT 2 cut(s) 112, 776
AluI AGCT 2 cut(s) 112, 776
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 173, 185
AlwI GGATC 4 cut(s) 263, 276, 533, 563
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 169, 512
ApoI RAATTY 4 cut(s) 10, 29, 41, 61
Asp700I GAANNNNTTC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 371, 580
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 2 cut(s) 371, 580
BamHI GGATCC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 181, 499
BciT130I CCWGG 2 cut(s) 80, 359
BcoDI GTCTC 2 cut(s) 173, 185
BfaI CTAG 1 cut(s) 368
BisI GCNGC 3 cut(s) 170, 513, 636
BlsI GCNGC 3 cut(s) 171, 514, 637
Bme1390I CCNGG 2 cut(s) 80, 359
Bme18I GGWCC 2 cut(s) 371, 580
BmgT120I GGNCC 2 cut(s) 371, 580
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 2 cut(s) 80, 359
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 1 cut(s) 478
BmuI ACTGGG 1 cut(s) 498
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 2 cut(s) 42, 74
BpuEI CTTGAG 1 cut(s) 671
BsaBI GATNNNNATC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 4 cut(s) 215, 358, 421, 636
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 204
Bse1I ACTGG 3 cut(s) 25, 70, 493
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 2 cut(s) 80, 359
BseDI CCNNGG 4 cut(s) 215, 358, 421, 636
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 2 cut(s) 160, 204
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 3 cut(s) 25, 70, 493
BseRI GAGGAG 3 cut(s) 39, 71, 203
BseXI GCAGC 2 cut(s) 181, 499
BseYI CCCAGC 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 638
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 96
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 160, 204
BsmAI GTCTC 2 cut(s) 173, 185
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 4 cut(s) 268, 300, 525, 555
Bsp19I CCATGG 1 cut(s) 421
BspACI CCGC 2 cut(s) 636, 638
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 267
BspFNI CGCG 1 cut(s) 638
BspHI TCATGA 3 cut(s) 45, 319, 472
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 4 cut(s) 263, 276, 533, 563
BspQI GCTCTTC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 185
BsrI ACTGG 3 cut(s) 25, 70, 493
BssECI CCNNGG 4 cut(s) 215, 358, 421, 636
BssMI GATC 4 cut(s) 268, 300, 525, 555
BssT1I CCWWGG 2 cut(s) 215, 421
Bst2UI CCWGG 2 cut(s) 80, 359
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 510, 589
BstDEI CTNAG 1 cut(s) 275
BstDSI CCRYGG 2 cut(s) 421, 636
BstFNI CGCG 1 cut(s) 638
BstKTI GATC 4 cut(s) 271, 303, 528, 558
BstMAI GTCTC 2 cut(s) 173, 185
BstMBI GATC 4 cut(s) 268, 300, 525, 555
BstNI CCWGG 2 cut(s) 80, 359
BstNSI RCATGY 2 cut(s) 591, 659
BstSCI CCNGG 2 cut(s) 78, 357
BstUI CGCG 1 cut(s) 638
BstV1I GCAGC 2 cut(s) 181, 499
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 1 cut(s) 214
BtgI CCRYGG 2 cut(s) 421, 636
BtsIMutI CAGTG 2 cut(s) 272, 624
Cac8I GCNNGC 2 cut(s) 510, 589
CciI TCATGA 3 cut(s) 45, 319, 472
Cfr13I GGNCC 2 cut(s) 371, 580
Cfr42I CCGCGG 1 cut(s) 639
CviAII CATG 7 cut(s) 46, 320, 422, 473, 521, 588, 656
CviJI RGCY 7 cut(s) 112, 214, 288, 426, 508, 769, 776
CviKI_1 RGCY 7 cut(s) 112, 214, 288, 426, 508, 769, 776
DdeI CTNAG 1 cut(s) 275
DpnI GATC 4 cut(s) 270, 302, 527, 557
DpnII GATC 4 cut(s) 268, 300, 525, 555
DrdI GACNNNNNNGTC 1 cut(s) 378
DseDI GACNNNNNNGTC 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 215, 421
Eco147I AGGCCT 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 2 cut(s) 371, 580
EcoO109I RGGNCCY 2 cut(s) 371, 580
EcoRI GAATTC 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 78, 357
EcoT14I CCWWGG 2 cut(s) 215, 421
EcoT22I ATGCAT 1 cut(s) 471
ErhI CCWWGG 2 cut(s) 215, 421
FaeI CATG 7 cut(s) 49, 323, 425, 476, 524, 591, 659
FalI AAGNNNNNCTT 4 cut(s) 492, 524, 735, 767
FaqI GGGAC 1 cut(s) 104
FatI CATG 7 cut(s) 45, 319, 421, 472, 520, 587, 655
FauI CCCGC 1 cut(s) 631
Fnu4HI GCNGC 3 cut(s) 170, 513, 636
Fsp4HI GCNGC 3 cut(s) 170, 513, 636
FspBI CTAG 1 cut(s) 368
GluI GCNGC 3 cut(s) 170, 513, 636
GsaI CCCAGC 1 cut(s) 267
GsuI CTGGAG 2 cut(s) 42, 74
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 7 cut(s) 49, 323, 425, 476, 524, 591, 659
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 774
HinfI GANTC 4 cut(s) 49, 238, 561, 706
HpaI GTTAAC 1 cut(s) 616
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 3 cut(s) 338, 560, 671
Hpy188III TCNNGA 8 cut(s) 16, 46, 53, 304, 320, 473, 497, 529
Hpy8I GTNNAC 1 cut(s) 616
HpyAV CCTTC 5 cut(s) 112, 164, 494, 526, 759
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 5 cut(s) 349, 469, 515, 587, 713
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 7 cut(s) 49, 323, 425, 476, 524, 591, 659
KspAI GTTAAC 1 cut(s) 616
KspI CCGCGG 1 cut(s) 639
Kzo9I GATC 4 cut(s) 268, 300, 525, 555
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 3 cut(s) 117, 166, 535
Lsp1109I GCAGC 2 cut(s) 181, 499
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 368
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 1 cut(s) 628
MalI GATC 4 cut(s) 270, 302, 527, 557
MboI GATC 4 cut(s) 268, 300, 525, 555
MboII GAAGA 3 cut(s) 58, 95, 101
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 6 cut(s) 10, 29, 41, 61, 243, 444
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 7 cut(s) 17, 49, 181, 270, 278, 546, 732
Mph1103I ATGCAT 1 cut(s) 471
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 3 cut(s) 615, 731, 753
MslI CAYNNNNRTG 2 cut(s) 411, 609
MspA1I CMGCKG 1 cut(s) 638
MspR9I CCNGG 2 cut(s) 80, 359
MvaI CCWGG 2 cut(s) 80, 359
MvnI CGCG 1 cut(s) 638
NcoI CCATGG 1 cut(s) 421
NdeII GATC 4 cut(s) 268, 300, 525, 555
NlaIII CATG 7 cut(s) 49, 323, 425, 476, 524, 591, 659
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 628
NsiI ATGCAT 1 cut(s) 471
NspI RCATGY 2 cut(s) 591, 659
PaeI GCATGC 1 cut(s) 591
PagI TCATGA 3 cut(s) 45, 319, 472
PceI AGGCCT 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 3 cut(s) 49, 561, 706
PfoI TCCNGGA 1 cut(s) 78
PkrI GCNGC 3 cut(s) 171, 514, 637
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PpuMI RGGWCCY 2 cut(s) 371, 580
Psp5II RGGWCCY 2 cut(s) 371, 580
Psp6I CCWGG 2 cut(s) 78, 357
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 2 cut(s) 78, 357
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 2 cut(s) 371, 580
PspPPI RGGWCCY 2 cut(s) 371, 580
PsuI RGATCY 1 cut(s) 268
RseI CAYNNNNRTG 2 cut(s) 411, 609
SacII CCGCGG 1 cut(s) 639
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 3 cut(s) 615, 731, 753
SatI GCNGC 3 cut(s) 170, 513, 636
Sau3AI GATC 4 cut(s) 268, 300, 525, 555
Sau96I GGNCC 2 cut(s) 371, 580
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 80, 359
SduI GDGCHC 1 cut(s) 96
SetI ASST 9 cut(s) 104, 114, 376, 505, 576, 585, 666, 689, 778
SfaNI GCATC 1 cut(s) 478
Sfr303I CCGCGG 1 cut(s) 639
SgrBI CCGCGG 1 cut(s) 639
SinI GGWCC 2 cut(s) 371, 580
SmiMI CAYNNNNRTG 2 cut(s) 411, 609
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
SphI GCATGC 1 cut(s) 591
Sse9I AATT 6 cut(s) 10, 29, 41, 61, 243, 444
SseBI AGGCCT 1 cut(s) 214
SsiI CCGC 2 cut(s) 636, 638
SspMI CTAG 1 cut(s) 368
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 2 cut(s) 78, 357
StyI CCWWGG 2 cut(s) 215, 421
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 1 cut(s) 576
TasI AATT 6 cut(s) 10, 29, 41, 61, 243, 444
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 3 cut(s) 49, 561, 706
Tru1I TTAA 3 cut(s) 615, 731, 753
Tru9I TTAA 3 cut(s) 615, 731, 753
TscAI CASTG 2 cut(s) 279, 631
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 2 cut(s) 169, 512
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 4 cut(s) 34, 62, 146, 336
TspGWI ACGGA 3 cut(s) 372, 565, 633
TspRI CASTG 2 cut(s) 279, 631
VpaK11BI GGWCC 2 cut(s) 371, 580
XapI RAATTY 4 cut(s) 10, 29, 41, 61
XceI RCATGY 2 cut(s) 591, 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 485
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 368
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.