Rh6BG088200

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000561
Physical Location & Seq
Reverse (-)
13774139 .. 13776582
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG088200.1

Sequence Viewer

Length: 930 bp
ATGTTTATATTGTTTCGAATTAACGGGACAATAGTTGACTGGGTAAATTTGATGTTTTTTGAACAGAAAAATGCTGGGGATCCTCTGAGGAATGGAGGCTATAAGCGTAAGATCACCAAGTCCAACTATCATGAAAAGTCTTCTGTCAGAAACCAACTGCAACATATCCTGGCAAATCTAGGACCTGAATGTCCCTTCTTTTTGAAGTCTATGATACATTGTAATGTTGTCCATGGCTTTAGTTTGACATTGCCGAAGCAATTCTGCTATTTGTATCTGCCATTCCATGATACAACTATAACCTTGGAAGATGAAAGAGGAGAGGAATATAGAACAATATTTCTTGGGGACAAGAGGAGACTAAGCGGTGGATGGAGAGGGTTTTGTGTTGCAAAGAAATTAGTTCTTGGCGACCTCTTAGTTTTCCATTTGGTCAGTCCTTTGAAGTTTAAGGTATGCTTCTATTGTTGCTTGGGCATAATTTTCTGTATTTTTTACAATAACTGCTATTGGTTCTTGATACCCCACCAATTTGATGCGACTTTGTCCACATTAATTGGAATTTCTTGCTTGGATGAAGAGCTTGTTCTTTGGCCTTCGCATCTGCATTTTGACTCTTGTAGTGTAGTACACAATCATATATACACAATATTGCAGGTGTACAAAGTGGAACCTGATAGTCTAACTGAAGTAGATGCAGCTTTTATCCTCTTGAAATTGAGTCTCCCCACACTATTTGATGATGCAGAAGAGTACCATCCAATGCCTCCTCCAAAAGATGCTTGCCAAGACAATATTCAAACGACAAGTCTGACAATAGATGCTATTCTGGAGCGTGTAGATGAAGATCACTCCGAGGTTTACAGTGATCATCGTTTTGGCTCCAATCTACTATTTCATCCAGGACTTGTTACTCTTGAAGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

309

Amino Acids

35.65

Weight (kDa)

5.71

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 67 - 157 3.6e-14 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000561)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06320 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330 FvH4_2g06330
malus_domestica MD05G1077500.v1.1 MD10G1092700.v1.1
prunus_persica Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1 Prupe.8G122500_v2.0.a1
pyrus_communis pycom10g07620
rosa_chinensis RchiOBHm_Chr2g0147541 RchiOBHm_Chr2g0168211 RchiOBHm_Chr6g0256791 RchiOBHm_Chr6g0258071 RchiOBHm_Chr6g0258081 RchiOBHm_Chr6g0258121 RchiOBHm_Chr6g0258181 RchiOBHm_Chr6g0258201 RchiOBHm_Chr6g0258211
rosa_laevigata RLG00000014639 RLG00000014642 RLG00000014647
rosa_multiflora Rmu_sc0006058.1_g000005 Rmu_sc0007933.1_g000012
rosa_roxburghii Rroxscaffold_7G00205330 Rroxscaffold_7G00205340 Rroxscaffold_7G00208080 Rroxscaffold_7G00208100 Rroxscaffold_7G00208160
rosa_rugosa Rorug05G0578100 Rorug05G0578200 Rorug05G0578300 Rorug05G0578400 Rorug05G0578400 Rorug05G0578500 Rorug05G0578600 Rorug05G0578700 Rorug05G0578800 Rorug05G0578900 Rorug05G0579000 Rorug05G0579300 Rorug05G0579300 Rorug05G0579400
rosa_samantha Rh2BG613900 Rh4BG034900 Rh6AG096700 Rh6AG097000 Rh6AG097100 Rh6AG097300 Rh6BG087600 Rh6BG088200 Rh6BG088300 Rh6CG083700 Rh6CG083900 Rh6CG084000 Rh6CG084200 Rh6DG079500 Rh6DG080000 Rh6DG080200 Rh6DG080400 Rh6DG164000 Rh7BG391100 Rh7CG434700 Rh7CG467700
rosa_wichuraiana Rw0G021370 Rw0G021380 Rw6G008220 Rw6G008240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 646
AasI GACNNNNNNGTC 1 cut(s) 189
Acc36I ACCTGC 1 cut(s) 646
AciI CCGC 1 cut(s) 366
AclWI GGATC 2 cut(s) 74, 87
AcsI RAATTY 2 cut(s) 46, 561
AcuI CTGAAG 1 cut(s) 708
AfaI GTAC 3 cut(s) 630, 662, 755
AgsI TTSAA 6 cut(s) 62, 205, 445, 715, 800, 920
AjnI CCWGG 2 cut(s) 168, 901
AjuI GAANNNNNNNTTGG 2 cut(s) 780, 812
AluBI AGCT 2 cut(s) 583, 701
AluI AGCT 2 cut(s) 583, 701
Alw26I GTCTC 2 cut(s) 352, 728
AlwI GGATC 2 cut(s) 74, 87
AoxI GGCC 1 cut(s) 593
ApeKI GCWGC 1 cut(s) 698
ApoI RAATTY 2 cut(s) 46, 561
ArsI GACNNNNNNTTYG 2 cut(s) 793, 825
AseI ATTAAT 1 cut(s) 554
Asp700I GAANNNNTTC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 106
AsuII TTCGAA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 182
BamHI GGATCC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 710
BccI CCATC 2 cut(s) 366, 765
BciT130I CCWGG 2 cut(s) 170, 903
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 2 cut(s) 352, 728
BfaI CTAG 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 646
BisI GCNGC 1 cut(s) 699
BlsI GCNGC 1 cut(s) 700
Bme1390I CCNGG 2 cut(s) 170, 903
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 3 cut(s) 81, 672, 883
BmrFI CCNGG 2 cut(s) 170, 903
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 6 cut(s) 526, 610, 685, 733, 769, 811
BmuI ACTGGG 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 851
Bpu14I TTCGAA 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 846
BsaJI CCNNGG 3 cut(s) 232, 303, 855
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 248
Bse8I GATNNNNATC 1 cut(s) 846
BseBI CCWGG 2 cut(s) 170, 903
BseDI CCNNGG 3 cut(s) 232, 303, 855
BseGI GGATG 4 cut(s) 377, 580, 757, 898
BseJI GATNNNNATC 1 cut(s) 846
BseMI GCAATG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 3 cut(s) 333, 370, 759
BseXI GCAGC 1 cut(s) 710
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 595
BslFI GGGAC 3 cut(s) 40, 177, 362
BsmAI GTCTC 2 cut(s) 352, 728
BsmFI GGGAC 3 cut(s) 40, 177, 362
BsnI GGCC 1 cut(s) 595
Bsp119I TTCGAA 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 660
Bsp143I GATC 4 cut(s) 79, 111, 847, 868
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 1 cut(s) 366
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 1 cut(s) 78
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 81, 672, 883
BspMI ACCTGC 1 cut(s) 646
BspPI GGATC 2 cut(s) 74, 87
BspQI GCTCTTC 1 cut(s) 573
BspT104I TTCGAA 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 3 cut(s) 232, 303, 855
BssMI GATC 4 cut(s) 79, 111, 847, 868
BssT1I CCWWGG 2 cut(s) 232, 303
Bst2UI CCWGG 2 cut(s) 170, 903
Bst4CI ACNGT 1 cut(s) 866
Bst6I CTCTTC 2 cut(s) 573, 744
BstAUI TGTACA 1 cut(s) 660
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 784
BstDEI CTNAG 3 cut(s) 86, 362, 418
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 4 cut(s) 377, 580, 757, 898
BstKTI GATC 4 cut(s) 82, 114, 850, 871
BstMAI GTCTC 2 cut(s) 352, 728
BstMBI GATC 4 cut(s) 79, 111, 847, 868
BstNI CCWGG 2 cut(s) 170, 903
BstSCI CCNGG 2 cut(s) 168, 901
BstV1I GCAGC 1 cut(s) 710
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 595
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 4 cut(s) 377, 580, 757, 898
BtsIMutI CAGTG 1 cut(s) 871
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 1 cut(s) 784
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 3 cut(s) 629, 661, 754
CspCI CAANNNNNGTGG 4 cut(s) 538, 573, 718, 753
CviAII CATG 3 cut(s) 131, 233, 287
CviJI RGCY 6 cut(s) 99, 237, 583, 595, 701, 882
CviKI_1 RGCY 6 cut(s) 99, 237, 583, 595, 701, 882
CviQI GTAC 3 cut(s) 629, 661, 754
DdeI CTNAG 3 cut(s) 86, 362, 418
DpnI GATC 4 cut(s) 81, 113, 849, 870
DpnII GATC 4 cut(s) 79, 111, 847, 868
DrdI GACNNNNNNGTC 1 cut(s) 189
DseDI GACNNNNNNGTC 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 573, 744
EarI CTCTTC 2 cut(s) 573, 744
Eco130I CCWWGG 2 cut(s) 232, 303
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 708
EcoO109I RGGNCCY 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 168, 901
EcoT14I CCWWGG 2 cut(s) 232, 303
ErhI CCWWGG 2 cut(s) 232, 303
FaeI CATG 3 cut(s) 134, 236, 290
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FaqI GGGAC 3 cut(s) 40, 177, 362
FatI CATG 3 cut(s) 130, 232, 286
FbaI TGATCA 1 cut(s) 868
Fnu4HI GCNGC 1 cut(s) 699
FokI GGATG 4 cut(s) 384, 587, 744, 885
Fsp4HI GCNGC 1 cut(s) 699
FspBI CTAG 1 cut(s) 179
GluI GCNGC 1 cut(s) 699
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 851
HaeIII GGCC 1 cut(s) 595
Hin1II CATG 3 cut(s) 134, 236, 290
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 2 cut(s) 614, 721
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 5 cut(s) 37, 549, 631, 661, 862
Hpy188I TCNGA 4 cut(s) 87, 149, 813, 856
Hpy188III TCNNGA 5 cut(s) 131, 517, 712, 830, 917
Hpy8I GTNNAC 5 cut(s) 37, 549, 631, 661, 862
HpyAV CCTTC 2 cut(s) 205, 606
HpyCH4III ACNGT 1 cut(s) 866
HpyCH4V TGCA 6 cut(s) 160, 392, 607, 655, 698, 746
HpyF3I CTNAG 3 cut(s) 86, 362, 418
Hsp92II CATG 3 cut(s) 134, 236, 290
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 4 cut(s) 79, 111, 847, 868
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 2 cut(s) 832, 887
Lsp1109I GCAGC 1 cut(s) 710
LweI GCATC 6 cut(s) 526, 610, 685, 733, 769, 811
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 910
MalI GATC 4 cut(s) 81, 113, 849, 870
MboI GATC 4 cut(s) 79, 111, 847, 868
MboII GAAGA 5 cut(s) 132, 320, 590, 761, 857
MflI RGATCY 1 cut(s) 79
MluCI AATT 9 cut(s) 18, 46, 260, 398, 480, 530, 555, 561, 716
MlyI GAGTC 2 cut(s) 608, 730
MmeI TCCRAC 1 cut(s) 147
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 3 cut(s) 21, 450, 554
MslI CAYNNNNRTG 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 170, 903
MvaI CCWGG 2 cut(s) 170, 903
NcoI CCATGG 1 cut(s) 232
NdeII GATC 4 cut(s) 79, 111, 847, 868
NlaIII CATG 3 cut(s) 134, 236, 290
NlaIV GGNNCC 3 cut(s) 81, 672, 883
NspV TTCGAA 1 cut(s) 16
PagI TCATGA 1 cut(s) 130
PaqCI CACCTGC 1 cut(s) 646
PciSI GCTCTTC 1 cut(s) 573
PdmI GAANNNNTTC 1 cut(s) 260
PflFI GACNNNGTC 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 901
PkrI GCNGC 1 cut(s) 700
PleI GAGTC 2 cut(s) 608, 729
PpsI GAGTC 2 cut(s) 608, 729
PpuMI RGGWCCY 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 182
Psp6I CCWGG 2 cut(s) 168, 901
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 2 cut(s) 168, 901
PspN4I GGNNCC 3 cut(s) 81, 672, 883
PspPI GGNCC 1 cut(s) 182
PspPPI RGGWCCY 1 cut(s) 182
PsuI RGATCY 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 544
RsaI GTAC 3 cut(s) 630, 662, 755
RsaNI GTAC 3 cut(s) 629, 661, 754
RseI CAYNNNNRTG 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 3 cut(s) 21, 450, 554
SatI GCNGC 1 cut(s) 699
Sau3AI GATC 4 cut(s) 79, 111, 847, 868
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 2 cut(s) 608, 730
ScrFI CCNGG 2 cut(s) 170, 903
SetI ASST 9 cut(s) 187, 305, 417, 456, 585, 660, 676, 703, 861
SfaNI GCATC 6 cut(s) 526, 610, 685, 733, 769, 811
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 9 cut(s) 18, 46, 260, 398, 480, 530, 555, 561, 716
SsiI CCGC 1 cut(s) 366
SspI AATATT 3 cut(s) 339, 651, 796
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 168, 901
StyI CCWWGG 2 cut(s) 232, 303
TaaI ACNGT 1 cut(s) 866
TaqI TCGA 1 cut(s) 16
TasI AATT 9 cut(s) 18, 46, 260, 398, 480, 530, 555, 561, 716
TatI WGTACW 2 cut(s) 628, 660
Tru1I TTAA 3 cut(s) 21, 450, 554
Tru9I TTAA 3 cut(s) 21, 450, 554
TscAI CASTG 1 cut(s) 871
TseI GCWGC 1 cut(s) 698
TspDTI ATGAA 5 cut(s) 147, 327, 591, 858, 887
TspRI CASTG 1 cut(s) 871
Tth111I GACNNNGTC 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 182
VspI ATTAAT 1 cut(s) 554
XapI RAATTY 2 cut(s) 46, 561
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.