Rroxscaffold_7G00205350

Eukaryotic protein of unknown function (DUF829)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
54902603 .. 54905922
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205350.1

Sequence Viewer

Length: 1242 bp
ATGTCGGCCGGTGCTGCTTCTGATCGCGGCGGCGGGATCTACTGGGGTCGAAAGGAGGTCTCCGATTCCAAAGGCATCGCCGTCATCTTCGCCTGGGTTTCGATTCCCGAGCGACACTTGAAGAGCTACGTCAATCTGTATGCGTCTCTGGGTTGGAACTCCCTCGTCTGCCATGCCCATTTTCTCCACGCATTCTATCCCGAAAGGGCGATGTCGTCGGCATTTGATATCCTGAATGAGCTTGTAGAGGAGCTAAGGATTAAGCCGTGTCCTGTAGTTTTTGTGGGTCTTTCTGCTGGTACTAAAGCTTGTATGTACAAAGTTTTTCAGATTATTGAAGGAATTAGTGAAGGCCAGCTATATCCGGGTGAATACCGATTGGTGAGGAAATGTATTACCGGACACATCTATGATTCCGGCCCGGTTGATTTTACAACTGACCTTGGTACACACTATGCTCTACACCCAACCATTCTAAAGATGCCTGGTTCATCAAAATTGGTTTCGTGGGTTGCTAAAGGCATTGCTTCTGGTTTGGATGCTCTTTATCTTACACGATTTGAATCCCAGTGGGCTGAGTATTGGCAGGCTCTGTATTCTTCAGTTAATTTGGGTGCTCCATTTCTCATTTTGTGCTCTGATAAAGACGAACTCGCTCCCTATCATGTTGTCTGCACTTTCAGTCAACGTTTACAAGAGTTTGGAGGTGACGTCAAGCTTGTGAAATTGAATGGTTCCCCTCACCTAGGTCATTATAAGAATTATCCAATACAATATAGGTCTTCTGTTACTCATTTTCTTGGGAAGGCAGCTTTTATTTTTTCTCAAAGAATTCAAAAGCTTGAATGGGAAATGACTAGCATGGAAGGTATGCATGATGAGATATCTGAACTAATCTGTGACCTCCAGAAAGCAGCCGTTAACTCTAATGAGAGCCTCAGAAGAGTTGCAGTTGAGCCAAGCGATCACTTCTTCTTGCCAAGTTCAGCAGAGAATCAAAATGGTACGGACTCTGGGTCATTACAAGATGAACAGAAAGAAAGATCGCTCTGTCTGTCTAAGCCTCCAAGCCTTAGTGCACATAGTGTACTTGGCAAAGTCCTATTTGATGTTTGTGTCCCTAAGAACGTTGATGGTTGGGATATCAAATTCTGTGGGTCTTTGAATGGGCAGCCATTTGCTTCTGCTCGTAGGAATTCACCTCCTCGTGGTATCAAAGGTCTCCGTCGCTCAAGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

413

Amino Acids

45.91

Weight (kDa)

7.98

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 27 - 101 4.8e-06 Eukaryotic protein of unknown function (DUF829)
DUF829 PF05705 132 - 380 5.8e-26 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
AatII GACGTC 1 cut(s) 714
AccII CGCG 1 cut(s) 27
AciI CCGC 3 cut(s) 27, 30, 33
AclI AACGTT 2 cut(s) 688, 1128
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 3 cut(s) 831, 1148, 1195
AcuI CTGAAG 1 cut(s) 585
AcyI GRCGYC 1 cut(s) 711
AdeI CACNNNGTG 1 cut(s) 1085
AfaI GTAC 5 cut(s) 301, 317, 448, 1006, 1089
AfiI CCNNNNNNNGG 2 cut(s) 746, 1208
AgsI TTSAA 7 cut(s) 121, 338, 563, 730, 836, 845, 1165
AhdI GACNNNNNGTC 1 cut(s) 1015
AjnI CCWGG 2 cut(s) 92, 484
AluBI AGCT 8 cut(s) 126, 241, 253, 308, 358, 718, 812, 841
AluI AGCT 8 cut(s) 126, 241, 253, 308, 358, 718, 812, 841
Alw21I GWGCWC 3 cut(s) 619, 638, 1081
Alw26I GTCTC 3 cut(s) 64, 150, 1226
Alw44I GTGCAC 1 cut(s) 1077
AlwI GGATC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 592
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 3 cut(s) 6, 352, 418
ApaLI GTGCAC 1 cut(s) 1077
ApeKI GCWGC 4 cut(s) 14, 809, 914, 1171
ApoI RAATTY 3 cut(s) 831, 1148, 1195
AspA2I CCTAGG 1 cut(s) 745
AspS9I GGNCC 1 cut(s) 419
AsuC2I CCSGG 2 cut(s) 366, 422
AsuHPI GGTGA 5 cut(s) 380, 394, 719, 734, 1191
AvaI CYCGRG 1 cut(s) 107
AvrII CCTAGG 1 cut(s) 745
BaeGI GKGCMC 1 cut(s) 1081
BauI CACGAG 1 cut(s) 1206
BbsI GAAGAC 1 cut(s) 774
Bbv12I GWGCWC 3 cut(s) 619, 638, 1081
BbvI GCAGC 3 cut(s) 821, 926, 1183
BccI CCATC 1 cut(s) 1127
BceAI ACGGC 3 cut(s) 65, 250, 902
BciT130I CCWGG 2 cut(s) 94, 486
BcnI CCSGG 2 cut(s) 366, 422
BcoDI GTCTC 3 cut(s) 64, 150, 1226
BfaI CTAG 2 cut(s) 746, 858
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 6 cut(s) 15, 28, 31, 810, 915, 1172
BlnI CCTAGG 1 cut(s) 745
BlsI GCNGC 6 cut(s) 16, 29, 32, 811, 916, 1173
Bme1390I CCNGG 4 cut(s) 94, 366, 422, 486
BmeRI GACNNNNNGTC 1 cut(s) 1015
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 736
BmrFI CCNGG 4 cut(s) 94, 366, 422, 486
BmrI ACTGGG 2 cut(s) 52, 562
BmsI GCATC 3 cut(s) 84, 471, 529
BmuI ACTGGG 2 cut(s) 52, 562
BpiI GAAGAC 1 cut(s) 774
BpmI CTGGAG 1 cut(s) 890
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 1216
BpuMI CCSGG 2 cut(s) 366, 422
BsaBI GATNNNNATC 1 cut(s) 562
BsaHI GRCGYC 1 cut(s) 711
BsaI GGTCTC 2 cut(s) 64, 1226
BsaJI CCNNGG 3 cut(s) 93, 442, 745
BsaWI WCCGGW 1 cut(s) 398
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bsc4I CCNNNNNNNGG 2 cut(s) 746, 1208
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 2 cut(s) 47, 568
Bse3DI GCAATG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 562
BseBI CCWGG 2 cut(s) 94, 486
BseDI CCNNGG 3 cut(s) 93, 442, 745
BseGI GGATG 1 cut(s) 544
BseJI GATNNNNATC 1 cut(s) 562
BseLI CCNNNNNNNGG 2 cut(s) 746, 1208
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 2 cut(s) 567, 952
BseNI ACTGG 2 cut(s) 47, 568
BseRI GAGGAG 2 cut(s) 263, 1194
BseSI GKGCMC 1 cut(s) 1081
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 3 cut(s) 821, 926, 1183
BsgI GTGCAG 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 27
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 8, 354, 420
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 3 cut(s) 619, 638, 1081
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 5 cut(s) 9, 365, 399, 417, 422
BslFI GGGAC 1 cut(s) 1103
BslI CCNNNNNNNGG 2 cut(s) 746, 1208
BsmAI GTCTC 3 cut(s) 64, 150, 1226
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 1103
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 3 cut(s) 8, 354, 420
Bso31I GGTCTC 2 cut(s) 64, 1226
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 3 cut(s) 619, 638, 1081
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 4 cut(s) 22, 36, 964, 1043
BspACI CCGC 3 cut(s) 27, 30, 33
BspANI GGCC 3 cut(s) 8, 354, 420
BspCNI CTCAG 2 cut(s) 568, 951
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 736
BspPI GGATC 1 cut(s) 44
BspQI GCTCTTC 1 cut(s) 116
BspTNI GGTCTC 2 cut(s) 64, 1226
BsrDI GCAATG 1 cut(s) 522
BsrFI RCCGGY 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 2 cut(s) 47, 568
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 3 cut(s) 93, 442, 745
BssMI GATC 4 cut(s) 22, 36, 964, 1043
BssNI GRCGYC 1 cut(s) 711
BssSI CACGAG 1 cut(s) 1206
BssT1I CCWWGG 2 cut(s) 442, 745
Bst2BI CACGAG 1 cut(s) 1206
Bst2UI CCWGG 2 cut(s) 94, 486
Bst6I CTCTTC 2 cut(s) 116, 937
BstACI GRCGYC 1 cut(s) 711
BstAUI TGTACA 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 356, 588
BstDEI CTNAG 6 cut(s) 254, 576, 938, 1059, 1073, 1122
BstENI CCTNNNNNAGG 1 cut(s) 744
BstF5I GGATG 1 cut(s) 544
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 4 cut(s) 25, 39, 967, 1046
BstMAI GTCTC 3 cut(s) 64, 150, 1226
BstMBI GATC 4 cut(s) 22, 36, 964, 1043
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 2 cut(s) 94, 486
BstSCI CCNGG 4 cut(s) 92, 364, 420, 484
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 1081
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 3 cut(s) 821, 926, 1183
BstV2I GAAGAC 1 cut(s) 774
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 3 cut(s) 8, 354, 420
BtgZI GCGATG 2 cut(s) 61, 224
BtsCI GGATG 1 cut(s) 544
BtsIMutI CAGTG 1 cut(s) 575
Cac8I GCNNGC 2 cut(s) 356, 588
CaiI CAGNNNCTG 1 cut(s) 592
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 419
CseI GACGC 1 cut(s) 132
Csp6I GTAC 5 cut(s) 300, 316, 447, 1005, 1088
CspCI CAANNNNNGTGG 2 cut(s) 1135, 1170
CviAII CATG 4 cut(s) 173, 665, 862, 875
CviQI GTAC 5 cut(s) 300, 316, 447, 1005, 1088
DdeI CTNAG 6 cut(s) 254, 576, 938, 1059, 1073, 1122
DpnI GATC 4 cut(s) 24, 38, 966, 1045
DpnII GATC 4 cut(s) 22, 36, 964, 1043
DraIII CACNNNGTG 1 cut(s) 1085
DriI GACNNNNNGTC 1 cut(s) 1015
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 116, 937
Eam1105I GACNNNNNGTC 1 cut(s) 1015
EarI CTCTTC 2 cut(s) 116, 937
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 442, 745
Eco31I GGTCTC 2 cut(s) 64, 1226
Eco32I GATATC 3 cut(s) 229, 885, 1144
Eco52I CGGCCG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 585
Eco88I CYCGRG 1 cut(s) 107
EcoNI CCTNNNNNAGG 1 cut(s) 744
EcoRI GAATTC 2 cut(s) 831, 1195
EcoRII CCWGG 2 cut(s) 92, 484
EcoRV GATATC 3 cut(s) 229, 885, 1144
EcoT14I CCWWGG 2 cut(s) 442, 745
EcoT22I ATGCAT 1 cut(s) 876
ErhI CCWWGG 2 cut(s) 442, 745
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 4 cut(s) 176, 668, 865, 878
FaqI GGGAC 1 cut(s) 1103
FatI CATG 4 cut(s) 172, 664, 861, 874
FauI CCCGC 1 cut(s) 26
Fnu4HI GCNGC 6 cut(s) 15, 28, 31, 810, 915, 1172
FokI GGATG 1 cut(s) 551
Fsp4HI GCNGC 6 cut(s) 15, 28, 31, 810, 915, 1172
FspBI CTAG 2 cut(s) 746, 858
GluI GCNGC 6 cut(s) 15, 28, 31, 810, 915, 1172
GsuI CTGGAG 1 cut(s) 890
HaeIII GGCC 3 cut(s) 8, 354, 420
HapII CCGG 5 cut(s) 9, 365, 399, 417, 422
HgaI GACGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 711
Hin1II CATG 4 cut(s) 176, 668, 865, 878
HincII GTYRAC 2 cut(s) 686, 922
HindII GTYRAC 2 cut(s) 686, 922
HindIII AAGCTT 3 cut(s) 306, 716, 839
HinfI GANTC 6 cut(s) 65, 103, 413, 563, 994, 1010
HpaI GTTAAC 1 cut(s) 922
HpaII CCGG 5 cut(s) 9, 365, 399, 417, 422
HphI GGTGA 5 cut(s) 380, 394, 719, 734, 1191
Hpy166II GTNNAC 6 cut(s) 449, 686, 692, 922, 1079, 1088
Hpy188I TCNGA 6 cut(s) 22, 64, 330, 640, 889, 941
Hpy188III TCNNGA 5 cut(s) 107, 200, 232, 907, 1233
Hpy8I GTNNAC 6 cut(s) 449, 686, 692, 922, 1079, 1088
Hpy99I CGWCG 2 cut(s) 220, 1230
HpyAV CCTTC 4 cut(s) 332, 344, 799, 860
HpyCH4IV ACGT 4 cut(s) 129, 688, 711, 1128
HpyCH4V TGCA 4 cut(s) 675, 874, 950, 1079
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 6 cut(s) 254, 576, 938, 1059, 1073, 1122
HpySE526I ACGT 4 cut(s) 129, 688, 711, 1128
Hsp92I GRCGYC 1 cut(s) 711
Hsp92II CATG 4 cut(s) 176, 668, 865, 878
KspAI GTTAAC 1 cut(s) 922
Kzo9I GATC 4 cut(s) 22, 36, 964, 1043
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 3 cut(s) 250, 622, 661
Lsp1109I GCAGC 3 cut(s) 821, 926, 1183
LweI GCATC 3 cut(s) 84, 471, 529
MaeI CTAG 2 cut(s) 746, 858
MaeII ACGT 4 cut(s) 129, 688, 711, 1128
MaeIII GTNAC 3 cut(s) 707, 787, 899
MalI GATC 4 cut(s) 24, 38, 966, 1045
MboI GATC 4 cut(s) 22, 36, 964, 1043
MboII GAAGA 6 cut(s) 79, 133, 591, 774, 954, 964
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 3 cut(s) 619, 638, 1081
MluCI AATT 8 cut(s) 342, 497, 607, 725, 760, 831, 1148, 1195
MlyI GAGTC 1 cut(s) 1004
MmeI TCCRAC 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 876
MseI TTAA 3 cut(s) 261, 606, 921
MslI CAYNNNNRTG 1 cut(s) 408
MspI CCGG 5 cut(s) 9, 365, 399, 417, 422
MspR9I CCNGG 4 cut(s) 94, 366, 422, 486
Mva1269I GAATGC 1 cut(s) 191
MvaI CCWGG 2 cut(s) 94, 486
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 2 cut(s) 366, 422
NdeII GATC 4 cut(s) 22, 36, 964, 1043
NlaIII CATG 4 cut(s) 176, 668, 865, 878
NlaIV GGNNCC 1 cut(s) 736
NmuCI GTSAC 2 cut(s) 707, 899
NsiI ATGCAT 1 cut(s) 876
PciSI GCTCTTC 1 cut(s) 116
PctI GAATGC 1 cut(s) 191
PfeI GAWTC 5 cut(s) 65, 103, 413, 563, 994
PkrI GCNGC 6 cut(s) 16, 29, 32, 811, 916, 1173
PleI GAGTC 1 cut(s) 1004
PpsI GAGTC 1 cut(s) 1004
PsiI TTATAA 1 cut(s) 756
Psp1406I AACGTT 2 cut(s) 688, 1128
Psp6I CCWGG 2 cut(s) 92, 484
PspGI CCWGG 2 cut(s) 92, 484
PspN4I GGNNCC 1 cut(s) 736
PspPI GGNCC 1 cut(s) 419
PstNI CAGNNNCTG 1 cut(s) 592
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 5 cut(s) 301, 317, 448, 1006, 1089
RsaNI GTAC 5 cut(s) 300, 316, 447, 1005, 1088
RseI CAYNNNNRTG 1 cut(s) 408
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 3 cut(s) 261, 606, 921
SatI GCNGC 6 cut(s) 15, 28, 31, 810, 915, 1172
Sau3AI GATC 4 cut(s) 22, 36, 964, 1043
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 1 cut(s) 1004
ScrFI CCNGG 4 cut(s) 94, 366, 422, 486
SduI GDGCHC 3 cut(s) 619, 638, 1081
SfaNI GCATC 3 cut(s) 84, 471, 529
SfcI CTRYAG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 1231
SmoI CTYRAG 1 cut(s) 1231
Sse9I AATT 8 cut(s) 342, 497, 607, 725, 760, 831, 1148, 1195
SsiI CCGC 3 cut(s) 27, 30, 33
SspMI CTAG 2 cut(s) 746, 858
StyD4I CCNGG 4 cut(s) 92, 364, 420, 484
StyI CCWWGG 2 cut(s) 442, 745
TaiI ACGT 4 cut(s) 132, 691, 714, 1131
TaqI TCGA 2 cut(s) 49, 101
TasI AATT 8 cut(s) 342, 497, 607, 725, 760, 831, 1148, 1195
TatI WGTACW 2 cut(s) 315, 1087
TauI GCSGC 2 cut(s) 30, 33
TfiI GAWTC 5 cut(s) 65, 103, 413, 563, 994
Tru1I TTAA 3 cut(s) 261, 606, 921
Tru9I TTAA 3 cut(s) 261, 606, 921
TscAI CASTG 1 cut(s) 575
TseFI GTSAC 2 cut(s) 707, 899
TseI GCWGC 4 cut(s) 14, 809, 914, 1171
Tsp45I GTSAC 2 cut(s) 707, 899
TspDTI ATGAA 2 cut(s) 480, 1044
TspGWI ACGGA 2 cut(s) 1022, 1214
TspRI CASTG 1 cut(s) 575
VneI GTGCAC 1 cut(s) 1077
XagI CCTNNNNNAGG 1 cut(s) 744
XapI RAATTY 3 cut(s) 831, 1148, 1195
XmaJI CCTAGG 1 cut(s) 745
XspI CTAG 2 cut(s) 746, 858
ZraI GACGTC 1 cut(s) 712
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.