Rh6CG084300

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010502
Physical Location & Seq
Reverse (-)
9220823 .. 9224431
3609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG084300.1

Sequence Viewer

Length: 918 bp
ATGCAGATTATTGAAGGAATTTGCGAAGGCCAGCTGTATCCGGGTGAATACCGATTGGTGAGGAAATGTATCACCGGACACATCTATGATTCCGGCCCGGTTGATTTTACAACTGACCTTGGTACACACTATGCTCTACACCCAACCATTCTAAAGGTGCCTGGTTCATCAAAATTGGTTTCGTGGGTTGCTAAAGGCATTGCTTCTGGTCTGGATGCTCTTTATCTTACTCGATTTGAATCCCAGTGGGCTGAGTATTGGCAGGCTCTGTATTCTTCAGTTAATTTGGGTGCTCCATTTCTCATTTTGTGCTCTGATAAAGACGATCTCGCTCCCTATCATGTTGTCTGCACTTTCAGTCAACGTTTACAAGAGTTTGGAGGTGATGTCAAGCTTGTGAAATTGAACGGTTCCCCTCACCTAGGTCATTATAAGAATTATCCAATACAATATAGGTCTTCTGTTACTCATTTTCTTGGGAAGGCAGCTTTGATTTTTTCTCAAAGAATTCAGAAGCTTGAATGGGAAATGACTAGCATGGAAGGCATGCATGATGAGATATCTGAACTAATCTGTGATCTCCAGAAAGCAGCCGTTAACTCTAATGAGAGCCTCAGAAGAGTTGCAGTTGAGCCAAGCGATCACTTCTTCTTGCCAAGTTCAGCGGAGAATCAAAATGGTACAGACTCTGGGTCATTACAAGATGAACAGAAAGAAAGATCACTCTGTCTGTCTAATCCTCCAAGCCTTAGTGCACATAGTGTACTTGGCAAAGTATTGTTTGATGTTTGTGTCCCTAAGAACGTTGATGGTTGGGATATCAAATTCTGTGGGTCTTTGAATGGGCAGCCATTTGCTTCTGCTCGTAGGAATTCACCTCCTCGTGGTATCAAAGGTCTCCGTCGCTCGAGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

305

Amino Acids

33.94

Weight (kDa)

6.79

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 24 - 272 2.3e-25 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 157
AciI CCGC 1 cut(s) 665
AclI AACGTT 2 cut(s) 364, 804
AcsI RAATTY 4 cut(s) 18, 507, 824, 871
AcuI CTGAAG 1 cut(s) 261
AdeI CACNNNGTG 1 cut(s) 761
AfaI GTAC 3 cut(s) 124, 682, 765
AfiI CCNNNNNNNGG 2 cut(s) 422, 884
AgsI TTSAA 5 cut(s) 14, 239, 406, 521, 841
AhdI GACNNNNNGTC 1 cut(s) 691
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 4 cut(s) 34, 394, 488, 517
AluI AGCT 4 cut(s) 34, 394, 488, 517
Alw21I GWGCWC 3 cut(s) 295, 314, 757
Alw26I GTCTC 1 cut(s) 902
Alw44I GTGCAC 1 cut(s) 753
AlwNI CAGNNNCTG 2 cut(s) 268, 689
Ama87I CYCGRG 1 cut(s) 907
AoxI GGCC 2 cut(s) 28, 94
ApaLI GTGCAC 1 cut(s) 753
ApeKI GCWGC 3 cut(s) 485, 590, 847
ApoI RAATTY 4 cut(s) 18, 507, 824, 871
AspA2I CCTAGG 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 95
AsuC2I CCSGG 2 cut(s) 42, 98
AsuHPI GGTGA 6 cut(s) 56, 64, 70, 395, 410, 867
AvaI CYCGRG 1 cut(s) 907
AvrII CCTAGG 1 cut(s) 421
BaeGI GKGCMC 1 cut(s) 757
BanI GGYRCC 1 cut(s) 157
BauI CACGAG 1 cut(s) 882
BbsI GAAGAC 1 cut(s) 450
Bbv12I GWGCWC 3 cut(s) 295, 314, 757
BbvI GCAGC 3 cut(s) 497, 602, 859
BccI CCATC 1 cut(s) 803
BceAI ACGGC 1 cut(s) 578
BciT130I CCWGG 1 cut(s) 162
BciVI GTATCC 1 cut(s) 48
BcnI CCSGG 2 cut(s) 42, 98
BcoDI GTCTC 1 cut(s) 902
BfaI CTAG 2 cut(s) 422, 534
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 3 cut(s) 486, 591, 848
BlnI CCTAGG 1 cut(s) 421
BlsI GCNGC 3 cut(s) 487, 592, 849
Bme1390I CCNGG 3 cut(s) 42, 98, 162
BmeRI GACNNNNNGTC 1 cut(s) 691
BmeT110I CYCGRG 1 cut(s) 907
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 159, 412
BmrFI CCNGG 3 cut(s) 42, 98, 162
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 205
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 450
BpmI CTGGAG 1 cut(s) 566
BpuMI CCSGG 2 cut(s) 42, 98
BsaBI GATNNNNATC 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 902
BsaJI CCNNGG 2 cut(s) 118, 421
BsaWI WCCGGW 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 884
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 238
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 118, 421
BseGI GGATG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 238
BseLI CCNNNNNNNGG 2 cut(s) 422, 884
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 243, 628
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 870
BseSI GKGCMC 1 cut(s) 757
BseXI GCAGC 3 cut(s) 497, 602, 859
BsgI GTGCAG 1 cut(s) 334
BshFI GGCC 2 cut(s) 30, 96
BshNI GGYRCC 1 cut(s) 157
BsiHKAI GWGCWC 3 cut(s) 295, 314, 757
BsiHKCI CYCGRG 1 cut(s) 907
BsiSI CCGG 4 cut(s) 41, 75, 93, 98
BslFI GGGAC 1 cut(s) 779
BslI CCNNNNNNNGG 2 cut(s) 422, 884
BsmAI GTCTC 1 cut(s) 902
BsmFI GGGAC 1 cut(s) 779
BsnI GGCC 2 cut(s) 30, 96
Bso31I GGTCTC 1 cut(s) 902
BsoBI CYCGRG 1 cut(s) 907
Bsp1286I GDGCHC 3 cut(s) 295, 314, 757
Bsp143I GATC 4 cut(s) 325, 577, 640, 719
BspACI CCGC 1 cut(s) 665
BspANI GGCC 2 cut(s) 30, 96
BspCNI CTCAG 2 cut(s) 244, 627
BspLI GGNNCC 2 cut(s) 159, 412
BspT107I GGYRCC 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 902
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 2 cut(s) 118, 421
BssMI GATC 4 cut(s) 325, 577, 640, 719
BssSI CACGAG 1 cut(s) 882
BssT1I CCWWGG 2 cut(s) 118, 421
Bst2BI CACGAG 1 cut(s) 882
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 410
Bst6I CTCTTC 1 cut(s) 613
BstC8I GCNNGC 3 cut(s) 32, 264, 548
BstDEI CTNAG 4 cut(s) 252, 614, 749, 798
BstENI CCTNNNNNAGG 1 cut(s) 420
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 4 cut(s) 328, 580, 643, 722
BstMAI GTCTC 1 cut(s) 902
BstMBI GATC 4 cut(s) 325, 577, 640, 719
BstMWI GCNNNNNNNGC 1 cut(s) 543
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 3 cut(s) 40, 96, 160
BstSLI GKGCMC 1 cut(s) 757
BstV1I GCAGC 3 cut(s) 497, 602, 859
BstV2I GAAGAC 1 cut(s) 450
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 2 cut(s) 30, 96
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 3 cut(s) 32, 264, 548
CaiI CAGNNNCTG 2 cut(s) 268, 689
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 3 cut(s) 123, 681, 764
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 4 cut(s) 341, 538, 547, 551
CviQI GTAC 3 cut(s) 123, 681, 764
DdeI CTNAG 4 cut(s) 252, 614, 749, 798
DpnI GATC 4 cut(s) 327, 579, 642, 721
DpnII GATC 4 cut(s) 325, 577, 640, 719
DraIII CACNNNGTG 1 cut(s) 761
DriI GACNNNNNGTC 1 cut(s) 691
Eam1104I CTCTTC 1 cut(s) 613
Eam1105I GACNNNNNGTC 1 cut(s) 691
EarI CTCTTC 1 cut(s) 613
Eco130I CCWWGG 2 cut(s) 118, 421
Eco31I GGTCTC 1 cut(s) 902
Eco32I GATATC 2 cut(s) 561, 820
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 907
EcoNI CCTNNNNNAGG 1 cut(s) 420
EcoRI GAATTC 2 cut(s) 507, 871
EcoRII CCWGG 1 cut(s) 160
EcoRV GATATC 2 cut(s) 561, 820
EcoT14I CCWWGG 2 cut(s) 118, 421
EcoT22I ATGCAT 1 cut(s) 552
ErhI CCWWGG 2 cut(s) 118, 421
FaeI CATG 4 cut(s) 344, 541, 550, 554
FaqI GGGAC 1 cut(s) 779
FatI CATG 4 cut(s) 340, 537, 546, 550
Fnu4HI GCNGC 3 cut(s) 486, 591, 848
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 3 cut(s) 486, 591, 848
FspBI CTAG 2 cut(s) 422, 534
GluI GCNGC 3 cut(s) 486, 591, 848
GsuI CTGGAG 1 cut(s) 566
HaeIII GGCC 2 cut(s) 30, 96
HapII CCGG 4 cut(s) 41, 75, 93, 98
Hin1II CATG 4 cut(s) 344, 541, 550, 554
HincII GTYRAC 2 cut(s) 362, 598
HindII GTYRAC 2 cut(s) 362, 598
HindIII AAGCTT 2 cut(s) 392, 515
HinfI GANTC 4 cut(s) 89, 239, 670, 686
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 4 cut(s) 41, 75, 93, 98
HphI GGTGA 6 cut(s) 56, 64, 70, 395, 410, 867
Hpy166II GTNNAC 6 cut(s) 125, 362, 368, 598, 755, 764
Hpy188I TCNGA 4 cut(s) 316, 513, 565, 617
Hpy188III TCNNGA 3 cut(s) 212, 583, 909
Hpy8I GTNNAC 6 cut(s) 125, 362, 368, 598, 755, 764
Hpy99I CGWCG 1 cut(s) 906
HpyAV CCTTC 4 cut(s) 8, 20, 475, 536
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 2 cut(s) 364, 804
HpyCH4V TGCA 5 cut(s) 4, 351, 550, 626, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 543
HpyF3I CTNAG 4 cut(s) 252, 614, 749, 798
HpySE526I ACGT 2 cut(s) 364, 804
Hsp92II CATG 4 cut(s) 344, 541, 550, 554
KspAI GTTAAC 1 cut(s) 598
Kzo9I GATC 4 cut(s) 325, 577, 640, 719
LmnI GCTCC 2 cut(s) 298, 337
Lsp1109I GCAGC 3 cut(s) 497, 602, 859
LweI GCATC 1 cut(s) 205
MaeI CTAG 2 cut(s) 422, 534
MaeII ACGT 2 cut(s) 364, 804
MaeIII GTNAC 1 cut(s) 463
MalI GATC 4 cut(s) 327, 579, 642, 721
MboI GATC 4 cut(s) 325, 577, 640, 719
MboII GAAGA 4 cut(s) 267, 450, 630, 640
MhlI GDGCHC 3 cut(s) 295, 314, 757
MluCI AATT 8 cut(s) 18, 173, 283, 401, 436, 507, 824, 871
MlyI GAGTC 1 cut(s) 680
MnlI CCTC 7 cut(s) 54, 374, 426, 623, 750, 888, 891
Mph1103I ATGCAT 1 cut(s) 552
MseI TTAA 2 cut(s) 282, 597
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 2 cut(s) 34, 665
MspI CCGG 4 cut(s) 41, 75, 93, 98
MspR9I CCNGG 3 cut(s) 42, 98, 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 543
NciI CCSGG 2 cut(s) 42, 98
NdeII GATC 4 cut(s) 325, 577, 640, 719
NlaIII CATG 4 cut(s) 344, 541, 550, 554
NlaIV GGNNCC 2 cut(s) 159, 412
NsiI ATGCAT 1 cut(s) 552
NspI RCATGY 1 cut(s) 550
PaeI GCATGC 1 cut(s) 550
PaeR7I CTCGAG 1 cut(s) 907
PfeI GAWTC 3 cut(s) 89, 239, 670
PkrI GCNGC 3 cut(s) 487, 592, 849
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
PsiI TTATAA 1 cut(s) 432
Psp1406I AACGTT 2 cut(s) 364, 804
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 159, 412
PspPI GGNCC 1 cut(s) 95
PstNI CAGNNNCTG 2 cut(s) 268, 689
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 3 cut(s) 124, 682, 765
RsaNI GTAC 3 cut(s) 123, 681, 764
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 2 cut(s) 282, 597
SatI GCNGC 3 cut(s) 486, 591, 848
Sau3AI GATC 4 cut(s) 325, 577, 640, 719
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 3 cut(s) 42, 98, 162
SduI GDGCHC 3 cut(s) 295, 314, 757
SfaNI GCATC 1 cut(s) 205
Sfr274I CTCGAG 1 cut(s) 907
SlaI CTCGAG 1 cut(s) 907
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 907
SmoI CTYRAG 1 cut(s) 907
SphI GCATGC 1 cut(s) 550
Sse9I AATT 8 cut(s) 18, 173, 283, 401, 436, 507, 824, 871
SsiI CCGC 1 cut(s) 665
SspMI CTAG 2 cut(s) 422, 534
StyD4I CCNGG 3 cut(s) 40, 96, 160
StyI CCWWGG 2 cut(s) 118, 421
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 2 cut(s) 367, 807
TaqI TCGA 2 cut(s) 232, 908
TasI AATT 8 cut(s) 18, 173, 283, 401, 436, 507, 824, 871
TatI WGTACW 1 cut(s) 763
TfiI GAWTC 3 cut(s) 89, 239, 670
Tru1I TTAA 2 cut(s) 282, 597
Tru9I TTAA 2 cut(s) 282, 597
TscAI CASTG 1 cut(s) 251
TseI GCWGC 3 cut(s) 485, 590, 847
TspDTI ATGAA 2 cut(s) 156, 720
TspGWI ACGGA 1 cut(s) 890
TspRI CASTG 1 cut(s) 251
VneI GTGCAC 1 cut(s) 753
XagI CCTNNNNNAGG 1 cut(s) 420
XapI RAATTY 4 cut(s) 18, 507, 824, 871
XceI RCATGY 1 cut(s) 550
XhoI CTCGAG 1 cut(s) 907
XmaJI CCTAGG 1 cut(s) 421
XspI CTAG 2 cut(s) 422, 534
Zsp2I ATGCAT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.