Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010502

Physical Location & Seq

Genomic Coordinates Reverse (-)

9244685 .. 9247515

Gene Structure 2831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g07630.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTGGAGCGGTGGCGGAGCTAGTGGTAGTTGCGGTGGCGATGGTGGCGGCGGTGGAATCCACTGGGGACGGAAGGAGGAGGTCTCTCATTCGAAAGGAATCGTTGTCATCTTCGCTTGGGTTTCGATTCACGAGAGGCACTTGCAGAATTACGTGGATTTGTACTCGTCTCTCGGTTGGAATTCCCTCGTTTGCCATTCCCATTTTCTCCATGCATTCTATCCCGAAAAGGCCATGTCGTTCGCCTTTGTTATTCTCAATGAGCTTGTTGAGGAGCTAAGGGTTAAGCCATGTCCTGTAGTCTTTGTGGCTCTTTCTGCTGGTACAAAAGCTTGTATGTACAAGGTTTTTCGGATTCTTGACGGAATTTGTGACGGTCAGCATTATCTGGCTGAATATCGATTGGTAAGAAAGTGTATTACTGGACACATCTATGATTCTGGTCCTGTTGATTTTACAAGTGATCTGGGCACTCAATATGCTCTACACCCAACCATTCTAAAGATGCCTGGATCATCAAAACTGGTTTCTTGGGTAGCTAAAGGCATTGCTTCTGGTTTGGATGCGTTGTACCTTACTAGATTTGAATCCCAATGTGCTGAGTATTGGCACGCTCTTTTTTCGTCTGTTAGTTTGGGTGCTCCATTTCTCATTTTGTGCTCTGATAAAGATGATCTGGCCCCCTATCACATTATCTGTAATTTCACTCACCGTTTACAAGAACTTGGAGGAGATGTCAAGCTTGTGAAATTGAATGGCTCCCCTCATCTAGGTCATTATAAGTATTATCCAATACAGTATAGGTCTTCCGTTACTCACTTTCTTGAAAAGGCTGCTTTGGTTTTTTCTCAAAGAATTGAAGAACTTGAAGGTGACAATACTAGCATGGAAGGCATGCAAGATGAGATATCTGAACTAATATGTGATCTCCAGAAAGCAGCAGTTAACTCTAATCAGAGCCTTAGAAGAGTTGCAGTGGAGCCGAGCGACCACTTCTTCTTGCCAAGTTCAGCTGAGAATCAAAATAGTACGGACTCCGGGTCTTTACAAGATGAACAAAAAGAACGATCCGTCTCTCTGCCCAGTCCCCCAAGCATTAGTGCACATAGTGTACTTGGCCAAGTCCTGTTTGATGTTTGTGTCCCTAAGAACGTTGAGGGTTGGGATATTAAATTTTGCGGGTCTTTGAATGGGCAGCCATTTGCCTCTGCTCGTAGGAATTCACCTCCTCGTGGTCTCAAAAGCTTTCGTCGCTCAAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

422

Amino Acids

46.55

Weight (kDa)

6.52

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15695
fragaria_vesca	FvH4_2g06340 FvH4_2g06340
malus_domestica	MD05G1077400.v1.1 MD10G1092600.v1.1
prunus_persica	Prupe.8G122400_v2.0.a1
pyrus_communis	pycom05g07120 pycom10g07630
rosa_chinensis	RchiOBHm_Chr6g0258221
rosa_laevigata	RLG00000014638
rosa_multiflora	Rmu_sc0004230.1_g000007 Rmu_sc0006058.1_g000004
rosa_roxburghii	Rroxscaffold_7G00205350
rosa_rugosa	Rorug05G0579400 Rorug05G0579500
rosa_samantha	Rh6AG097400 Rh6BG088400 Rh6CG084300 Rh6DG080500
rosa_wichuraiana	Rw6G008250 Rw6G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
AccBSI	CCGCTC	1 cut(s)	9
AciI	CCGC	6 cut(s)	9, 15, 33, 48, 51, 1179
AclI	AACGTT	1 cut(s)	1152
AclWI	GGATC	2 cut(s)	520, 1062
AcoI	YGGCCR	1 cut(s)	1117
AcsI	RAATTY	4 cut(s)	181, 366, 1172, 1219
AdeI	CACNNNGTG	1 cut(s)	1109
AfaI	GTAC	6 cut(s)	164, 325, 341, 572, 1030, 1113
AfiI	CCNNNNNNNGG	2 cut(s)	770, 1232
AgsI	TTSAA	6 cut(s)	587, 754, 827, 860, 869, 1189
AhdI	GACNNNNNGTC	1 cut(s)	1039
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	8 cut(s)	20, 265, 277, 332, 539, 742, 1013, 1245
AluI	AGCT	8 cut(s)	20, 265, 277, 332, 539, 742, 1013, 1245
Alw21I	GWGCWC	3 cut(s)	643, 662, 1105
Alw26I	GTCTC	4 cut(s)	88, 174, 1078, 1241
Alw44I	GTGCAC	1 cut(s)	1101
AlwI	GGATC	2 cut(s)	520, 1062
AoxI	GGCC	3 cut(s)	231, 678, 1117
ApaLI	GTGCAC	1 cut(s)	1101
ApeKI	GCWGC	3 cut(s)	833, 938, 1195
ApoI	RAATTY	4 cut(s)	181, 366, 1172, 1219
AspS9I	GGNCC	2 cut(s)	443, 679
AsuC2I	CCSGG	1 cut(s)	1039
AsuHPI	GGTGA	3 cut(s)	701, 884, 1215
AsuII	TTCGAA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	443
BaeGI	GKGCMC	2 cut(s)	473, 1105
BalI	TGGCCA	1 cut(s)	1119
BauI	CACGAG	2 cut(s)	131, 1230
BbsI	GAAGAC	1 cut(s)	798
Bbv12I	GWGCWC	3 cut(s)	643, 662, 1105
BbvI	GCAGC	3 cut(s)	820, 950, 1207
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	1039
BcoDI	GTCTC	4 cut(s)	88, 174, 1078, 1241
BfaI	CTAG	4 cut(s)	21, 579, 770, 882
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	4 cut(s)	49, 834, 939, 1196
BlsI	GCNGC	4 cut(s)	50, 835, 940, 1197
Bme1390I	CCNGG	2 cut(s)	510, 1039
Bme18I	GGWCC	1 cut(s)	443
BmeRI	GACNNNNNGTC	1 cut(s)	1039
BmgT120I	GGNCC	2 cut(s)	443, 679
BmiI	GGNNCC	3 cut(s)	681, 760, 981
BmrFI	CCNGG	2 cut(s)	510, 1039
BmrI	ACTGGG	2 cut(s)	73, 1077
BmsI	GCATC	2 cut(s)	495, 553
BmuI	ACTGGG	2 cut(s)	73, 1077
BpiI	GAAGAC	1 cut(s)	798
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	914
Bpu10I	CCTNAGC	1 cut(s)	278
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	1240
BpuMI	CCSGG	1 cut(s)	1039
Bsa29I	ATCGAT	1 cut(s)	400
BsaAI	YACGTR	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	586
BsaI	GGTCTC	2 cut(s)	88, 1241
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	770, 1232
Bse1I	ACTGG	4 cut(s)	68, 427, 528, 1083
Bse3DI	GCAATG	1 cut(s)	546
Bse8I	GATNNNNATC	1 cut(s)	586
BseBI	CCWGG	1 cut(s)	510
BseCI	ATCGAT	1 cut(s)	400
BseGI	GGATG	1 cut(s)	568
BseJI	GATNNNNATC	1 cut(s)	586
BseLI	CCNNNNNNNGG	2 cut(s)	770, 1232
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	591, 1005
BseNI	ACTGG	4 cut(s)	68, 427, 528, 1083
BseRI	GAGGAG	4 cut(s)	92, 287, 744, 1218
BseSI	GKGCMC	2 cut(s)	473, 1105
BseXI	GCAGC	3 cut(s)	820, 950, 1207
BshFI	GGCC	3 cut(s)	233, 680, 1119
BshVI	ATCGAT	1 cut(s)	400
BsiHKAI	GWGCWC	3 cut(s)	643, 662, 1105
BsiSI	CCGG	1 cut(s)	1038
BslFI	GGGAC	3 cut(s)	81, 1071, 1127
BslI	CCNNNNNNNGG	2 cut(s)	770, 1232
BsmAI	GTCTC	4 cut(s)	88, 174, 1078, 1241
BsmBI	CGTCTC	2 cut(s)	174, 1078
BsmFI	GGGAC	3 cut(s)	81, 1071, 1127
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	233, 680, 1119
Bso31I	GGTCTC	2 cut(s)	88, 1241
Bsp119I	TTCGAA	1 cut(s)	92
Bsp1286I	GDGCHC	4 cut(s)	473, 643, 662, 1105
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	5 cut(s)	463, 512, 673, 925, 1067
BspACI	CCGC	6 cut(s)	9, 15, 33, 48, 51, 1179
BspANI	GGCC	3 cut(s)	233, 680, 1119
BspCNI	CTCAG	2 cut(s)	592, 1006
BspDI	ATCGAT	1 cut(s)	400
BspLI	GGNNCC	3 cut(s)	681, 760, 981
BspPI	GGATC	2 cut(s)	520, 1062
BspT104I	TTCGAA	1 cut(s)	92
BspTNI	GGTCTC	2 cut(s)	88, 1241
BsrBI	CCGCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	546
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	4 cut(s)	68, 427, 528, 1083
BssMI	GATC	5 cut(s)	463, 512, 673, 925, 1067
BssSI	CACGAG	2 cut(s)	131, 1230
Bst2BI	CACGAG	2 cut(s)	131, 1230
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	377, 713, 798
Bst6I	CTCTTC	1 cut(s)	961
BstAUI	TGTACA	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	154
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	612, 896
BstDEI	CTNAG	5 cut(s)	278, 600, 962, 1014, 1146
BstENI	CCTNNNNNAGG	1 cut(s)	768
BstF5I	GGATG	1 cut(s)	568
BstKTI	GATC	5 cut(s)	466, 515, 676, 928, 1070
BstMAI	GTCTC	4 cut(s)	88, 174, 1078, 1241
BstMBI	GATC	5 cut(s)	463, 512, 673, 925, 1067
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 317, 891, 1251
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	1 cut(s)	898
BstSCI	CCNGG	2 cut(s)	508, 1037
BstSFI	CTRYAG	1 cut(s)	297
BstSLI	GKGCMC	2 cut(s)	473, 1105
BstV1I	GCAGC	3 cut(s)	820, 950, 1207
BstV2I	GAAGAC	1 cut(s)	798
Bsu15I	ATCGAT	1 cut(s)	400
BsuRI	GGCC	3 cut(s)	233, 680, 1119
BsuTUI	ATCGAT	1 cut(s)	400
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	2 cut(s)	61, 981
Cac8I	GCNNGC	2 cut(s)	612, 896
Cfr13I	GGNCC	2 cut(s)	443, 679
ClaI	ATCGAT	1 cut(s)	400
Csp6I	GTAC	6 cut(s)	163, 324, 340, 571, 1029, 1112
CviAII	CATG	5 cut(s)	212, 235, 291, 886, 895
CviQI	GTAC	6 cut(s)	163, 324, 340, 571, 1029, 1112
DdeI	CTNAG	5 cut(s)	278, 600, 962, 1014, 1146
DpnI	GATC	5 cut(s)	465, 514, 675, 927, 1069
DpnII	GATC	5 cut(s)	463, 512, 673, 925, 1067
DraIII	CACNNNGTG	1 cut(s)	1109
DriI	GACNNNNNGTC	1 cut(s)	1039
EaeI	YGGCCR	1 cut(s)	1117
Eam1104I	CTCTTC	1 cut(s)	961
Eam1105I	GACNNNNNGTC	1 cut(s)	1039
EarI	CTCTTC	1 cut(s)	961
EciI	GGCGGA	1 cut(s)	30
Eco31I	GGTCTC	2 cut(s)	88, 1241
Eco32I	GATATC	1 cut(s)	909
Eco47I	GGWCC	1 cut(s)	443
EcoNI	CCTNNNNNAGG	1 cut(s)	768
EcoRI	GAATTC	2 cut(s)	181, 1219
EcoRII	CCWGG	1 cut(s)	508
EcoRV	GATATC	1 cut(s)	909
EcoT22I	ATGCAT	1 cut(s)	217
Esp3I	CGTCTC	2 cut(s)	174, 1078
FaeI	CATG	5 cut(s)	215, 238, 294, 889, 898
FaqI	GGGAC	3 cut(s)	81, 1071, 1127
FatI	CATG	5 cut(s)	211, 234, 290, 885, 894
FauI	CCCGC	1 cut(s)	1172
Fnu4HI	GCNGC	4 cut(s)	49, 834, 939, 1196
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	4 cut(s)	49, 834, 939, 1196
FspBI	CTAG	4 cut(s)	21, 579, 770, 882
GluI	GCNGC	4 cut(s)	49, 834, 939, 1196
GsuI	CTGGAG	1 cut(s)	914
HaeIII	GGCC	3 cut(s)	233, 680, 1119
HapII	CCGG	1 cut(s)	1038
Hin1II	CATG	5 cut(s)	215, 238, 294, 889, 898
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HindIII	AAGCTT	3 cut(s)	330, 740, 1243
HinfI	GANTC	8 cut(s)	57, 99, 127, 355, 437, 587, 1018, 1034
HpaI	GTTAAC	1 cut(s)	946
HpaII	CCGG	1 cut(s)	1038
HphI	GGTGA	3 cut(s)	701, 884, 1215
Hpy166II	GTNNAC	4 cut(s)	716, 946, 1103, 1112
Hpy188I	TCNGA	4 cut(s)	354, 664, 913, 957
Hpy188III	TCNNGA	6 cut(s)	131, 224, 359, 824, 931, 1257
Hpy8I	GTNNAC	4 cut(s)	716, 946, 1103, 1112
Hpy99I	CGWCG	1 cut(s)	1254
HpyAV	CCTTC	3 cut(s)	67, 863, 884
HpyCH4III	ACNGT	3 cut(s)	377, 713, 798
HpyCH4IV	ACGT	2 cut(s)	153, 1152
HpyCH4V	TGCA	5 cut(s)	145, 215, 898, 974, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 317, 891, 1251
HpyF3I	CTNAG	5 cut(s)	278, 600, 962, 1014, 1146
HpySE526I	ACGT	2 cut(s)	153, 1152
Hsp92II	CATG	5 cut(s)	215, 238, 294, 889, 898
KspAI	GTTAAC	1 cut(s)	946
Kzo9I	GATC	5 cut(s)	463, 512, 673, 925, 1067
LmnI	GCTCC	6 cut(s)	6, 17, 274, 646, 764, 979
Lsp1109I	GCAGC	3 cut(s)	820, 950, 1207
LweI	GCATC	2 cut(s)	495, 553
MaeI	CTAG	4 cut(s)	21, 579, 770, 882
MaeII	ACGT	2 cut(s)	153, 1152
MaeIII	GTNAC	3 cut(s)	371, 811, 872
MalI	GATC	5 cut(s)	465, 514, 675, 927, 1069
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	5 cut(s)	463, 512, 673, 925, 1067
MboII	GAAGA	5 cut(s)	103, 798, 872, 978, 988
MhlI	GDGCHC	4 cut(s)	473, 643, 662, 1105
MlsI	TGGCCA	1 cut(s)	1119
MluCI	AATT	8 cut(s)	148, 181, 366, 700, 749, 855, 1172, 1219
MluNI	TGGCCA	1 cut(s)	1119
MlyI	GAGTC	1 cut(s)	1028
MmeI	TCCRAC	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	1119
Mph1103I	ATGCAT	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	1119
MseI	TTAA	3 cut(s)	285, 945, 1170
MslI	CAYNNNNRTG	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	1119
MspA1I	CMGCKG	1 cut(s)	1013
MspI	CCGG	1 cut(s)	1038
MspR9I	CCNGG	2 cut(s)	510, 1039
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	4 cut(s)	45, 317, 891, 1251
NciI	CCSGG	1 cut(s)	1039
NdeII	GATC	5 cut(s)	463, 512, 673, 925, 1067
NlaIII	CATG	5 cut(s)	215, 238, 294, 889, 898
NlaIV	GGNNCC	3 cut(s)	681, 760, 981
NmeAIII	GCCGAG	1 cut(s)	1008
NmuCI	GTSAC	2 cut(s)	371, 872
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	1 cut(s)	898
NspV	TTCGAA	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	898
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	7 cut(s)	57, 99, 127, 355, 437, 587, 1018
PkrI	GCNGC	4 cut(s)	50, 835, 940, 1197
PleI	GAGTC	1 cut(s)	1028
PpsI	GAGTC	1 cut(s)	1028
Ppu21I	YACGTR	1 cut(s)	154
PsiI	TTATAA	1 cut(s)	780
Psp1406I	AACGTT	1 cut(s)	1152
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	3 cut(s)	681, 760, 981
PspPI	GGNCC	2 cut(s)	443, 679
PvuII	CAGCTG	1 cut(s)	1013
RsaI	GTAC	6 cut(s)	164, 325, 341, 572, 1030, 1113
RsaNI	GTAC	6 cut(s)	163, 324, 340, 571, 1029, 1112
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	285, 945, 1170
SatI	GCNGC	4 cut(s)	49, 834, 939, 1196
Sau3AI	GATC	5 cut(s)	463, 512, 673, 925, 1067
Sau96I	GGNCC	2 cut(s)	443, 679
SchI	GAGTC	1 cut(s)	1028
ScrFI	CCNGG	2 cut(s)	510, 1039
SduI	GDGCHC	4 cut(s)	473, 643, 662, 1105
SfaNI	GCATC	2 cut(s)	495, 553
SfcI	CTRYAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	92
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	1255
SmoI	CTYRAG	1 cut(s)	1255
SphI	GCATGC	1 cut(s)	898
Sse9I	AATT	8 cut(s)	148, 181, 366, 700, 749, 855, 1172, 1219
SsiI	CCGC	6 cut(s)	9, 15, 33, 48, 51, 1179
SspMI	CTAG	4 cut(s)	21, 579, 770, 882
StyD4I	CCNGG	2 cut(s)	508, 1037
TaaI	ACNGT	3 cut(s)	377, 713, 798
TaiI	ACGT	2 cut(s)	156, 1155
TaqI	TCGA	3 cut(s)	92, 125, 400
TasI	AATT	8 cut(s)	148, 181, 366, 700, 749, 855, 1172, 1219
TatI	WGTACW	3 cut(s)	162, 339, 1111
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	7 cut(s)	57, 99, 127, 355, 437, 587, 1018
Tru1I	TTAA	3 cut(s)	285, 945, 1170
Tru9I	TTAA	3 cut(s)	285, 945, 1170
TscAI	CASTG	2 cut(s)	68, 981
TseFI	GTSAC	2 cut(s)	371, 872
TseI	GCWGC	3 cut(s)	833, 938, 1195
Tsp45I	GTSAC	2 cut(s)	371, 872
TspDTI	ATGAA	1 cut(s)	1068
TspGWI	ACGGA	5 cut(s)	85, 378, 799, 1046, 1060
TspRI	CASTG	2 cut(s)	68, 981
VneI	GTGCAC	1 cut(s)	1101
VpaK11BI	GGWCC	1 cut(s)	443
XagI	CCTNNNNNAGG	1 cut(s)	768
XapI	RAATTY	4 cut(s)	181, 366, 1172, 1219
XceI	RCATGY	1 cut(s)	898
XspI	CTAG	4 cut(s)	21, 579, 770, 882
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.