Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010502

Physical Location & Seq

Genomic Coordinates Reverse (-)

9140472 .. 9143918

Gene Structure 3447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG080500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCTGCCGGTGCTGCTTCTGATCGCGGCGGCGGGATCTACTGGGGTCGAAAGGAGGTCTCCGATTCCAAAGGCATCGCCGTCATCTTCGCCTGGGTTTCGATTCCCGAGCGACACTTGAAGAGCTACGTCAATTTGTATGCGTCTCTGGGTTGGAACTCCCTCGTCTGCCATGCTCATTTTCTCCACGCGTTCTATCCCGAAAGGGCGATGTCGTCGGCATTTGATATCCTGAATGAGCTTGTGGAGGAGCTAAGGATTAAGCCGTGTCCCGTTGTTTTTGTGGGTCTTTCTGCTGGTACTAAAGCTTGTATGTACAAAGTTTTTCAGATTATTGAAGGAATTTGCGAAGGCCAGCTGTATCCGGGTGAATACCGATTGGTGAGGAAATGTATCACCGGACACATCTATGATTCCGGCCCGGTTGATTTTACAACTGACCTTGGTACACACTATGCTCTACACCCAACCATTCTAAAGGTGCCTGGTTCATCAAAATTGGTTTCGTGGGTTGCTAAAGGCATTGCTTCTGGTCTGGATGCTCTTTATCTTACTCGATTTGAATCCCAGTGGGCTGAGTATTGGCAGGCTCTGTATTCTTCAGTTAATTTGGGTGCTCCATTTCTCATTTTGTGCTCTGATAAAGACGATCTCGCTCCCTATCATGTTGTCTGCACTTTCAGTCAACGTTTACAAGAGTTTGGAGGTGATGTCAAGCTTGTGAAATTGAACGGTTCCCCTCACCTAGGTTTGTCTCAAAACCTCTTCTTTCTAGTCTTGTCAAGTGTGCACTACCAAAATCTAGTGCTCCTTCAACATACTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

275

Amino Acids

30.54

Weight (kDa)

6.82

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF829	PF05705	27 - 102	2.3e-06	Eukaryotic protein of unknown function (DUF829)
DUF829	PF05705	132 - 250	2.4e-12	Eukaryotic protein of unknown function (DUF829)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15695
fragaria_vesca	FvH4_2g06340 FvH4_2g06340
malus_domestica	MD05G1077400.v1.1 MD10G1092600.v1.1
prunus_persica	Prupe.8G122400_v2.0.a1
pyrus_communis	pycom05g07120 pycom10g07630
rosa_chinensis	RchiOBHm_Chr6g0258221
rosa_laevigata	RLG00000014638
rosa_multiflora	Rmu_sc0004230.1_g000007 Rmu_sc0006058.1_g000004
rosa_roxburghii	Rroxscaffold_7G00205350
rosa_rugosa	Rorug05G0579400 Rorug05G0579500
rosa_samantha	Rh6AG097400 Rh6BG088400 Rh6CG084300 Rh6DG080500
rosa_wichuraiana	Rw6G008250 Rw6G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	481
AccII	CGCG	2 cut(s)	27, 191
AciI	CCGC	3 cut(s)	27, 30, 33
AclI	AACGTT	1 cut(s)	688
AclWI	GGATC	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	3 cut(s)	301, 317, 448
AfiI	CCNNNNNNNGG	1 cut(s)	746
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	5 cut(s)	121, 338, 563, 730, 815
AjnI	CCWGG	2 cut(s)	92, 484
AluBI	AGCT	6 cut(s)	126, 241, 253, 308, 358, 718
AluI	AGCT	6 cut(s)	126, 241, 253, 308, 358, 718
Alw21I	GWGCWC	4 cut(s)	619, 638, 792, 810
Alw26I	GTCTC	3 cut(s)	64, 150, 759
Alw44I	GTGCAC	1 cut(s)	788
AlwI	GGATC	1 cut(s)	44
AlwNI	CAGNNNCTG	1 cut(s)	592
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	352, 418
ApaLI	GTGCAC	1 cut(s)	788
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	342
AspA2I	CCTAGG	1 cut(s)	745
AspS9I	GGNCC	1 cut(s)	419
AsuC2I	CCSGG	2 cut(s)	366, 422
AsuHPI	GGTGA	5 cut(s)	380, 388, 394, 719, 734
AvaI	CYCGRG	1 cut(s)	107
AvrII	CCTAGG	1 cut(s)	745
BaeGI	GKGCMC	1 cut(s)	792
BanI	GGYRCC	1 cut(s)	481
Bbv12I	GWGCWC	4 cut(s)	619, 638, 792, 810
BceAI	ACGGC	2 cut(s)	65, 250
BciT130I	CCWGG	2 cut(s)	94, 486
BciVI	GTATCC	1 cut(s)	372
BcnI	CCSGG	2 cut(s)	366, 422
BcoDI	GTCTC	3 cut(s)	64, 150, 759
BfaI	CTAG	3 cut(s)	746, 773, 803
BfuI	GTATCC	1 cut(s)	372
BisI	GCNGC	3 cut(s)	15, 28, 31
BlnI	CCTAGG	1 cut(s)	745
BlsI	GCNGC	3 cut(s)	16, 29, 32
Bme1390I	CCNGG	4 cut(s)	94, 366, 422, 486
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	483, 736
BmrFI	CCNGG	4 cut(s)	94, 366, 422, 486
BmrI	ACTGGG	2 cut(s)	52, 562
BmsI	GCATC	2 cut(s)	84, 529
BmuI	ACTGGG	2 cut(s)	52, 562
Bpu10I	CCTNAGC	1 cut(s)	254
BpuMI	CCSGG	2 cut(s)	366, 422
BsaBI	GATNNNNATC	1 cut(s)	562
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	3 cut(s)	93, 442, 745
BsaWI	WCCGGW	1 cut(s)	398
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	47, 568
Bse3DI	GCAATG	1 cut(s)	522
Bse8I	GATNNNNATC	1 cut(s)	562
BseBI	CCWGG	2 cut(s)	94, 486
BseDI	CCNNGG	3 cut(s)	93, 442, 745
BseGI	GGATG	1 cut(s)	544
BseJI	GATNNNNATC	1 cut(s)	562
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	2 cut(s)	47, 568
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	792
BsgI	GTGCAG	1 cut(s)	658
Bsh1236I	CGCG	2 cut(s)	27, 191
BshFI	GGCC	2 cut(s)	354, 420
BshNI	GGYRCC	1 cut(s)	481
BsiHKAI	GWGCWC	4 cut(s)	619, 638, 792, 810
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	5 cut(s)	9, 365, 399, 417, 422
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmAI	GTCTC	3 cut(s)	64, 150, 759
BsmBI	CGTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	2 cut(s)	354, 420
Bso31I	GGTCTC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	4 cut(s)	619, 638, 792, 810
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	22, 36, 649
BspACI	CCGC	3 cut(s)	27, 30, 33
BspANI	GGCC	2 cut(s)	354, 420
BspCNI	CTCAG	1 cut(s)	568
BspFNI	CGCG	2 cut(s)	27, 191
BspLI	GGNNCC	2 cut(s)	483, 736
BspPI	GGATC	1 cut(s)	44
BspQI	GCTCTTC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	47, 568
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	3 cut(s)	93, 442, 745
BssMI	GATC	3 cut(s)	22, 36, 649
BssT1I	CCWWGG	2 cut(s)	442, 745
Bst2UI	CCWGG	2 cut(s)	94, 486
Bst4CI	ACNGT	1 cut(s)	734
Bst6I	CTCTTC	2 cut(s)	116, 770
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	356, 588
BstDEI	CTNAG	2 cut(s)	254, 576
BstENI	CCTNNNNNAGG	1 cut(s)	744
BstF5I	GGATG	1 cut(s)	544
BstFNI	CGCG	2 cut(s)	27, 191
BstKTI	GATC	3 cut(s)	25, 39, 652
BstMAI	GTCTC	3 cut(s)	64, 150, 759
BstMBI	GATC	3 cut(s)	22, 36, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	2 cut(s)	94, 486
BstSCI	CCNGG	4 cut(s)	92, 364, 420, 484
BstSLI	GKGCMC	1 cut(s)	792
BstUI	CGCG	2 cut(s)	27, 191
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	354, 420
BtgZI	GCGATG	2 cut(s)	61, 224
BtsCI	GGATG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	575
Cac8I	GCNNGC	2 cut(s)	356, 588
CaiI	CAGNNNCTG	1 cut(s)	592
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	419
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	3 cut(s)	300, 316, 447
CviAII	CATG	2 cut(s)	173, 665
CviQI	GTAC	3 cut(s)	300, 316, 447
DdeI	CTNAG	2 cut(s)	254, 576
DpnI	GATC	3 cut(s)	24, 38, 651
DpnII	GATC	3 cut(s)	22, 36, 649
Eam1104I	CTCTTC	2 cut(s)	116, 770
EarI	CTCTTC	2 cut(s)	116, 770
Eco130I	CCWWGG	2 cut(s)	442, 745
Eco31I	GGTCTC	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	1 cut(s)	744
EcoRII	CCWGG	2 cut(s)	92, 484
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	442, 745
ErhI	CCWWGG	2 cut(s)	442, 745
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	2 cut(s)	176, 668
FaiI	YATR	7 cut(s)	141, 174, 314, 411, 456, 666, 819
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	2 cut(s)	172, 664
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	15, 28, 31
FokI	GGATG	1 cut(s)	551
Fsp4HI	GCNGC	3 cut(s)	15, 28, 31
FspBI	CTAG	3 cut(s)	746, 773, 803
GluI	GCNGC	3 cut(s)	15, 28, 31
HaeIII	GGCC	2 cut(s)	354, 420
HapII	CCGG	5 cut(s)	9, 365, 399, 417, 422
HgaI	GACGC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	176, 668
HincII	GTYRAC	1 cut(s)	686
HindII	GTYRAC	1 cut(s)	686
HindIII	AAGCTT	2 cut(s)	306, 716
HinfI	GANTC	4 cut(s)	65, 103, 413, 563
HpaII	CCGG	5 cut(s)	9, 365, 399, 417, 422
HphI	GGTGA	5 cut(s)	380, 388, 394, 719, 734
Hpy166II	GTNNAC	4 cut(s)	449, 686, 692, 790
Hpy188I	TCNGA	4 cut(s)	22, 64, 330, 640
Hpy188III	TCNNGA	4 cut(s)	107, 200, 232, 536
Hpy8I	GTNNAC	4 cut(s)	449, 686, 692, 790
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	3 cut(s)	332, 344, 821
HpyCH4III	ACNGT	1 cut(s)	734
HpyCH4IV	ACGT	2 cut(s)	129, 688
HpyCH4V	TGCA	2 cut(s)	675, 790
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	254, 576
HpySE526I	ACGT	2 cut(s)	129, 688
Hsp92II	CATG	2 cut(s)	176, 668
Kzo9I	GATC	3 cut(s)	22, 36, 649
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	4 cut(s)	250, 622, 661, 813
LweI	GCATC	2 cut(s)	84, 529
MaeI	CTAG	3 cut(s)	746, 773, 803
MaeII	ACGT	2 cut(s)	129, 688
MalI	GATC	3 cut(s)	24, 38, 651
MboI	GATC	3 cut(s)	22, 36, 649
MboII	GAAGA	4 cut(s)	79, 133, 591, 757
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	4 cut(s)	619, 638, 792, 810
MluCI	AATT	5 cut(s)	133, 342, 497, 607, 725
MluI	ACGCGT	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	7 cut(s)	49, 173, 241, 378, 698, 750, 773
MseI	TTAA	2 cut(s)	261, 606
MslI	CAYNNNNRTG	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	5 cut(s)	9, 365, 399, 417, 422
MspR9I	CCNGG	4 cut(s)	94, 366, 422, 486
MvaI	CCWGG	2 cut(s)	94, 486
MvnI	CGCG	2 cut(s)	27, 191
MwoI	GCNNNNNNNGC	1 cut(s)	14
NciI	CCSGG	2 cut(s)	366, 422
NdeII	GATC	3 cut(s)	22, 36, 649
NlaIII	CATG	2 cut(s)	176, 668
NlaIV	GGNNCC	2 cut(s)	483, 736
PciSI	GCTCTTC	1 cut(s)	116
PfeI	GAWTC	4 cut(s)	65, 103, 413, 563
PkrI	GCNGC	3 cut(s)	16, 29, 32
Psp1406I	AACGTT	1 cut(s)	688
Psp6I	CCWGG	2 cut(s)	92, 484
PspGI	CCWGG	2 cut(s)	92, 484
PspN4I	GGNNCC	2 cut(s)	483, 736
PspPI	GGNCC	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	3 cut(s)	301, 317, 448
RsaNI	GTAC	3 cut(s)	300, 316, 447
RseI	CAYNNNNRTG	1 cut(s)	408
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	261, 606
SatI	GCNGC	3 cut(s)	15, 28, 31
Sau3AI	GATC	3 cut(s)	22, 36, 649
Sau96I	GGNCC	1 cut(s)	419
ScrFI	CCNGG	4 cut(s)	94, 366, 422, 486
SduI	GDGCHC	4 cut(s)	619, 638, 792, 810
SfaNI	GCATC	2 cut(s)	84, 529
SmiMI	CAYNNNNRTG	1 cut(s)	408
Sse9I	AATT	5 cut(s)	133, 342, 497, 607, 725
SsiI	CCGC	3 cut(s)	27, 30, 33
SspMI	CTAG	3 cut(s)	746, 773, 803
StyD4I	CCNGG	4 cut(s)	92, 364, 420, 484
StyI	CCWWGG	2 cut(s)	442, 745
TaaI	ACNGT	1 cut(s)	734
TaiI	ACGT	2 cut(s)	132, 691
TaqI	TCGA	3 cut(s)	49, 101, 556
TasI	AATT	5 cut(s)	133, 342, 497, 607, 725
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	2 cut(s)	30, 33
TfiI	GAWTC	4 cut(s)	65, 103, 413, 563
Tru1I	TTAA	2 cut(s)	261, 606
Tru9I	TTAA	2 cut(s)	261, 606
TscAI	CASTG	1 cut(s)	575
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	480
TspRI	CASTG	1 cut(s)	575
VneI	GTGCAC	1 cut(s)	788
XagI	CCTNNNNNAGG	1 cut(s)	744
XapI	RAATTY	1 cut(s)	342
XmaJI	CCTAGG	1 cut(s)	745
XspI	CTAG	3 cut(s)	746, 773, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.