Rorug05G0579500

Eukaryotic protein of unknown function (DUF829)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
77560903 .. 77564515
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0579500.1

Sequence Viewer

Length: 1773 bp
ATGAACGATAAGTCACAGTTGATGAATCAGCCCCCGCCGCCGATGATGAGTCTGAGCCAAGCTCAAGCCATGAGCCAGCCGCCGCCGATGATGGCTCAGCCGCCGCCGCCGCCGCAGATGATGGCTCCGTCTTCTCAAGCCATGGCTGCTGCTGTTCAGCAGCAACAGATGATGATGAACAGTCAATCTCAGCCGTTGATGATGAACCGGAGCTACAAGGCTTGGCCGCCGCAGCAGCAGCAGCAGCAGCAACAGTTCGTCGCCGCCCAGAAGCCGCCGCAGTCGAATCTGGGAAGGAATAATTGGAAGGGTAAGAAGGGAAATGACAAGCGGAGAATGGAGAAAAACGTTCCCAATTTGCCCCTGAGCGGTGGCCAGAGCAGTAGCGGAGGAGGGTATAATGTTCCCAATTTGCCCCTGAGTGGTGGCCAGAGCAGCGGAGGAGGAGGAGGAGGAGGAGGGTATATACCTCCGACGCTAAACGAGTTACAGTCACAGAATCGAATGAAAGCTCGGAAATTTTACCCCAAAAAGAAGTTTAACAATAGGTTTGCGCCTTACGCCCCAAGGAACACGACGTCGTTTATCATTAGAGCTAAGAAGTCCGGTGGGATTGCCTCGCTGGTTTCGCCTTGTCCGGTGACCCCTGCCGTGCTCCCCACGCCCATTTTCTCGCCGTCGAGGGAGGTTTTGGGGGACACGGCGAAGGAGGAGTGGGGTGTGGATGGGTATGGGTCGATGAAAGGGTTGATTCGGCTTCGGTCTCCCGGGAATGATGATGATGAGGAGGGAGGGGGTGGGTCGAGTGAGAGTGATGTGGAGGAGCATGTGGAGGTGGAGAGGAGGTTGGACCATGATTTGAGCCGGTTCGAGATGATATACCCGAATTACAGTGGGGTTGAGTATAATAATGTGCTGGAGAATAGAGTGGATGATCAGGATACACACATTGCTCAGTTGGAGGAAGAGAATTTGACTTTGAAGGAGAGGCTGTTCTTGATGGAGAGGGAGTTGGGGGACTTGAGGAGGAGGATGTTGTTTCTTGAGAGGAGGCACCATGTGATGGAGGAGGTTAATGAGGAGGTTGTGGAGAACGGGTCGGAGAACGATAGTGATGGAGGGTCGGATGTGCCCCATATGGGCATAGGGGGAGAGAGCAACATTGAGGTGGTAGATTATGTGTCCAGAAACGGTGGGGTTAGGGATGTTTCGCTGGAAGAATATGTGCATGGTGAAATGAATTTAAAGGAAAATGAGGTCAAAGATGAAGTGAGAAATGAGGTTGTAGGTAATGAAGAGATTGAACGTAAGAACGAGGGAAGAAGGAATGACCTTGTAGGTGATGGGGTCGTTTCAGAGAAGGTTGAGGAAGTGAGGAATGAGTTTATAATGAACAAAGTAATTGCAAATAAAACTGAGCTGGTGAGTAGTGAAGTTGAGACAAAGAATGAGAATGAGTTTATGCAGGGTCAGGTGAACATAGAGAAGGCTGAAGACATGGTAATTGCCTGCAATGAGAAGAATGAAACTAAAGTTATGAGAAATGAAGTTGAGACCAAGCTTGAAAATGAGTTGATGCGCGGTCAGATGAATGCAGAGAAGGATGAAGAAATGGGAACTTCATGTACAGAGAATATTAAGACCGAGGGTCAGGTGAAGAATGAAGTTGAGACGAAGAATGAGAGTGAGTTGATGCAGTGTCAGACGAATGCACAGAGGGATGAAGAAATGGGAATTGCCAGCACAGAGAAGAGCATTGGCGTCGGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

590

Amino Acids

65.8

Weight (kDa)

4.88

Isoelectric Point (pI)

63.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1388
AatII GACGTC 1 cut(s) 581
AccB1I GGYRCC 1 cut(s) 1053
AccB7I CCANNNNNTGG 1 cut(s) 1063
AccBSI CCGCTC 1 cut(s) 369
AccII CGCG 1 cut(s) 1581
AclI AACGTT 1 cut(s) 348
AcoI YGGCCR 3 cut(s) 224, 373, 427
AcsI RAATTY 3 cut(s) 518, 970, 1240
AcuI CTGAAG 1 cut(s) 1512
AcyI GRCGYC 2 cut(s) 578, 1761
AdeI CACNNNGTG 1 cut(s) 1060
AfaI GTAC 1 cut(s) 1627
AfiI CCNNNNNNNGG 4 cut(s) 368, 422, 1063, 1139
AgsI TTSAA 3 cut(s) 982, 1304, 1565
AhdI GACNNNNNGTC 1 cut(s) 1647
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AloI GAACNNNNNNTCC 2 cut(s) 977, 1009
AluBI AGCT 6 cut(s) 62, 213, 512, 596, 1420, 1561
AluI AGCT 6 cut(s) 62, 213, 512, 596, 1420, 1561
Alw21I GWGCWC 1 cut(s) 657
Alw26I GTCTC 4 cut(s) 768, 1433, 1547, 1664
Ama87I CYCGRG 1 cut(s) 767
AoxI GGCC 3 cut(s) 224, 373, 427
ApoI RAATTY 3 cut(s) 518, 970, 1240
AspLEI GCGC 2 cut(s) 556, 1581
AspS9I GGNCC 1 cut(s) 850
AsuC2I CCSGG 2 cut(s) 768, 769
AsuHPI GGTGA 6 cut(s) 652, 1244, 1352, 1435, 1486, 1666
AvaI CYCGRG 1 cut(s) 767
AvaII GGWCC 1 cut(s) 850
BaeGI GKGCMC 1 cut(s) 1134
BalI TGGCCA 2 cut(s) 375, 429
BanI GGYRCC 1 cut(s) 1053
BbsI GAAGAC 2 cut(s) 123, 1500
Bbv12I GWGCWC 1 cut(s) 657
BccI CCATC 7 cut(s) 85, 115, 719, 994, 1057, 1109, 1337
BceAI ACGGC 4 cut(s) 178, 635, 661, 717
BcgI CGANNNNNNTGC 1 cut(s) 1744
BciVI GTATCC 1 cut(s) 934
BclI TGATCA 1 cut(s) 934
BcnI CCSGG 2 cut(s) 768, 769
BcoDI GTCTC 4 cut(s) 768, 1433, 1547, 1664
BfuI GTATCC 1 cut(s) 934
BlpI GCTNAGC 1 cut(s) 96
Bme1390I CCNGG 2 cut(s) 768, 769
Bme18I GGWCC 1 cut(s) 850
BmeRI GACNNNNNGTC 1 cut(s) 1647
BmeT110I CYCGRG 1 cut(s) 767
BmgT120I GGNCC 1 cut(s) 850
BmiI GGNNCC 2 cut(s) 126, 1055
BmrFI CCNGG 2 cut(s) 768, 769
BmsI GCATC 2 cut(s) 1566, 1683
BpiI GAAGAC 2 cut(s) 123, 1500
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 1 cut(s) 938
Bpu10I CCTNAGC 1 cut(s) 365
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 4 cut(s) 48, 120, 1042, 1064
BpuMI CCSGG 2 cut(s) 768, 769
BsaHI GRCGYC 2 cut(s) 578, 1761
BsaI GGTCTC 2 cut(s) 768, 1547
BsaJI CCNNGG 4 cut(s) 141, 566, 767, 1644
BsaWI WCCGGW 3 cut(s) 207, 605, 637
BsaXI ACNNNNNCTCC 8 cut(s) 830, 860, 977, 995, 1007, 1025, 1082, 1112
Bsc4I CCNNNNNNNGG 4 cut(s) 368, 422, 1063, 1139
Bse118I RCCGGY 1 cut(s) 864
Bse3DI GCAATG 2 cut(s) 948, 1519
BseDI CCNNGG 4 cut(s) 141, 566, 767, 1644
BseGI GGATG 7 cut(s) 730, 937, 1038, 1132, 1210, 1609, 1726
BseLI CCNNNNNNNGG 4 cut(s) 368, 422, 1063, 1139
BseMI GCAATG 2 cut(s) 948, 1519
BseMII CTCAG 7 cut(s) 44, 110, 203, 356, 410, 968, 1407
BseSI GKGCMC 1 cut(s) 1134
Bsh1236I CGCG 1 cut(s) 1581
BshFI GGCC 3 cut(s) 226, 375, 429
BshNI GGYRCC 1 cut(s) 1053
BsiHKAI GWGCWC 1 cut(s) 657
BsiHKCI CYCGRG 1 cut(s) 767
BsiSI CCGG 5 cut(s) 208, 606, 638, 768, 865
BslFI GGGAC 2 cut(s) 710, 1031
BslI CCNNNNNNNGG 4 cut(s) 368, 422, 1063, 1139
BsmAI GTCTC 4 cut(s) 768, 1433, 1547, 1664
BsmBI CGTCTC 1 cut(s) 1664
BsmFI GGGAC 2 cut(s) 710, 1031
BsmI GAATGC 2 cut(s) 1597, 1714
BsnI GGCC 3 cut(s) 226, 375, 429
Bso31I GGTCTC 2 cut(s) 768, 1547
BsoBI CYCGRG 1 cut(s) 767
Bsp1286I GDGCHC 2 cut(s) 657, 1134
Bsp1407I TGTACA 1 cut(s) 1625
Bsp143I GATC 1 cut(s) 934
Bsp1720I GCTNAGC 1 cut(s) 96
Bsp19I CCATGG 1 cut(s) 141
BspANI GGCC 3 cut(s) 226, 375, 429
BspCNI CTCAG 7 cut(s) 45, 109, 202, 357, 411, 967, 1408
BspFNI CGCG 1 cut(s) 1581
BspLI GGNNCC 2 cut(s) 126, 1055
BspQI GCTCTTC 1 cut(s) 1745
BspT107I GGYRCC 1 cut(s) 1053
BspTNI GGTCTC 2 cut(s) 768, 1547
BsrBI CCGCTC 1 cut(s) 369
BsrDI GCAATG 2 cut(s) 948, 1519
BsrFI RCCGGY 1 cut(s) 864
BsrGI TGTACA 1 cut(s) 1625
BssAI RCCGGY 1 cut(s) 864
BssECI CCNNGG 4 cut(s) 141, 566, 767, 1644
BssMI GATC 1 cut(s) 934
BssNI GRCGYC 2 cut(s) 578, 1761
BssT1I CCWWGG 2 cut(s) 141, 566
Bst4CI ACNGT 6 cut(s) 18, 182, 255, 492, 893, 1193
Bst6I CTCTTC 3 cut(s) 960, 1290, 1745
BstACI GRCGYC 2 cut(s) 578, 1761
BstAUI TGTACA 1 cut(s) 1625
BstC8I GCNNGC 3 cut(s) 77, 1510, 1741
BstDEI CTNAG 8 cut(s) 53, 96, 189, 365, 419, 597, 954, 1416
BstDSI CCRYGG 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 640
BstF5I GGATG 7 cut(s) 730, 937, 1038, 1132, 1210, 1609, 1726
BstFNI CGCG 1 cut(s) 1581
BstHHI GCGC 2 cut(s) 556, 1581
BstKTI GATC 1 cut(s) 937
BstMAI GTCTC 4 cut(s) 768, 1433, 1547, 1664
BstMBI GATC 1 cut(s) 934
BstNSI RCATGY 1 cut(s) 830
BstPI GGTNACC 1 cut(s) 640
BstSCI CCNGG 2 cut(s) 766, 767
BstSLI GKGCMC 1 cut(s) 1134
BstUI CGCG 1 cut(s) 1581
BstV2I GAAGAC 2 cut(s) 123, 1500
BsuI GTATCC 1 cut(s) 934
BsuRI GGCC 3 cut(s) 226, 375, 429
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 7 cut(s) 730, 937, 1038, 1132, 1210, 1609, 1726
BtsI GCAGTG 1 cut(s) 1703
BtsIMutI CAGTG 2 cut(s) 898, 1703
Cac8I GCNNGC 3 cut(s) 77, 1510, 1741
CfoI GCGC 2 cut(s) 556, 1581
Cfr10I RCCGGY 1 cut(s) 864
Cfr13I GGNCC 1 cut(s) 850
Cfr9I CCCGGG 1 cut(s) 767
CseI GACGC 2 cut(s) 484, 1750
Csp6I GTAC 1 cut(s) 1626
CviAII CATG 8 cut(s) 70, 142, 827, 854, 1058, 1229, 1498, 1623
CviQI GTAC 1 cut(s) 1626
DdeI CTNAG 8 cut(s) 53, 96, 189, 365, 419, 597, 954, 1416
DpnI GATC 1 cut(s) 936
DpnII GATC 1 cut(s) 934
DraI TTTAAA 1 cut(s) 1245
DraIII CACNNNGTG 1 cut(s) 1060
DriI GACNNNNNGTC 1 cut(s) 1647
EaeI YGGCCR 3 cut(s) 224, 373, 427
Eam1104I CTCTTC 3 cut(s) 960, 1290, 1745
Eam1105I GACNNNNNGTC 1 cut(s) 1647
EarI CTCTTC 3 cut(s) 960, 1290, 1745
Eco130I CCWWGG 2 cut(s) 141, 566
Eco31I GGTCTC 2 cut(s) 768, 1547
Eco47I GGWCC 1 cut(s) 850
Eco57I CTGAAG 1 cut(s) 1512
Eco88I CYCGRG 1 cut(s) 767
Eco91I GGTNACC 1 cut(s) 640
EcoO65I GGTNACC 1 cut(s) 640
EcoT14I CCWWGG 2 cut(s) 141, 566
ErhI CCWWGG 2 cut(s) 141, 566
Esp3I CGTCTC 1 cut(s) 1664
FaeI CATG 8 cut(s) 73, 145, 830, 857, 1061, 1232, 1501, 1626
FaqI GGGAC 2 cut(s) 710, 1031
FatI CATG 8 cut(s) 69, 141, 826, 853, 1057, 1228, 1497, 1622
FauI CCCGC 1 cut(s) 42
FauNDI CATATG 1 cut(s) 1137
FbaI TGATCA 1 cut(s) 934
FokI GGATG 7 cut(s) 737, 944, 1045, 1139, 1217, 1616, 1733
GlaI GCGC 2 cut(s) 555, 1580
GsuI CTGGAG 1 cut(s) 938
HaeIII GGCC 3 cut(s) 226, 375, 429
HapII CCGG 5 cut(s) 208, 606, 638, 768, 865
HgaI GACGC 2 cut(s) 484, 1750
HhaI GCGC 2 cut(s) 556, 1581
Hin1I GRCGYC 2 cut(s) 578, 1761
Hin1II CATG 8 cut(s) 73, 145, 830, 857, 1061, 1232, 1501, 1626
Hin6I GCGC 2 cut(s) 554, 1579
HinP1I GCGC 2 cut(s) 554, 1579
HindIII AAGCTT 1 cut(s) 1559
HinfI GANTC 5 cut(s) 25, 49, 286, 499, 751
HpaII CCGG 5 cut(s) 208, 606, 638, 768, 865
HphI GGTGA 6 cut(s) 652, 1244, 1352, 1435, 1486, 1666
Hpy166II GTNNAC 1 cut(s) 1477
Hpy188I TCNGA 8 cut(s) 54, 474, 516, 1102, 1126, 1357, 1587, 1704
Hpy188III TCNNGA 5 cut(s) 871, 938, 997, 1043, 1185
Hpy8I GTNNAC 1 cut(s) 1477
Hpy99I CGWCG 6 cut(s) 263, 478, 580, 583, 682, 1766
HpyAV CCTTC 9 cut(s) 288, 301, 310, 700, 976, 1317, 1354, 1480, 1594
HpyCH4III ACNGT 6 cut(s) 18, 182, 255, 492, 893, 1193
HpyCH4IV ACGT 3 cut(s) 348, 578, 1306
HpyCH4V TGCA 7 cut(s) 1228, 1406, 1465, 1512, 1595, 1696, 1712
HpyF3I CTNAG 8 cut(s) 53, 96, 189, 365, 419, 597, 954, 1416
HpySE526I ACGT 3 cut(s) 348, 578, 1306
Hsp92I GRCGYC 2 cut(s) 578, 1761
Hsp92II CATG 8 cut(s) 73, 145, 830, 857, 1061, 1232, 1501, 1626
HspAI GCGC 2 cut(s) 554, 1579
Ksp22I TGATCA 1 cut(s) 934
Kzo9I GATC 1 cut(s) 934
LguI GCTCTTC 1 cut(s) 1745
LmnI GCTCC 4 cut(s) 130, 210, 660, 823
LweI GCATC 2 cut(s) 1566, 1683
MaeII ACGT 3 cut(s) 348, 578, 1306
MaeIII GTNAC 5 cut(s) 12, 486, 492, 640, 1766
MalI GATC 1 cut(s) 936
MbiI CCGCTC 1 cut(s) 369
MboI GATC 1 cut(s) 934
MhlI GDGCHC 2 cut(s) 657, 1134
MlsI TGGCCA 2 cut(s) 375, 429
MluNI TGGCCA 2 cut(s) 375, 429
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 5 cut(s) 497, 828, 939, 1080, 1104
Mox20I TGGCCA 2 cut(s) 375, 429
MscI TGGCCA 2 cut(s) 375, 429
MseI TTAA 4 cut(s) 540, 1074, 1244, 1638
MslI CAYNNNNRTG 1 cut(s) 1166
Msp20I TGGCCA 2 cut(s) 375, 429
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 5 cut(s) 208, 606, 638, 768, 865
MspR9I CCNGG 2 cut(s) 768, 769
Mva1269I GAATGC 2 cut(s) 1597, 1714
MvnI CGCG 1 cut(s) 1581
NciI CCSGG 2 cut(s) 768, 769
NcoI CCATGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 1137
NdeII GATC 1 cut(s) 934
NlaIII CATG 8 cut(s) 73, 145, 830, 857, 1061, 1232, 1501, 1626
NlaIV GGNNCC 2 cut(s) 126, 1055
NmuCI GTSAC 4 cut(s) 12, 492, 640, 1766
NspI RCATGY 1 cut(s) 830
PciSI GCTCTTC 1 cut(s) 1745
PctI GAATGC 2 cut(s) 1597, 1714
PfeI GAWTC 4 cut(s) 25, 286, 499, 751
PflMI CCANNNNNTGG 1 cut(s) 1063
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PsiI TTATAA 1 cut(s) 1388
Psp1406I AACGTT 1 cut(s) 348
PspEI GGTNACC 1 cut(s) 640
PspN4I GGNNCC 2 cut(s) 126, 1055
PspPI GGNCC 1 cut(s) 850
PsrI GAACNNNNNNTAC 4 cut(s) 197, 229, 1609, 1641
RsaI GTAC 1 cut(s) 1627
RsaNI GTAC 1 cut(s) 1626
RseI CAYNNNNRTG 1 cut(s) 1166
SapI GCTCTTC 1 cut(s) 1745
SaqAI TTAA 4 cut(s) 540, 1074, 1244, 1638
Sau3AI GATC 1 cut(s) 934
Sau96I GGNCC 1 cut(s) 850
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 768, 769
SduI GDGCHC 2 cut(s) 657, 1134
SfaNI GCATC 2 cut(s) 1566, 1683
SinI GGWCC 1 cut(s) 850
SmaI CCCGGG 1 cut(s) 769
SmiMI CAYNNNNRTG 1 cut(s) 1166
SmlI CTYRAG 4 cut(s) 63, 135, 1021, 1043
SmoI CTYRAG 4 cut(s) 63, 135, 1021, 1043
SspI AATATT 1 cut(s) 1636
StyD4I CCNGG 2 cut(s) 766, 767
StyI CCWWGG 2 cut(s) 141, 566
TaaI ACNGT 6 cut(s) 18, 182, 255, 492, 893, 1193
TaiI ACGT 3 cut(s) 351, 581, 1309
TaqI TCGA 6 cut(s) 284, 502, 680, 737, 803, 870
TaqII GACCGA 2 cut(s) 750, 1658
TatI WGTACW 1 cut(s) 1625
TfiI GAWTC 4 cut(s) 25, 286, 499, 751
Tru1I TTAA 4 cut(s) 540, 1074, 1244, 1638
Tru9I TTAA 4 cut(s) 540, 1074, 1244, 1638
TscAI CASTG 2 cut(s) 898, 1703
TseFI GTSAC 4 cut(s) 12, 492, 640, 1766
Tsp45I GTSAC 4 cut(s) 12, 492, 640, 1766
TspGWI ACGGA 1 cut(s) 117
TspMI CCCGGG 1 cut(s) 767
TspRI CASTG 2 cut(s) 898, 1703
Van91I CCANNNNNTGG 1 cut(s) 1063
VpaK11BI GGWCC 1 cut(s) 850
XapI RAATTY 3 cut(s) 518, 970, 1240
XceI RCATGY 1 cut(s) 830
XmaI CCCGGG 1 cut(s) 767
ZraI GACGTC 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.