RLG00000027108

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003107
Physical Location & Seq
Reverse (-)
8475120 .. 8478420
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027108

Sequence Viewer

Length: 351 bp
ATGCTTCATCAATATCAGCTCAGCGATTCTCGCAGTTTCAAGCTCCTTCGTTCCACGAGTTCCTTCTCCGACGAGCGCTCTCCGCCTTCTTCCTCTTACTGCTCCAGAAATGAACACAAGGACGTTGTTCTCGTCAGAGCGCTGCTTATGGATCTGGAGGCCGACAGTTGTGAAATCGTCTACATTGCGGCGGTTCCCTTCGCTTATGGATCTAGATCTGAATTCGCTTCTTTTGGAATCAATCTCCCCAAGAAAACCAAACCCCTCGAAGCTTTTATTTCCTCCCTCCTTTTCACCTCGAAGTCTTTAAGAGGCGGATACACCTTTTTACCTGAAAACAAAAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.09

Weight (kDa)

9.2

Isoelectric Point (pI)

65.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 180
AciI CCGC 4 cut(s) 83, 188, 191, 315
AclWI GGATC 2 cut(s) 159, 217
AcsI RAATTY 1 cut(s) 221
AfeI AGCGCT 2 cut(s) 77, 141
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 3 cut(s) 19, 43, 272
AluI AGCT 3 cut(s) 19, 43, 272
AlwI GGATC 2 cut(s) 159, 217
Aor51HI AGCGCT 2 cut(s) 77, 141
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 221
AspLEI GCGC 2 cut(s) 78, 142
AsuHPI GGTGA 1 cut(s) 286
BauI CACGAG 1 cut(s) 55
BbvI GCAGC 1 cut(s) 129
BciVI GTATCC 1 cut(s) 311
BfaI CTAG 1 cut(s) 213
BfoI RGCGCY 2 cut(s) 79, 143
BfuI GTATCC 1 cut(s) 311
BglII AGATCT 1 cut(s) 215
BisI GCNGC 2 cut(s) 143, 189
BlpI GCTNAGC 1 cut(s) 20
BlsI GCNGC 2 cut(s) 144, 190
BmiI GGNNCC 1 cut(s) 195
BpmI CTGGAG 2 cut(s) 88, 176
Bpu1102I GCTNAGC 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 183
Bse8I GATNNNNATC 1 cut(s) 214
BseJI GATNNNNATC 1 cut(s) 214
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 161
BsnI GGCC 1 cut(s) 161
Bsp143I GATC 3 cut(s) 151, 209, 215
Bsp1720I GCTNAGC 1 cut(s) 20
BspACI CCGC 4 cut(s) 83, 188, 191, 315
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 2 cut(s) 159, 217
BsrDI GCAATG 1 cut(s) 183
BssMI GATC 3 cut(s) 151, 209, 215
BssSI CACGAG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 20
BstH2I RGCGCY 2 cut(s) 79, 143
BstHHI GCGC 2 cut(s) 78, 142
BstKTI GATC 3 cut(s) 154, 212, 218
BstMBI GATC 3 cut(s) 151, 209, 215
BstMWI GCNNNNNNNGC 2 cut(s) 30, 82
BstV1I GCAGC 1 cut(s) 129
BstX2I RGATCY 3 cut(s) 151, 209, 215
BstYI RGATCY 3 cut(s) 151, 209, 215
BsuI GTATCC 1 cut(s) 311
BsuRI GGCC 1 cut(s) 161
CfoI GCGC 2 cut(s) 78, 142
CviJI RGCY 4 cut(s) 19, 43, 161, 272
CviKI_1 RGCY 4 cut(s) 19, 43, 161, 272
DdeI CTNAG 1 cut(s) 20
DpnI GATC 3 cut(s) 153, 211, 217
DpnII GATC 3 cut(s) 151, 209, 215
EciI GGCGGA 2 cut(s) 72, 330
Eco47III AGCGCT 2 cut(s) 77, 141
EcoRI GAATTC 1 cut(s) 221
FaiI YATR 2 cut(s) 149, 207
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 2 cut(s) 143, 189
Fsp4HI GCNGC 2 cut(s) 143, 189
FspBI CTAG 1 cut(s) 213
GlaI GCGC 2 cut(s) 77, 141
GluI GCNGC 2 cut(s) 143, 189
GsuI CTGGAG 2 cut(s) 88, 176
HaeII RGCGCY 2 cut(s) 79, 143
HaeIII GGCC 1 cut(s) 161
HhaI GCGC 2 cut(s) 78, 142
Hin6I GCGC 2 cut(s) 76, 140
HinP1I GCGC 2 cut(s) 76, 140
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 2 cut(s) 26, 237
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 70, 137, 220
Hpy188III TCNNGA 3 cut(s) 105, 155, 213
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 4 cut(s) 56, 73, 96, 208
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 82
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 123
HspAI GCGC 2 cut(s) 76, 140
Kzo9I GATC 3 cut(s) 151, 209, 215
LmnI GCTCC 2 cut(s) 48, 107
LpnPI CCDG 3 cut(s) 118, 140, 345
Lsp1109I GCAGC 1 cut(s) 129
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 123
MalI GATC 3 cut(s) 153, 211, 217
MboI GATC 3 cut(s) 151, 209, 215
MboII GAAGA 1 cut(s) 81
MflI RGATCY 3 cut(s) 151, 209, 215
MluCI AATT 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 7 cut(s) 103, 151, 275, 292, 296, 305, 307
MseI TTAA 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 30, 82
NdeII GATC 3 cut(s) 151, 209, 215
NlaIV GGNNCC 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 2 cut(s) 26, 237
PkrI GCNGC 2 cut(s) 144, 190
PspN4I GGNNCC 1 cut(s) 195
PsuI RGATCY 3 cut(s) 151, 209, 215
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 2 cut(s) 143, 189
Sau3AI GATC 3 cut(s) 151, 209, 215
SetI ASST 7 cut(s) 21, 45, 126, 274, 299, 326, 334
Sse9I AATT 1 cut(s) 221
SsiI CCGC 4 cut(s) 83, 188, 191, 315
SspMI CTAG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 267, 299
TasI AATT 1 cut(s) 221
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 2 cut(s) 26, 237
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 126
XapI RAATTY 1 cut(s) 221
XbaI TCTAGA 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.