AT3G19150

Cyclin-dependent kinase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003107
Physical Location & Seq
Reverse (-)
6616330 .. 6617951
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19150.3

Sequence Viewer

Length: 591 bp
ATGAGCGAGAGAAAGCGAGAGCTTGCAGAAGAAGCTTCAAGCACAAGCTTCTCACCACTGAAGAAAACGAAGCTTAATGATTCTTCTGATTCATCACCGGACTCTCATGACGTCATCGTCTTCGCGGTTTCATCTTCTTCCGTTGCTTCGTCGGCGGCTTTAGCGTCTGATGAATGTTCCGTTACCATCGGTGGAGAAGAAAGTGATCAGTCCTCGAGTATCAGCTCCGGTTGTTTCACCAGTGAATCGAAAGAAATCGCGAAGAACAGTTCGTCGTTTGGTGTAGATCTGGAGGATCATCAAATCGAAACCGAAACCGAAACCTCAACATTCATCACCAGCAATTTCAGAAAAGAGACGAGTCCAGTGAGTGAGGGTTTGGGAGAAACGACAACAGAAATGGAATCATCATCGGCAACGAAGAGAAAACAACCGGGGGTGAGGAAGACTCCAACGGCGGCGGAGATTGAGGATTTGTTCTCGGAGCTAGAGAGTCAAGACGATAAGAAGAAGCAATTCATAGAAAAGTACAACTTCGATATTGTCAATGACGAACCGCTTGAAGGTCGCTACAAGTGGGATCGACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDI

Protein Analysis

196

Amino Acids

21.45

Weight (kDa)

4.52

Isoelectric Point (pI)

70.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AatII GACGTC 1 cut(s) 114
AccII CGCG 2 cut(s) 125, 260
AciI CCGC 5 cut(s) 125, 155, 458, 461, 557
AclWI GGATC 2 cut(s) 303, 588
AcuI CTGAAG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 1 cut(s) 563
AgsI TTSAA 2 cut(s) 39, 563
AluBI AGCT 6 cut(s) 22, 35, 48, 73, 225, 487
AluI AGCT 6 cut(s) 22, 35, 48, 73, 225, 487
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 2 cut(s) 303, 588
Ama87I CYCGRG 1 cut(s) 214
Asp700I GAANNNNTTC 1 cut(s) 515
AsuC2I CCSGG 1 cut(s) 435
AsuHPI GGTGA 5 cut(s) 45, 87, 229, 328, 451
AvaI CYCGRG 1 cut(s) 214
BbsI GAAGAC 2 cut(s) 112, 452
BccI CCATC 1 cut(s) 194
BceAI ACGGC 1 cut(s) 471
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 488
BglII AGATCT 1 cut(s) 286
BisI GCNGC 2 cut(s) 156, 459
BlsI GCNGC 2 cut(s) 157, 460
Bme1390I CCNGG 1 cut(s) 435
BmeT110I CYCGRG 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 435
BpiI GAAGAC 2 cut(s) 112, 452
BplI GAGNNNNNCTC 2 cut(s) 433, 465
BpmI CTGGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 435
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 434
BsaWI WCCGGW 2 cut(s) 97, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse1I ACTGG 2 cut(s) 240, 365
BseDI CCNNGG 1 cut(s) 434
BseLI CCNNNNNNNGG 1 cut(s) 563
BseNI ACTGG 2 cut(s) 240, 365
Bsh1236I CGCG 2 cut(s) 125, 260
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 3 cut(s) 98, 228, 434
BslI CCNNNNNNNGG 1 cut(s) 563
BsmAI GTCTC 1 cut(s) 350
BsmBI CGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 214
Bsp143I GATC 4 cut(s) 205, 286, 295, 580
Bsp68I TCGCGA 1 cut(s) 260
BspACI CCGC 5 cut(s) 125, 155, 458, 461, 557
BspFNI CGCG 2 cut(s) 125, 260
BspHI TCATGA 1 cut(s) 106
BspPI GGATC 2 cut(s) 303, 588
BsrI ACTGG 2 cut(s) 240, 365
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 4 cut(s) 205, 286, 295, 580
BssNI GRCGYC 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 24
BstFNI CGCG 2 cut(s) 125, 260
BstKTI GATC 4 cut(s) 208, 289, 298, 583
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 4 cut(s) 205, 286, 295, 580
BstMWI GCNNNNNNNGC 3 cut(s) 32, 152, 161
BstSCI CCNGG 1 cut(s) 433
BstUI CGCG 2 cut(s) 125, 260
BstV2I GAAGAC 2 cut(s) 112, 452
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BtsIMutI CAGTG 3 cut(s) 56, 247, 372
BtuMI TCGCGA 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 24
CciI TCATGA 1 cut(s) 106
CseI GACGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 529
CviAII CATG 1 cut(s) 107
CviJI RGCY 7 cut(s) 22, 35, 48, 73, 158, 225, 487
CviKI_1 RGCY 7 cut(s) 22, 35, 48, 73, 158, 225, 487
CviQI GTAC 1 cut(s) 529
DpnI GATC 4 cut(s) 207, 288, 297, 582
DpnII GATC 4 cut(s) 205, 286, 295, 580
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
EciI GGCGGA 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 214
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 1 cut(s) 110
FaiI YATR 2 cut(s) 108, 521
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FatI CATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 156, 459
Fsp4HI GCNGC 2 cut(s) 156, 459
FspBI CTAG 1 cut(s) 488
GluI GCNGC 2 cut(s) 156, 459
GsuI CTGGAG 1 cut(s) 311
HapII CCGG 3 cut(s) 98, 228, 434
HgaI GACGC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 1 cut(s) 110
HindIII AAGCTT 3 cut(s) 33, 46, 71
HinfI GANTC 8 cut(s) 80, 89, 101, 245, 361, 404, 448, 493
HpaII CCGG 3 cut(s) 98, 228, 434
HphI GGTGA 5 cut(s) 45, 87, 229, 328, 451
Hpy188I TCNGA 4 cut(s) 88, 169, 350, 484
Hpy188III TCNNGA 4 cut(s) 107, 259, 290, 497
Hpy99I CGWCG 2 cut(s) 154, 277
HpyAV CCTTC 1 cut(s) 557
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 152, 161
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 4 cut(s) 205, 286, 295, 580
LmnI GCTCC 2 cut(s) 230, 484
LpnPI CCDG 7 cut(s) 111, 241, 253, 275, 352, 378, 447
MaeI CTAG 1 cut(s) 488
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 181
MalI GATC 4 cut(s) 207, 288, 297, 582
MboI GATC 4 cut(s) 205, 286, 295, 580
MflI RGATCY 1 cut(s) 286
MluCI AATT 2 cut(s) 343, 515
MlyI GAGTC 4 cut(s) 95, 370, 442, 502
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 6 cut(s) 223, 286, 334, 367, 435, 463
MroXI GAANNNNTTC 1 cut(s) 515
MseI TTAA 2 cut(s) 75, 589
MspI CCGG 3 cut(s) 98, 228, 434
MspR9I CCNGG 1 cut(s) 435
MvnI CGCG 2 cut(s) 125, 260
MwoI GCNNNNNNNGC 3 cut(s) 32, 152, 161
NciI CCSGG 1 cut(s) 435
NdeII GATC 4 cut(s) 205, 286, 295, 580
NlaIII CATG 1 cut(s) 110
NruI TCGCGA 1 cut(s) 260
PaeR7I CTCGAG 1 cut(s) 214
PagI TCATGA 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 515
PfeI GAWTC 4 cut(s) 80, 89, 245, 404
PkrI GCNGC 2 cut(s) 157, 460
PleI GAGTC 4 cut(s) 95, 369, 442, 501
PpsI GAGTC 4 cut(s) 95, 369, 442, 501
PspXI VCTCGAGB 1 cut(s) 214
PsuI RGATCY 1 cut(s) 286
RruI TCGCGA 1 cut(s) 260
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SaqAI TTAA 2 cut(s) 75, 589
SatI GCNGC 2 cut(s) 156, 459
Sau3AI GATC 4 cut(s) 205, 286, 295, 580
SchI GAGTC 4 cut(s) 95, 370, 442, 502
ScrFI CCNGG 1 cut(s) 435
SetI ASST 9 cut(s) 24, 37, 50, 75, 114, 227, 326, 489, 568
Sfr274I CTCGAG 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 2 cut(s) 343, 515
SsiI CCGC 5 cut(s) 125, 155, 458, 461, 557
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 1 cut(s) 433
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 114
TaqI TCGA 5 cut(s) 215, 248, 306, 537, 583
TasI AATT 2 cut(s) 343, 515
TatI WGTACW 1 cut(s) 528
TauI GCSGC 2 cut(s) 158, 461
TfiI GAWTC 4 cut(s) 80, 89, 245, 404
Tru1I TTAA 2 cut(s) 75, 589
Tru9I TTAA 2 cut(s) 75, 589
TscAI CASTG 3 cut(s) 63, 247, 372
TspDTI ATGAA 5 cut(s) 81, 120, 186, 322, 508
TspGWI ACGGA 2 cut(s) 130, 169
TspRI CASTG 3 cut(s) 63, 247, 372
XhoI CTCGAG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 515
XspI CTAG 1 cut(s) 488
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.