Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003107

Physical Location & Seq

Genomic Coordinates Reverse (-)

8845968 .. 8846532

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCAGTCGTCGACTCCTCCACTGCCGACAACCACTCTCCATCTAAGAGAAGAAAAATCCTCACCGCTTCGGCTTCGCCTCTAGAGACAATGCTTTATAATCATCAGCTCGGCGGTTCTCGCAGTTTCAAGCCCCTTCGTTCCACGAGTTCCTACTCTAACGAACACTCTCTGCCTTCTTCCTCTTACTGCTCCAGTAATGAGCTTAACGACGTCATTCTCATTAGCTCACCGCTTCTGGATCTGGAGACCAAATGTTGTGAAACCGTCTACACTGCACTGGTTCCATTCGCTTCTGGATCTGGATCTGAATTCGCTTCAAATTCAGGTTTCATTCACTTCAAATTCCTTACTCTAGAAACAACGCTGTTGATTGAGCTGTGCTTGGAGAACTCCGACGAGATGGAGCCGCCGGTAGAGAGCAAAGCGCCTCCAAGTGATGAGATTGAAGAGTTCTTTGCCACAGCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

158

Amino Acids

17.11

Weight (kDa)

4.63

Isoelectric Point (pI)

64.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49620 AT1G49620 AT1G49620 AT3G19150 AT3G19150 AT3G19150
fragaria_vesca	FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360
malus_domestica	MD05G1077300.v1.1 MD10G1092500.v1.1
prunus_persica	Prupe.8G122300_v2.0.a1 Prupe.8G122300_v2.0.a1
pyrus_communis	pycom05g07110 pycom10g07590
rosa_chinensis	RchiOBHm_Chr6g0258231
rosa_laevigata	RLG00000000982 RLG00000001994 RLG00000014637 RLG00000024163 RLG00000027108 RLG00000035728
rosa_multiflora	Rmu_sc0004230.1_g000011
rosa_roxburghii	Rroxscaffold_178G00437200 Rroxscaffold_7G00205360
rosa_rugosa	Rorug05G0347300 Rorug05G0579500
rosa_samantha	Rh1BG242200 Rh6AG097500 Rh6BG088500
rosa_wichuraiana	Rw6G008260 Rw6G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	99
AatII	GACGTC	1 cut(s)	216
AccI	GTMKAC	2 cut(s)	12, 270
AciI	CCGC	4 cut(s)	66, 114, 233, 410
AclWI	GGATC	3 cut(s)	249, 307, 313
AcsI	RAATTY	3 cut(s)	311, 322, 344
AcyI	GRCGYC	1 cut(s)	213
AgsI	TTSAA	4 cut(s)	130, 321, 343, 449
AluBI	AGCT	5 cut(s)	109, 205, 228, 379, 467
AluI	AGCT	5 cut(s)	109, 205, 228, 379, 467
Alw26I	GTCTC	2 cut(s)	80, 242
AlwI	GGATC	3 cut(s)	249, 307, 313
ApoI	RAATTY	3 cut(s)	311, 322, 344
AspLEI	GCGC	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	55, 222
BauI	CACGAG	1 cut(s)	145
BccI	CCATC	2 cut(s)	49, 397
BcoDI	GTCTC	2 cut(s)	80, 242
BfaI	CTAG	2 cut(s)	83, 356
BfoI	RGCGCY	1 cut(s)	431
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
BmiI	GGNNCC	2 cut(s)	285, 408
BpmI	CTGGAG	2 cut(s)	178, 266
BsaBI	GATNNNNATC	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	2 cut(s)	195, 285
Bse8I	GATNNNNATC	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	2 cut(s)	195, 285
BseRI	GAGGAG	1 cut(s)	7
BsgI	GTGCAG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	413
BsmAI	GTCTC	2 cut(s)	80, 242
Bso31I	GGTCTC	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	241, 299, 305
BspACI	CCGC	4 cut(s)	66, 114, 233, 410
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	285, 408
BspPI	GGATC	3 cut(s)	249, 307, 313
BspTNI	GGTCTC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	195, 285
BssAI	RCCGGY	1 cut(s)	412
BssMI	GATC	3 cut(s)	241, 299, 305
BssNI	GRCGYC	1 cut(s)	213
BssSI	CACGAG	1 cut(s)	145
Bst2BI	CACGAG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	444
BstACI	GRCGYC	1 cut(s)	213
BstDEI	CTNAG	2 cut(s)	45, 468
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	3 cut(s)	244, 302, 308
BstMAI	GTCTC	2 cut(s)	80, 242
BstMBI	GATC	3 cut(s)	241, 299, 305
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstX2I	RGATCY	3 cut(s)	241, 299, 305
BstYI	RGATCY	3 cut(s)	241, 299, 305
BtsI	GCAGTG	2 cut(s)	21, 273
BtsIMutI	CAGTG	3 cut(s)	21, 273, 278
CfoI	GCGC	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	412
CviJI	RGCY	8 cut(s)	74, 109, 133, 205, 228, 379, 409, 467
CviKI_1	RGCY	8 cut(s)	74, 109, 133, 205, 228, 379, 409, 467
DdeI	CTNAG	2 cut(s)	45, 468
DpnI	GATC	3 cut(s)	243, 301, 307
DpnII	GATC	3 cut(s)	241, 299, 305
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	311
FaiI	YATR	1 cut(s)	99
FblI	GTMKAC	2 cut(s)	12, 270
Fnu4HI	GCNGC	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	410
FspBI	CTAG	2 cut(s)	83, 356
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	410
GsuI	CTGGAG	2 cut(s)	178, 266
HaeII	RGCGCY	1 cut(s)	431
HapII	CCGG	1 cut(s)	413
HhaI	GCGC	1 cut(s)	430
Hin1I	GRCGYC	1 cut(s)	213
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	2 cut(s)	55, 222
Hpy166II	GTNNAC	2 cut(s)	13, 271
Hpy188I	TCNGA	2 cut(s)	310, 397
Hpy188III	TCNNGA	6 cut(s)	83, 239, 245, 297, 303, 356
Hpy8I	GTNNAC	2 cut(s)	13, 271
Hpy99I	CGWCG	3 cut(s)	14, 215, 401
HpyAV	CCTTC	2 cut(s)	146, 186
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	2 cut(s)	45, 468
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	213
HspAI	GCGC	1 cut(s)	428
Kzo9I	GATC	3 cut(s)	241, 299, 305
LmnI	GCTCC	2 cut(s)	197, 406
LpnPI	CCDG	8 cut(s)	208, 224, 230, 266, 282, 288, 312, 426
MaeI	CTAG	2 cut(s)	83, 356
MaeII	ACGT	1 cut(s)	213
MalI	GATC	3 cut(s)	243, 301, 307
MboI	GATC	3 cut(s)	241, 299, 305
MboII	GAAGA	3 cut(s)	63, 171, 461
MflI	RGATCY	3 cut(s)	241, 299, 305
MluCI	AATT	3 cut(s)	311, 322, 344
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	5 cut(s)	28, 71, 90, 193, 441
MseI	TTAA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	120
NdeII	GATC	3 cut(s)	241, 299, 305
NlaIV	GGNNCC	2 cut(s)	285, 408
NmeAIII	GCCGAG	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	411
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	285, 408
PsuI	RGATCY	3 cut(s)	241, 299, 305
PvuII	CAGCTG	1 cut(s)	467
SalI	GTCGAC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	3 cut(s)	241, 299, 305
SchI	GAGTC	1 cut(s)	8
SetI	ASST	7 cut(s)	111, 207, 216, 230, 331, 381, 469
Sse9I	AATT	3 cut(s)	311, 322, 344
SsiI	CCGC	4 cut(s)	66, 114, 233, 410
SspMI	CTAG	2 cut(s)	83, 356
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	12
TasI	AATT	3 cut(s)	311, 322, 344
TauI	GCSGC	1 cut(s)	412
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	3 cut(s)	28, 280, 285
TspDTI	ATGAA	1 cut(s)	322
TspRI	CASTG	3 cut(s)	28, 280, 285
XapI	RAATTY	3 cut(s)	311, 322, 344
XbaI	TCTAGA	2 cut(s)	82, 355
XmiI	GTMKAC	2 cut(s)	12, 270
XspI	CTAG	2 cut(s)	83, 356
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.