Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003107

Physical Location & Seq

Genomic Coordinates Reverse (-)

24055095 .. 24055526

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001994

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCAGACTGTAAGCAAATGGGGATCGTTGACTCCTGCGCTGCCGTCGACCAGTCTCCGTCCAAGAGAAGGAAAATCCTCACCACTTCACCTCCAGAGACAATGCTTCATCATCATCAACTTGGCGATTCTCGCAGTTTCGAGCTCCTTCGTTCAACGAGTTCCTTCTCCGACAATCACTCTCCGCCTTCTTACTCTTGTTGCTCCAGAAATGAACTCAGCGACGCCGTTCTCGTCAGAGCGCTGCTTCTGGATATGGAGGCCGACAATTGTGAAATCTTCTACACTACGTCGATTCCATTCGTTTATGGATCTGGATCTGAATTAGCTTCTTTTGGTTCGTCAAAATTAGCAGAGAAACGACGCCGTCAAGCAAGCTGTGCCTGGAGAAATCTGACGGATGGCGCCTCTAGCAGTGAGCAAAGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

144

Amino Acids

15.66

Weight (kDa)

6.06

Isoelectric Point (pI)

81.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49620 AT1G49620 AT1G49620 AT3G19150 AT3G19150 AT3G19150
fragaria_vesca	FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360
malus_domestica	MD05G1077300.v1.1 MD10G1092500.v1.1
prunus_persica	Prupe.8G122300_v2.0.a1 Prupe.8G122300_v2.0.a1
pyrus_communis	pycom05g07110 pycom10g07590
rosa_chinensis	RchiOBHm_Chr6g0258231
rosa_laevigata	RLG00000000982 RLG00000001994 RLG00000014637 RLG00000024163 RLG00000027108 RLG00000035728
rosa_multiflora	Rmu_sc0004230.1_g000011
rosa_roxburghii	Rroxscaffold_178G00437200 Rroxscaffold_7G00205360
rosa_rugosa	Rorug05G0347300 Rorug05G0579500
rosa_samantha	Rh1BG242200 Rh6AG097500 Rh6BG088500
rosa_wichuraiana	Rw6G008260 Rw6G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	3 cut(s)	32, 319, 325
AcyI	GRCGYC	3 cut(s)	225, 364, 405
AfeI	AGCGCT	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	156
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	3 cut(s)	145, 329, 378
AluI	AGCT	3 cut(s)	145, 329, 378
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	60, 92
AlwI	GGATC	3 cut(s)	32, 319, 325
Aor51HI	AGCGCT	1 cut(s)	243
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	41, 244
AspLEI	GCGC	3 cut(s)	41, 244, 407
AsuHPI	GGTGA	2 cut(s)	73, 81
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	28, 231
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	3 cut(s)	29, 212, 351
BciT130I	CCWGG	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	60, 92
BfaI	CTAG	2 cut(s)	411, 430
BfoI	RGCGCY	2 cut(s)	245, 408
BisI	GCNGC	2 cut(s)	42, 245
BlsI	GCNGC	2 cut(s)	43, 246
Bme1390I	CCNGG	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	385
BpmI	CTGGAG	3 cut(s)	78, 190, 406
BsaBI	GATNNNNATC	1 cut(s)	316
BsaHI	GRCGYC	3 cut(s)	225, 364, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	385
BseGI	GGATG	1 cut(s)	406
BseJI	GATNNNNATC	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	28, 231
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	2 cut(s)	60, 92
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	3 cut(s)	24, 311, 317
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	406
BspPI	GGATC	3 cut(s)	32, 319, 325
BspT107I	GGYRCC	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	24, 311, 317
BssNI	GRCGYC	3 cut(s)	225, 364, 405
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	11
BstACI	GRCGYC	3 cut(s)	225, 364, 405
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	406
BstH2I	RGCGCY	2 cut(s)	245, 408
BstHHI	GCGC	3 cut(s)	41, 244, 407
BstKTI	GATC	3 cut(s)	27, 314, 320
BstMAI	GTCTC	2 cut(s)	60, 92
BstMBI	GATC	3 cut(s)	24, 311, 317
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 380, 411
BstNI	CCWGG	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	383
BstV1I	GCAGC	2 cut(s)	28, 231
BstX2I	RGATCY	2 cut(s)	311, 317
BstYI	RGATCY	2 cut(s)	311, 317
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	3 cut(s)	41, 244, 407
CseI	GACGC	2 cut(s)	233, 372
CviJI	RGCY	4 cut(s)	145, 263, 329, 378
CviKI_1	RGCY	4 cut(s)	145, 263, 329, 378
DdeI	CTNAG	1 cut(s)	218
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	3 cut(s)	26, 313, 319
DpnII	GATC	3 cut(s)	24, 311, 317
EciI	GGCGGA	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	147
Eco47III	AGCGCT	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	147
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
FaiI	YATR	2 cut(s)	257, 309
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	42, 245
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	42, 245
FspBI	CTAG	2 cut(s)	411, 430
GlaI	GCGC	3 cut(s)	40, 243, 406
GluI	GCNGC	2 cut(s)	42, 245
GsuI	CTGGAG	3 cut(s)	78, 190, 406
HaeII	RGCGCY	2 cut(s)	245, 408
HaeIII	GGCC	1 cut(s)	263
HgaI	GACGC	2 cut(s)	233, 372
HhaI	GCGC	3 cut(s)	41, 244, 407
Hin1I	GRCGYC	3 cut(s)	225, 364, 405
Hin6I	GCGC	3 cut(s)	39, 242, 405
HinP1I	GCGC	3 cut(s)	39, 242, 405
HincII	GTYRAC	2 cut(s)	31, 49
HindII	GTYRAC	2 cut(s)	31, 49
HinfI	GANTC	3 cut(s)	32, 128, 295
HphI	GGTGA	2 cut(s)	73, 81
Hpy166II	GTNNAC	2 cut(s)	31, 49
Hpy188I	TCNGA	4 cut(s)	172, 239, 322, 396
Hpy188III	TCNNGA	4 cut(s)	95, 207, 251, 315
Hpy8I	GTNNAC	2 cut(s)	31, 49
Hpy99I	CGWCG	4 cut(s)	50, 227, 295, 366
HpyAV	CCTTC	4 cut(s)	63, 158, 175, 198
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 380, 411
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	290
Hsp92I	GRCGYC	3 cut(s)	225, 364, 405
HspAI	GCGC	3 cut(s)	39, 242, 405
KasI	GGCGCC	1 cut(s)	404
Kzo9I	GATC	3 cut(s)	24, 311, 317
LmnI	GCTCC	2 cut(s)	150, 209
LpnPI	CCDG	8 cut(s)	49, 65, 108, 220, 236, 300, 370, 397
Lsp1109I	GCAGC	2 cut(s)	28, 231
MaeI	CTAG	2 cut(s)	411, 430
MaeII	ACGT	1 cut(s)	290
MalI	GATC	3 cut(s)	26, 313, 319
MboI	GATC	3 cut(s)	24, 311, 317
MboII	GAAGA	1 cut(s)	271
MfeI	CAATTG	1 cut(s)	268
MflI	RGATCY	2 cut(s)	311, 317
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	3 cut(s)	268, 323, 347
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	4 cut(s)	89, 102, 253, 418
MspR9I	CCNGG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	3 cut(s)	132, 380, 411
NarI	GGCGCC	1 cut(s)	405
NdeII	GATC	3 cut(s)	24, 311, 317
NlaIV	GGNNCC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	128, 295
PflFI	GACNNNGTC	1 cut(s)	366
PkrI	GCNGC	2 cut(s)	43, 246
PleI	GAGTC	1 cut(s)	26
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	311, 317
PsyI	GACNNNGTC	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	147
SalI	GTCGAC	1 cut(s)	47
SatI	GCNGC	2 cut(s)	42, 245
Sau3AI	GATC	3 cut(s)	24, 311, 317
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	5 cut(s)	94, 147, 293, 331, 380
SfoI	GGCGCC	1 cut(s)	406
Sse9I	AATT	3 cut(s)	268, 323, 347
SsiI	CCGC	1 cut(s)	185
SspDI	GGCGCC	1 cut(s)	404
SspMI	CTAG	2 cut(s)	411, 430
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	383
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	3 cut(s)	48, 141, 293
TasI	AATT	3 cut(s)	268, 323, 347
TfiI	GAWTC	2 cut(s)	128, 295
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	2 cut(s)	41, 244
TspDTI	ATGAA	2 cut(s)	98, 228
TspGWI	ACGGA	2 cut(s)	48, 413
TspRI	CASTG	1 cut(s)	421
Tth111I	GACNNNGTC	1 cut(s)	366
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	2 cut(s)	411, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.