Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003107

Physical Location & Seq

Genomic Coordinates Forward (+)

10090032 .. 10092955

Gene Structure 2924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAATTTATCATTTATACAACTGTATATTTACACCAATGAAGAGAAACAAGAGAGAGAGAGAGATATGGAGGACTACAACTGTAAGCGAATGGCGGCCATGGACGACTCCACCAACGCAGCCATATCCAAGAGAAGAAAAGTTACTGCTTCAACGCCGCCATTGCCTCCAACTCAAACAATGCTTCAGCTCCTCAATTCCCCGGACTCCTGCTCCACCTTTTGCTCCGATCACTCTCCGCCTCCTTCCTCTTGCTGCTCCAGCAACGAACTCAGCGATGTCCCTGCTGCCGTCCGCAGCTCTCCGCTCCTAGATCTGGAGTCCAAGAGTTTCAAAACGGTATTCTCCAACTCGACCTCCTTCGTCAACAATAAATTCAGGGAAACGACGCCGTCGAGCGAGCTGTGCCTGGACTCGGACGAAATGTCATCGCCGGTGTCTCACCGACGGAGAATCCCGGAGAGAAAATCCCCTCCGTTTGAAGAGATCGAAGAGTTCTTCGCTGTGGCCGAGAAGTACGAGCATAAGAGGTTTGCAGAGAAGTACAACTATGATATCGTCAAGGACGTGCCTCTGGATGGTCGGTACCAGTGGGTTCGTTTGAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

204

Amino Acids

23.31

Weight (kDa)

5.53

Isoelectric Point (pI)

75.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49620 AT1G49620 AT1G49620 AT3G19150 AT3G19150 AT3G19150
fragaria_vesca	FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360
malus_domestica	MD05G1077300.v1.1 MD10G1092500.v1.1
prunus_persica	Prupe.8G122300_v2.0.a1 Prupe.8G122300_v2.0.a1
pyrus_communis	pycom05g07110 pycom10g07590
rosa_chinensis	RchiOBHm_Chr6g0258231
rosa_laevigata	RLG00000000982 RLG00000001994 RLG00000014637 RLG00000024163 RLG00000027108 RLG00000035728
rosa_multiflora	Rmu_sc0004230.1_g000011
rosa_roxburghii	Rroxscaffold_178G00437200 Rroxscaffold_7G00205360
rosa_rugosa	Rorug05G0347300 Rorug05G0579500
rosa_samantha	Rh1BG242200 Rh6AG097500 Rh6BG088500
rosa_wichuraiana	Rw6G008260 Rw6G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	585
AccB1I	GGYRCC	1 cut(s)	585
AccBSI	CCGCTC	1 cut(s)	307
AciI	CCGC	5 cut(s)	95, 158, 239, 295, 305
AcoI	YGGCCR	2 cut(s)	96, 507
AcsI	RAATTY	2 cut(s)	4, 374
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	389
AfaI	GTAC	3 cut(s)	518, 545, 587
AfiI	CCNNNNNNNGG	3 cut(s)	316, 415, 578
AgsI	TTSAA	4 cut(s)	153, 334, 482, 604
AhdI	GACNNNNNGTC	1 cut(s)	424
AjiI	CACGTC	1 cut(s)	568
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	3 cut(s)	190, 300, 403
AluI	AGCT	3 cut(s)	190, 300, 403
Alw26I	GTCTC	1 cut(s)	444
AoxI	GGCC	2 cut(s)	96, 507
ApeKI	GCWGC	4 cut(s)	119, 255, 287, 297
ApoI	RAATTY	2 cut(s)	4, 374
Asp718I	GGTACC	1 cut(s)	585
AsuC2I	CCSGG	2 cut(s)	203, 458
AsuHPI	GGTGA	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	585
BarI	GAAGNNNNNNTAC	2 cut(s)	127, 159
BbvI	GCAGC	4 cut(s)	131, 242, 274, 309
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	2 cut(s)	275, 376
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	1 cut(s)	410
BcnI	CCSGG	2 cut(s)	203, 458
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	1 cut(s)	311
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	6 cut(s)	96, 120, 158, 256, 288, 298
BlsI	GCNGC	6 cut(s)	97, 121, 159, 257, 289, 299
Bme1390I	CCNGG	3 cut(s)	203, 410, 458
BmeRI	GACNNNNNGTC	1 cut(s)	424
BmgBI	CACGTC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	587
BmrFI	CCNGG	3 cut(s)	203, 410, 458
BpmI	CTGGAG	2 cut(s)	244, 338
BpuMI	CCSGG	2 cut(s)	203, 458
BsaHI	GRCGYC	1 cut(s)	389
BsaJI	CCNNGG	2 cut(s)	99, 201
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 341, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 415, 578
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	589
Bse3DI	GCAATG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	99, 201
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	3 cut(s)	316, 415, 578
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	4 cut(s)	131, 242, 274, 309
BshFI	GGCC	2 cut(s)	98, 509
BshNI	GGYRCC	1 cut(s)	585
BsiSI	CCGG	3 cut(s)	203, 434, 458
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	3 cut(s)	316, 415, 578
BsmAI	GTCTC	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	98, 509
Bsp143I	GATC	3 cut(s)	229, 313, 486
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	5 cut(s)	95, 158, 239, 295, 305
BspANI	GGCC	2 cut(s)	98, 509
BspCNI	CTCAG	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	587
BspT107I	GGYRCC	1 cut(s)	585
BsrBI	CCGCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	589
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	99, 201
BssMI	GATC	3 cut(s)	229, 313, 486
BssNI	GRCGYC	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	24, 83, 340
Bst6I	CTCTTC	3 cut(s)	36, 477, 486
BstACI	GRCGYC	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	272
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	583
BstKTI	GATC	3 cut(s)	232, 316, 489
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	3 cut(s)	229, 313, 486
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 261, 405
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	3 cut(s)	201, 408, 456
BstV1I	GCAGC	4 cut(s)	131, 242, 274, 309
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	98, 509
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	2 cut(s)	291, 414
BtrI	CACGTC	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	583
BtsIMutI	CAGTG	1 cut(s)	596
Cac8I	GCNNGC	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	433
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	3 cut(s)	517, 544, 586
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	7 cut(s)	98, 122, 190, 300, 403, 509, 607
CviKI_1	RGCY	7 cut(s)	98, 122, 190, 300, 403, 509, 607
CviQI	GTAC	3 cut(s)	517, 544, 586
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	3 cut(s)	231, 315, 488
DpnII	GATC	3 cut(s)	229, 313, 486
DriI	GACNNNNNGTC	1 cut(s)	424
EaeI	YGGCCR	2 cut(s)	96, 507
Eam1104I	CTCTTC	3 cut(s)	36, 477, 486
Eam1105I	GACNNNNNGTC	1 cut(s)	424
EarI	CTCTTC	3 cut(s)	36, 477, 486
EciI	GGCGGA	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	408
EcoRV	GATATC	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	103
FaiI	YATR	8 cut(s)	17, 27, 68, 101, 125, 525, 552, 610
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	6 cut(s)	96, 120, 158, 256, 288, 298
FokI	GGATG	1 cut(s)	590
Fsp4HI	GCNGC	6 cut(s)	96, 120, 158, 256, 288, 298
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	6 cut(s)	96, 120, 158, 256, 288, 298
GsuI	CTGGAG	2 cut(s)	244, 338
HaeIII	GGCC	2 cut(s)	98, 509
HapII	CCGG	3 cut(s)	203, 434, 458
HgaI	GACGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	5 cut(s)	107, 206, 320, 413, 453
HpaII	CCGG	3 cut(s)	203, 434, 458
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	229, 418
Hpy188III	TCNNGA	2 cut(s)	317, 575
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	3 cut(s)	391, 397, 450
HpyAV	CCTTC	2 cut(s)	255, 370
HpyCH4III	ACNGT	3 cut(s)	24, 83, 340
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 261, 405
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	1 cut(s)	567
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	1 cut(s)	103
KpnI	GGTACC	1 cut(s)	589
Kzo9I	GATC	3 cut(s)	229, 313, 486
LmnI	GCTCC	5 cut(s)	195, 218, 230, 263, 312
Lsp1109I	GCAGC	4 cut(s)	131, 242, 274, 309
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	231, 315, 488
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	3 cut(s)	229, 313, 486
MboII	GAAGA	5 cut(s)	53, 147, 490, 494, 503
MflI	RGATCY	1 cut(s)	313
MluCI	AATT	3 cut(s)	4, 196, 374
MlyI	GAGTC	4 cut(s)	101, 200, 329, 407
MmeI	TCCRAC	2 cut(s)	194, 372
MnlI	CCTC	9 cut(s)	64, 177, 203, 252, 259, 367, 483, 522, 582
MspI	CCGG	3 cut(s)	203, 434, 458
MspR9I	CCNGG	3 cut(s)	203, 410, 458
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	3 cut(s)	163, 261, 405
NciI	CCSGG	2 cut(s)	203, 458
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	229, 313, 486
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	587
NmeAIII	GCCGAG	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	4 cut(s)	273, 392, 507, 564
PfeI	GAWTC	1 cut(s)	453
PflFI	GACNNNGTC	1 cut(s)	391
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	6 cut(s)	97, 121, 159, 257, 289, 299
PleI	GAGTC	4 cut(s)	101, 200, 328, 407
PpsI	GAGTC	4 cut(s)	101, 200, 328, 407
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	313
PsyI	GACNNNGTC	1 cut(s)	391
RsaI	GTAC	3 cut(s)	518, 545, 587
RsaNI	GTAC	3 cut(s)	517, 544, 586
SatI	GCNGC	6 cut(s)	96, 120, 158, 256, 288, 298
Sau3AI	GATC	3 cut(s)	229, 313, 486
SchI	GAGTC	4 cut(s)	101, 200, 329, 407
ScrFI	CCNGG	3 cut(s)	203, 410, 458
SetI	ASST	7 cut(s)	192, 221, 302, 359, 405, 533, 570
SgrAI	CRCCGGYG	1 cut(s)	433
Sse9I	AATT	3 cut(s)	4, 196, 374
SsiI	CCGC	5 cut(s)	95, 158, 239, 295, 305
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	3 cut(s)	201, 408, 456
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	24, 83, 340
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	3 cut(s)	353, 395, 489
TasI	AATT	3 cut(s)	4, 196, 374
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	2 cut(s)	98, 160
TfiI	GAWTC	1 cut(s)	453
TscAI	CASTG	1 cut(s)	596
TseI	GCWGC	4 cut(s)	119, 255, 287, 297
TspDTI	ATGAA	2 cut(s)	17, 54
TspGWI	ACGGA	2 cut(s)	463, 465
TspRI	CASTG	1 cut(s)	596
Tth111I	GACNNNGTC	1 cut(s)	391
XapI	RAATTY	2 cut(s)	4, 374
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.