Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003107

Physical Location & Seq

Genomic Coordinates Forward (+)

14108410 .. 14109078

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1092500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTTTAACAAATTCGAATTTAAATTTCAAAATTCATTGCACCGTTTGCAGGCCAAGAGTTCCGAAACGCCATTCTCCAACTCGACCTCCGTCACCAACAATAAATTCATGTTTCACTTCTCATTCCTTCATCATAATTTCCCTCTTCAATTTCTCCAAACCGAAACGTATTTTTTTCAGGTTAATTTTTGTTTCATCAGCAGGGAGACGACGCCGTCGAGCAAGCTGTGCCTGGACTCGAACGAAATATCATCGCCGGCACCGGTGGTGTCTCACTGGCGGAGAATCCCGGTCAGCAAATCGCCTCCGAGTGAAGAGATCGAAGAGTTCTTTGCCGCCGTCGAGAAGTACGAGCATAAGCGCTTTACAGAGAAGTACAACTATGATATCGCCAATGACGTGCCTCTGGAGGGTCGGTACCAGTGGGTTCGTTTGAAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

148

Amino Acids

17.5

Weight (kDa)

7.82

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	102 - 145	1.2e-17	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49620 AT1G49620 AT1G49620 AT3G19150 AT3G19150 AT3G19150
fragaria_vesca	FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360
malus_domestica	MD05G1077300.v1.1 MD10G1092500.v1.1
prunus_persica	Prupe.8G122300_v2.0.a1 Prupe.8G122300_v2.0.a1
pyrus_communis	pycom05g07110 pycom10g07590
rosa_chinensis	RchiOBHm_Chr6g0258231
rosa_laevigata	RLG00000000982 RLG00000001994 RLG00000014637 RLG00000024163 RLG00000027108 RLG00000035728
rosa_multiflora	Rmu_sc0004230.1_g000011
rosa_roxburghii	Rroxscaffold_178G00437200 Rroxscaffold_7G00205360
rosa_rugosa	Rorug05G0347300 Rorug05G0579500
rosa_samantha	Rh1BG242200 Rh6AG097500 Rh6BG088500
rosa_wichuraiana	Rw6G008260 Rw6G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	214
Acc65I	GGTACC	1 cut(s)	417
AccB1I	GGYRCC	2 cut(s)	259, 417
AciI	CCGC	2 cut(s)	280, 336
AcsI	RAATTY	5 cut(s)	11, 17, 23, 31, 104
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	3 cut(s)	350, 377, 419
AfeI	AGCGCT	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	49, 410
AgeI	ACCGGT	1 cut(s)	262
AgsI	TTSAA	3 cut(s)	29, 149, 436
AjiI	CACGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	2 cut(s)	200, 276
Aor51HI	AGCGCT	1 cut(s)	362
AoxI	GGCC	1 cut(s)	51
ApoI	RAATTY	5 cut(s)	11, 17, 23, 31, 104
AsiGI	ACCGGT	1 cut(s)	262
Asp718I	GGTACC	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	363
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	15
BanI	GGYRCC	2 cut(s)	259, 417
BceAI	ACGGC	2 cut(s)	199, 323
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	2 cut(s)	200, 276
BfoI	RGCGCY	1 cut(s)	364
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	2 cut(s)	233, 290
BmgBI	CACGTC	1 cut(s)	400
BmiI	GGNNCC	2 cut(s)	261, 419
BmrFI	CCNGG	2 cut(s)	233, 290
BoxI	GACNNNNGTC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	428
Bpu14I	TTCGAA	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	290
BsaHI	GRCGYC	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	262
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 410
Bse118I	RCCGGY	2 cut(s)	256, 262
Bse1I	ACTGG	2 cut(s)	281, 421
Bse3DI	GCAATG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	49, 410
BseMI	GCAATG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	281, 421
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	2 cut(s)	259, 417
BshTI	ACCGGT	1 cut(s)	262
BsiSI	CCGG	3 cut(s)	257, 263, 290
BslI	CCNNNNNNNGG	2 cut(s)	49, 410
BsmAI	GTCTC	2 cut(s)	200, 276
BsmBI	CGTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	53
Bsp119I	TTCGAA	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	2 cut(s)	280, 336
BspANI	GGCC	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	261, 419
BspT104I	TTCGAA	1 cut(s)	15
BspT107I	GGYRCC	2 cut(s)	259, 417
BsrDI	GCAATG	1 cut(s)	35
BsrFI	RCCGGY	2 cut(s)	256, 262
BsrI	ACTGG	2 cut(s)	281, 421
BssAI	RCCGGY	2 cut(s)	256, 262
BssMI	GATC	1 cut(s)	318
BssNI	GRCGYC	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	3 cut(s)	150, 309, 318
BstACI	GRCGYC	1 cut(s)	212
BstAPI	GCANNNNNTGC	2 cut(s)	46, 228
BstBI	TTCGAA	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	51, 224, 258
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	2 cut(s)	200, 276
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 228
BstNI	CCWGG	1 cut(s)	233
BstPAI	GACNNNNGTC	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	231, 288
BsuRI	GGCC	1 cut(s)	53
BtgZI	GCGATG	1 cut(s)	237
BtrI	CACGTC	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	274, 428
Cac8I	GCNNGC	3 cut(s)	51, 224, 258
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	2 cut(s)	256, 262
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	3 cut(s)	349, 376, 418
CspAI	ACCGGT	1 cut(s)	262
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	2 cut(s)	53, 226
CviKI_1	RGCY	2 cut(s)	53, 226
CviQI	GTAC	3 cut(s)	349, 376, 418
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DraI	TTTAAA	1 cut(s)	22
DrdI	GACNNNNNNGTC	1 cut(s)	214
DseDI	GACNNNNNNGTC	1 cut(s)	214
Eam1104I	CTCTTC	3 cut(s)	150, 309, 318
EarI	CTCTTC	3 cut(s)	150, 309, 318
EciI	GGCGGA	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	388
Eco47III	AGCGCT	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	231
EcoRV	GATATC	1 cut(s)	388
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	1 cut(s)	112
FaiI	YATR	5 cut(s)	110, 135, 357, 384, 442
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	336
Fsp4HI	GCNGC	1 cut(s)	336
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	428
HaeII	RGCGCY	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	3 cut(s)	257, 263, 290
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	363
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	236, 285
HpaII	CCGG	3 cut(s)	257, 263, 290
HphI	GGTGA	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	64, 309
Hpy188III	TCNNGA	2 cut(s)	343, 407
Hpy99I	CGWCG	3 cut(s)	214, 220, 344
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	2 cut(s)	167, 399
HpyCH4V	TGCA	2 cut(s)	40, 49
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 228
HpySE526I	ACGT	2 cut(s)	167, 399
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	1 cut(s)	361
KpnI	GGTACC	1 cut(s)	421
KroI	GCCGGC	1 cut(s)	256
KroNI	GCCGGC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	318
MaeII	ACGT	2 cut(s)	167, 399
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	3 cut(s)	137, 326, 335
MluCI	AATT	8 cut(s)	11, 17, 23, 31, 104, 136, 149, 184
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	97, 153, 315, 403, 414
MroNI	GCCGGC	1 cut(s)	256
MseI	TTAA	3 cut(s)	6, 21, 183
MspI	CCGG	3 cut(s)	257, 263, 290
MspR9I	CCNGG	2 cut(s)	233, 290
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	46, 228
NaeI	GCCGGC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	1 cut(s)	318
NgoMIV	GCCGGC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	2 cut(s)	261, 419
NmuCI	GTSAC	1 cut(s)	91
NspV	TTCGAA	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	3 cut(s)	215, 348, 396
PdiI	GCCGGC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	285
PflFI	GACNNNGTC	1 cut(s)	214
PinAI	ACCGGT	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PshAI	GACNNNNGTC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	261, 419
PsyI	GACNNNGTC	1 cut(s)	214
RsaI	GTAC	3 cut(s)	350, 377, 419
RsaNI	GTAC	3 cut(s)	349, 376, 418
SaqAI	TTAA	3 cut(s)	6, 21, 183
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	1 cut(s)	318
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	233, 290
SetI	ASST	5 cut(s)	89, 170, 183, 228, 402
SfuI	TTCGAA	1 cut(s)	15
SgrAI	CRCCGGYG	1 cut(s)	262
SmiI	ATTTAAAT	1 cut(s)	22
Sse9I	AATT	8 cut(s)	11, 17, 23, 31, 104, 136, 149, 184
SsiI	CCGC	2 cut(s)	280, 336
StyD4I	CCNGG	2 cut(s)	231, 288
SwaI	ATTTAAAT	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	2 cut(s)	170, 402
TaqI	TCGA	6 cut(s)	15, 83, 218, 239, 321, 342
TasI	AATT	8 cut(s)	11, 17, 23, 31, 104, 136, 149, 184
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	3 cut(s)	6, 21, 183
Tru9I	TTAA	3 cut(s)	6, 21, 183
TscAI	CASTG	2 cut(s)	281, 428
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	4 cut(s)	24, 97, 119, 184
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	281, 428
Tth111I	GACNNNGTC	1 cut(s)	214
XapI	RAATTY	5 cut(s)	11, 17, 23, 31, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.