Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003107

Physical Location & Seq

Genomic Coordinates Reverse (-)

5274692 .. 5278203

Gene Structure 3512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06360.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCCGACTGTAAGCGAATGGCGGTGGTGGACTCCTCCGGCGAGGACTCTCCGTCTAAGAGGAGGAGAATCCTCGCTACTCCAGAGACAATGCTTCGTCGTCGTCGTCATAATCAGCTCGGCGATTCTCGTGGTTTCAAGCTCCTTCGCCGTTCCACGAGTTCCTGCTCCGCCGACGTCGAGCACTCGCTGCATTCCTCTTGCTGCTCCTGCAATGAGCTCCACGACGTCGTTTTCATCACCTCGCCGCTTCTGGATCTGGAGGCCAAGAGTTTTGAAACCGACTACTACACCGCTCCGCCAAGCCATAAATTCAGCAGGGAAACGACGCCGTCGAGCGAGCTGTGCCTGGAGAACTCCGAAGAGATGGATTCACCGGCGGTGAGCAAATCGCCGCCAAGTGACGAGATCGAAGAGTTCTTCGCCACGGCCGAGAAGTACGAGCAAAAGCGCTTCGCAGAAAAGTACAACTTTGATATCGTGAAGGAGGCGCCGTTGGAGGGACGGTACCACTGGGTTCGTTTGAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

178

Amino Acids

20.26

Weight (kDa)

5.9

Isoelectric Point (pI)

88.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	131 - 174	2.2e-17	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49620 AT1G49620 AT1G49620 AT3G19150 AT3G19150 AT3G19150
fragaria_vesca	FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360
malus_domestica	MD05G1077300.v1.1 MD10G1092500.v1.1
prunus_persica	Prupe.8G122300_v2.0.a1 Prupe.8G122300_v2.0.a1
pyrus_communis	pycom05g07110 pycom10g07590
rosa_chinensis	RchiOBHm_Chr6g0258231
rosa_laevigata	RLG00000000982 RLG00000001994 RLG00000014637 RLG00000024163 RLG00000027108 RLG00000035728
rosa_multiflora	Rmu_sc0004230.1_g000011
rosa_roxburghii	Rroxscaffold_178G00437200 Rroxscaffold_7G00205360
rosa_rugosa	Rorug05G0347300 Rorug05G0579500
rosa_samantha	Rh1BG242200 Rh6AG097500 Rh6BG088500
rosa_wichuraiana	Rw6G008260 Rw6G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	180, 231
Acc65I	GGTACC	1 cut(s)	507
AccB1I	GGYRCC	2 cut(s)	490, 507
AccBSI	CCGCTC	1 cut(s)	296
AciI	CCGC	7 cut(s)	23, 171, 248, 294, 299, 380, 395
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	2 cut(s)	3, 429
AcsI	RAATTY	1 cut(s)	311
AcyI	GRCGYC	4 cut(s)	177, 228, 329, 491
AfaI	GTAC	3 cut(s)	440, 467, 509
AfeI	AGCGCT	1 cut(s)	452
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	3 cut(s)	139, 278, 526
AhdI	GACNNNNNGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	4 cut(s)	118, 142, 220, 343
AluI	AGCT	4 cut(s)	118, 142, 220, 343
Alw21I	GWGCWC	2 cut(s)	186, 222
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	264
Aor51HI	AGCGCT	1 cut(s)	452
AoxI	GGCC	3 cut(s)	3, 264, 429
ApeKI	GCWGC	2 cut(s)	190, 204
ApoI	RAATTY	1 cut(s)	311
Asp718I	GGTACC	1 cut(s)	507
AspLEI	GCGC	2 cut(s)	453, 493
AsuHPI	GGTGA	3 cut(s)	232, 366, 394
BanI	GGYRCC	2 cut(s)	490, 507
BanII	GRGCYC	1 cut(s)	222
BauI	CACGAG	2 cut(s)	129, 157
Bbv12I	GWGCWC	2 cut(s)	186, 222
BbvI	GCAGC	2 cut(s)	177, 191
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	4 cut(s)	135, 316, 444, 478
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	80
BfoI	RGCGCY	2 cut(s)	454, 494
BisI	GCNGC	4 cut(s)	191, 205, 248, 395
BlsI	GCNGC	4 cut(s)	192, 206, 249, 396
Bme1390I	CCNGG	1 cut(s)	350
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	492, 509
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	1 cut(s)	523
BmuI	ACTGGG	1 cut(s)	523
BpmI	CTGGAG	3 cut(s)	66, 281, 371
BsaHI	GRCGYC	4 cut(s)	177, 228, 329, 491
BsaJI	CCNNGG	1 cut(s)	426
BsaXI	ACNNNNNCTCC	4 cut(s)	479, 491, 509, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse118I	RCCGGY	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	518
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	518
BseRI	GAGGAG	3 cut(s)	25, 76, 79
BseX3I	CGGCCG	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	177, 191
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	3 cut(s)	5, 266, 431
BshNI	GGYRCC	2 cut(s)	490, 507
BsiEI	CGRYCG	1 cut(s)	432
BsiHKAI	GWGCWC	2 cut(s)	186, 222
BsiSI	CCGG	2 cut(s)	39, 377
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	516
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	5, 266, 431
Bsp1286I	GDGCHC	2 cut(s)	186, 222
Bsp143I	GATC	2 cut(s)	256, 408
BspACI	CCGC	7 cut(s)	23, 171, 248, 294, 299, 380, 395
BspANI	GGCC	3 cut(s)	5, 266, 431
BspLI	GGNNCC	2 cut(s)	492, 509
BspPI	GGATC	1 cut(s)	264
BspT107I	GGYRCC	2 cut(s)	490, 507
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	518
BssAI	RCCGGY	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	2 cut(s)	256, 408
BssNI	GRCGYC	4 cut(s)	177, 228, 329, 491
BssSI	CACGAG	2 cut(s)	129, 157
Bst2BI	CACGAG	2 cut(s)	129, 157
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	11, 507
Bst6I	CTCTTC	2 cut(s)	357, 408
BstACI	GRCGYC	4 cut(s)	177, 228, 329, 491
BstAPI	GCANNNNNTGC	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	426
BstH2I	RGCGCY	2 cut(s)	454, 494
BstHHI	GCGC	2 cut(s)	453, 493
BstKTI	GATC	2 cut(s)	259, 411
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	2 cut(s)	256, 408
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 210, 345
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	177, 191
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BstZI	CGGCCG	1 cut(s)	429
BsuRI	GGCC	3 cut(s)	5, 266, 431
BtgI	CCRYGG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	511
Cac8I	GCNNGC	1 cut(s)	341
CfoI	GCGC	2 cut(s)	453, 493
Cfr10I	RCCGGY	1 cut(s)	376
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	3 cut(s)	439, 466, 508
CviAII	CATG	1 cut(s)	531
CviJI	RGCY	9 cut(s)	5, 118, 142, 220, 266, 306, 343, 431, 529
CviKI_1	RGCY	9 cut(s)	5, 118, 142, 220, 266, 306, 343, 431, 529
CviQI	GTAC	3 cut(s)	439, 466, 508
DdeI	CTNAG	1 cut(s)	57
DinI	GGCGCC	1 cut(s)	492
DpnI	GATC	2 cut(s)	258, 410
DpnII	GATC	2 cut(s)	256, 408
DriI	GACNNNNNGTC	1 cut(s)	52
EaeI	YGGCCR	2 cut(s)	3, 429
EagI	CGGCCG	1 cut(s)	429
Eam1104I	CTCTTC	2 cut(s)	357, 408
Eam1105I	GACNNNNNGTC	1 cut(s)	52
EarI	CTCTTC	2 cut(s)	357, 408
EciI	GGCGGA	2 cut(s)	160, 288
Ecl136II	GAGCTC	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	478
Eco47III	AGCGCT	1 cut(s)	452
Eco52I	CGGCCG	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	348
EcoRV	GATATC	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	492
EheI	GGCGCC	1 cut(s)	492
FaeI	CATG	1 cut(s)	534
FaiI	YATR	3 cut(s)	111, 309, 532
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	1 cut(s)	530
Fnu4HI	GCNGC	4 cut(s)	191, 205, 248, 395
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	4 cut(s)	191, 205, 248, 395
GlaI	GCGC	2 cut(s)	452, 492
GluI	GCNGC	4 cut(s)	191, 205, 248, 395
GsuI	CTGGAG	3 cut(s)	66, 281, 371
HaeII	RGCGCY	2 cut(s)	454, 494
HaeIII	GGCC	3 cut(s)	5, 266, 431
HapII	CCGG	2 cut(s)	39, 377
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	2 cut(s)	453, 493
Hin1I	GRCGYC	4 cut(s)	177, 228, 329, 491
Hin1II	CATG	1 cut(s)	534
Hin6I	GCGC	2 cut(s)	451, 491
HinP1I	GCGC	2 cut(s)	451, 491
HinfI	GANTC	5 cut(s)	32, 47, 69, 125, 371
HpaII	CCGG	2 cut(s)	39, 377
HphI	GGTGA	3 cut(s)	232, 366, 394
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	4 cut(s)	83, 254, 260, 481
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	9 cut(s)	102, 105, 108, 179, 182, 230, 233, 331, 337
HpyAV	CCTTC	2 cut(s)	155, 478
HpyCH4III	ACNGT	2 cut(s)	11, 507
HpyCH4IV	ACGT	2 cut(s)	177, 228
HpyCH4V	TGCA	2 cut(s)	193, 213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 210, 345
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	2 cut(s)	177, 228
Hsp92I	GRCGYC	4 cut(s)	177, 228, 329, 491
Hsp92II	CATG	1 cut(s)	534
HspAI	GCGC	2 cut(s)	451, 491
KasI	GGCGCC	1 cut(s)	490
KpnI	GGTACC	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	256, 408
LmnI	GCTCC	5 cut(s)	147, 173, 212, 225, 301
Lsp1109I	GCAGC	2 cut(s)	177, 191
MaeII	ACGT	2 cut(s)	177, 228
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	2 cut(s)	258, 410
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	2 cut(s)	256, 408
MboII	GAAGA	3 cut(s)	374, 412, 425
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	186, 222
MluCI	AATT	1 cut(s)	311
Mly113I	GGCGCC	1 cut(s)	491
MlyI	GAGTC	2 cut(s)	26, 41
MmeI	TCCRAC	1 cut(s)	477
MspI	CCGG	2 cut(s)	39, 377
MspR9I	CCNGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	3 cut(s)	190, 210, 345
NarI	GGCGCC	1 cut(s)	491
NdeII	GATC	2 cut(s)	256, 408
NlaIII	CATG	1 cut(s)	534
NlaIV	GGNNCC	2 cut(s)	492, 509
NmeAIII	GCCGAG	2 cut(s)	99, 457
NmuCI	GTSAC	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	3 cut(s)	103, 332, 429
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	3 cut(s)	69, 125, 371
PflFI	GACNNNGTC	1 cut(s)	331
PkrI	GCNGC	4 cut(s)	192, 206, 249, 396
PleI	GAGTC	2 cut(s)	26, 41
PluTI	GGCGCC	1 cut(s)	494
PpsI	GAGTC	2 cut(s)	26, 41
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	492, 509
PsuI	RGATCY	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	331
RsaI	GTAC	3 cut(s)	440, 467, 509
RsaNI	GTAC	3 cut(s)	439, 466, 508
SacI	GAGCTC	1 cut(s)	222
SatI	GCNGC	4 cut(s)	191, 205, 248, 395
Sau3AI	GATC	2 cut(s)	256, 408
SchI	GAGTC	2 cut(s)	26, 41
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	186, 222
SetI	ASST	7 cut(s)	120, 144, 180, 222, 231, 245, 345
SfoI	GGCGCC	1 cut(s)	492
SgrAI	CRCCGGYG	1 cut(s)	376
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	7 cut(s)	23, 171, 248, 294, 299, 380, 395
SspDI	GGCGCC	1 cut(s)	490
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	11, 507
TaiI	ACGT	2 cut(s)	180, 231
TaqI	TCGA	3 cut(s)	180, 335, 411
TasI	AATT	1 cut(s)	311
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	2 cut(s)	250, 397
TfiI	GAWTC	3 cut(s)	69, 125, 371
TscAI	CASTG	1 cut(s)	518
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	190, 204
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	518
Tth111I	GACNNNGTC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	311
ZraI	GACGTC	2 cut(s)	178, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.